Clone Sequence Records
BS08834.5prime Sequence
717 bp (716 high quality bases) assembled on 2006-01-18
> BS08834.5prime
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
TAGAAGCTTTCTAGACC
BS08834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PA | 687 | CG10165-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG10165-PB | 687 | CG10165-RB | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1344 | 17..703 | 3435 | 100 | Plus |
CG10165-RC | 1308 | CG10165-RC | 155..841 | 17..703 | 3435 | 100 | Plus |
CG10165-RE | 854 | CG10165-RE | 72..758 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527377..19527706 | 703..374 | 1650 | 100 | Minus |
2L | 23513712 | 2L | 19527760..19527953 | 375..182 | 970 | 100 | Minus |
2L | 23513712 | 2L | 19528088..19528252 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:20:37 has no hits.
BS08834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:29 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:58 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:56 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 550..1246 | 7..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:02 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 62..758 | 7..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:02 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527377..19527705 | 375..703 | 100 | <- | Minus |
2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
2L | 19528088..19528262 | 7..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:56 Download gff for
BS08834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
arm_2L | 19527377..19527705 | 375..703 | 100 | <- | Minus |
arm_2L | 19528088..19528262 | 7..181 | 97 | | Minus |
BS08834.3prime Sequence
717 bp (716 high quality bases) assembled on 2006-01-18
> BS08834.3prime
ATGGTCTAGAAAGCTTCTACTGGGCCTGCTCCGCCTTCTTTTTGGACCGA
TACTTAAGTTTAGTTAGAAGCGATGACACCGGCGCGATAATGGTGAGTCC
ATAAACAATGCCGGTAATCAGCATCATGCCGGGAATAAAGTCAGTATCCA
CATACTTGGTAAAGAATTTCGAATAGTAGCCCAGGTAAATGGCGCCCATT
CCCAGACTAAAGGTGACCAATCCAAATAGATTATGGCGGAAGCGAAGCTC
TGATGGAGGCATTACTTTCAGGGCGAACTTGGGCTGGAAATAGTTGACAA
AACCGCCTACAATGCTGGCCGCGCAGAAAAAGGAAGCAGCTCCCCCCACT
CGGCCGTGCCAGGTGTTAAAGTGCACCTCCTTGCTGGAAAATTTACCCAG
GGAGCCCAACAGCACCATGGAGCCACCCACAATCTGCAGGATGGCGTGGA
AGCGCGACTTGTTTCGGTGCGACAGCCAACGGGTGAGCGGGTTCACTTTC
GAATGCGACATCATGGCCTGGGCGATAAGGACGTGGAATCCAGTCCCGGT
CATAAACATATGCATGGCGGTATCCTTGAACTCCAGACTGCGCGCCAGTA
TGAAAAAGAAGACGGCCACCAGAAAGATCAGAATGTGGTTGATGCTATTC
AGCAGGCTGTGGATTTGCAGCCAGGCAGTGGCTTTCGTGTAACCCTCCGC
CATGTCGACTGATAACT
BS08834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PA | 687 | CG10165-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
CG10165-PB | 687 | CG10165-RB | 1..687 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1344 | 703..17 | 3435 | 100 | Minus |
CG10165-RC | 1308 | CG10165-RC | 155..841 | 703..17 | 3435 | 100 | Minus |
CG10165-RE | 854 | CG10165-RE | 72..758 | 703..17 | 3435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527377..19527706 | 17..346 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 19527760..19527953 | 345..538 | 970 | 100 | Plus |
2L | 23513712 | 2L | 19528088..19528252 | 539..703 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:40:02 has no hits.
BS08834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:28 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:56 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:54 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 550..1246 | 17..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:12 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 62..758 | 17..713 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:12 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527761..19527953 | 346..538 | 100 | <- | Plus |
2L | 19528088..19528262 | 539..713 | 97 | | Plus |
2L | 19527377..19527705 | 17..345 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:54 Download gff for
BS08834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527377..19527705 | 17..345 | 100 | <- | Plus |
arm_2L | 19527761..19527953 | 346..538 | 100 | <- | Plus |
arm_2L | 19528088..19528262 | 539..713 | 97 | | Plus |
BS08834.complete Sequence
719 bp (719 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636289
> BS08834.complete
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
TAGAAGCTTTCTAGACCAT
BS08834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 687 | CG10165-PD | 1..687 | 17..703 | 3435 | 100 | Plus |
CG10165-RC | 687 | CG10165-PC | 1..687 | 17..703 | 3435 | 100 | Plus |
CG10165-RE | 687 | CG10165-PE | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1344 | 17..703 | 3435 | 100 | Plus |
CG10165-RC | 1308 | CG10165-RC | 155..841 | 17..703 | 3435 | 100 | Plus |
CG10165-RE | 854 | CG10165-RE | 72..758 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527377..19527706 | 703..374 | 1650 | 100 | Minus |
2L | 23513712 | 2L | 19527760..19527953 | 375..182 | 970 | 100 | Minus |
2L | 23513712 | 2L | 19528088..19528252 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:20:19 has no hits.
BS08834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:48 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:48 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 522..1218 | 7..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:45 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 560..1246 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:48 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 522..1218 | 7..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:03 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 72..758 | 17..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:03 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527377..19527705 | 375..703 | 100 | <- | Minus |
2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
2L | 19528088..19528252 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:45 Download gff for
BS08834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527377..19527705 | 375..703 | 100 | <- | Minus |
arm_2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
arm_2L | 19528088..19528252 | 17..181 | 100 | | Minus |
BS08834.pep Sequence
Translation from 16 to 702
> BS08834.pep
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQ*
BS08834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PD | 228 | CG10165-PD | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PC | 228 | CG10165-PC | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PE | 228 | CG10165-PE | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PB | 228 | CG10165-PB | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PA | 228 | CG10165-PA | