Clone Sequence Records
BS08833.3prime Sequence
900 bp (875 high quality bases) assembled on 2006-01-18
> BS08833.3prime
ATGGTCTAGAAAGCTTCTAAATCAGAGAGCTTTGCGCCCACTGAGCAACC
TCTGTGGGAAGGGCCTGGTATCGCTGCATACAGTGGTGAATCTGGCTGTA
TGTCAGCGCCAGCTTATGCATCTCAAACTCTTTCTGCACCTTACCTACGC
CCCCTCCAGCTCCACCGGTGAGCGGCATGATCAGCTCTGCGATGCGTAAA
TGCTCGAAGGCCTTCAGGACAATGGACCGCTCCACGGCCTGCATTGTGGT
GGACACTTTGGCAAACTTGGAAAAGCGCGCGTAAATGATCTCGAAGTTGA
AGGAATCGCGATCGTAAATCTGCGAATGGTGCTTGATGGCGATGATCAGG
CACAGCTCTAGGACTGAGAGCCCGCAAAGCAGCTCTATCTTGTCGTCGCC
CTCAAACTGTGATCCCACTGCAGCCATTTTTTCGGCTGTGATGTGGGGAG
ATTGCGGTCGGAGATGTGCCACCAGGCGGAATAGGAAGTTCTTGAGATAG
GCCTCGCTAATGTCGAAGTCATGGAGCGCTTGGAGGGTGCTTCTTGCCTG
CTGAGTGGCCAGGACTTTGCATATTTGCTTGTTCCAGGCATCGCGTAGTC
TGGGCGAAAAGCCGTACTCCCCGGGGTCAAAATGGTTGCGGGAGAAGTAA
AGTGCCCCCGACTGGATGTTTTGTAGGTTATAGATTTTCTCCGCCGCCAG
CAACAGTGAATTGCCGGTCGGGAGGGACAGTAGATCCCTGCACAGGTCAA
CGTAATCCTCAAAGCGCCGCAAGCTGGGAAAGAGAAAGACCTGCCGGTGC
GAGAAACGCGACTTGACCCGCTTCTCCAGCAGCTCGATCACGTCGAGGCG
ACAGGTAACGCCAAGTACACAGATGGGCGCCTGGGCTGACTGGAAGACGT
BS08833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2917-PA | 1380 | Orc4-RA | 497..1380 | 900..17 | 4395 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 619..1506 | 900..13 | 4410 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24795849..24796736 | 13..900 | 4410 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:09:01 has no hits.
BS08833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:26 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-PA | 497..1380 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:53 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2917-PA | 497..1380 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:27 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 619..1506 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:31 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 619..1506 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:31 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24795849..24796736 | 13..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:27 Download gff for
BS08833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683372..20684259 | 13..900 | 99 | | Plus |
BS08833.5prime Sequence
863 bp (860 high quality bases) assembled on 2006-01-18
> BS08833.5prime
GAAGTTATCAGTCGACATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCA
GGCGCTTCCTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGC
TACGCAAAGGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGA
AATGGGGGAATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAA
AGACAACGCTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCG
TTCGGGGAAAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGA
CGACCGAGTGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACG
CTGCGGATGGGAAAGTGTTCGGATCGTTCGCCGAGAACCTCGCCTTCCTG
CTGCAATGCCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTAT
TCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCT
ACAACCTCTTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTT
GGCGTTACCTGTCGCCTCGACGTGATCGAGCTGCTGGAGAAGCGGGTCAA
GTCGCGTTTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCT
TTGAGGATTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGC
AATTCACTGTTGCTGGCGGCGGAGAAAATCTATAACCTACAAAACATCCA
GTCGGGGGCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACG
GCTTTTCGCCCAGACTACGCGATGCCTGGAACAAGCAATATGCAAAGTCC
TGGCCACTCAGCA
BS08833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2917-PA | 1380 | Orc4-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG2917-PA | 1380 | Orc4-RA | 822..848 | 837..863 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 123..970 | 17..863 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24796385..24797041 | 863..208 | 3235 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24797101..24797292 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:42:49 has no hits.
BS08833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:27 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:55 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2917-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:27:06 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 116..969 | 10..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:39 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 116..969 | 10..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:39 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24796386..24797040 | 209..862 | 99 | <- | Minus |
| 2R | 24797101..24797299 | 10..208 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:27:06 Download gff for
BS08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683909..20684563 | 209..862 | 99 | <- | Minus |
| arm_2R | 20684624..20684822 | 10..208 | 98 | | Minus |
BS08833.complete Sequence
1412 bp (1412 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636288
> BS08833.complete
GAAGTTATCAGTCGACATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCA
GGCGCTTCCTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGC
TACGCAAAGGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGA
AATGGGGGAATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAA
AGACAACGCTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCG
TTCGGGGAAAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGA
CGACCGAGTGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACG
CTGCGGATGGGAAAGTGTTCGGATCGTTCGCCGAGAACCTCGCCTTCCTG
CTGCAATGCCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTAT
TCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCT
ACAACCTCTTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTT
GGCGTTACCTGTCGCCTCGACGTGATCGAGCTGCTGGAGAAGCGGGTCAA
GTCGCGTTTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCT
TTGAGGATTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGC
AATTCACTGTTGCTGGCGGCGGAGAAAATCTATAACCTACAAAACATCCA
GTCGGGGGCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACG
GCTTTTCGCCCAGACTACGCGATGCCTGGAACAAGCAAATATGCAAAGTC
CTGGCCACTCAGCAGGCAAGAAGCACCCTCCAAGCGCTCCATGACTTCGA
CATTAGCGAGGCCTATCTCAAGAACTTCCTATTCCGCCTGGTGGCACATC
TCCGACCGCAATCTCCCCACATCACAGCCGAAAAAATGGCTGCAGTGGGA
TCACAGTTTGAGGGCGACGACAAGATAGAGCTGCTTTGCGGGCTCTCAGT
CCTAGAGCTGTGCCTGATCATCGCCATCAAGCACCATTCGCAGATTTACG
ATCGCGATTCCTTCAACTTCGAGATCATTTACGCGCGCTTTTCCAAGTTT
GCCAAAGTGTCCACCACAATGCAGGCCGTGGAGCGGTCCATTGTCCTGAA
GGCCTTCGAGCATTTACGCATCGCAGAGCTGATCATGCCGCTCACCGGTG
GAGCTGGAGGGGGCGTAGGTAAGGTGCAGAAAGAGTTTGAGATGCATAAG
CTGGCGCTGACATACAGCCAGATTCACCACTGTATGCAGCGATACCAGGC
CCTTCCCACAGAGGTTGCTCAGTGGGCGCAAAGCTCTCTGATTTAGAAGC
TTTCTAGACCAT
BS08833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1380 | CG2917-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 123..1506 | 17..1400 | 6905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24795849..24797041 | 1400..208 | 5950 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24797101..24797292 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:04 has no hits.
BS08833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:52 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 1..1380 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:59 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 106..1496 | 10..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:18 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 123..1502 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:52 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 106..1496 | 10..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:31 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 123..1502 | 17..1396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:31 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24795853..24797040 | 209..1396 | 100 | <- | Minus |
| 2R | 24797101..24797292 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:18 Download gff for
BS08833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683376..20684563 | 209..1396 | 100 | <- | Minus |
| arm_2R | 20684624..20684815 | 17..208 | 100 | | Minus |
BS08833.pep Sequence
Translation from 16 to 1395
> BS08833.pep
MPEADRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESN
SLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVAL
KSITVQMQLENAADGKVFGSFAENLAFLLQCLKAGGKHSKSVIFILEEFD
LFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSH
RQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALY
FSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAY
LKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCL
IIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHL
RIAELIMPLTGGAGGGVGKVQKEFEMHKLALTYSQIHHCMQRYQALPTEV
AQWAQSSLI*
BS08833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-PA | 459 | CG2917-PA | 1..459 | 1..459 | 2342 | 100 | Plus |
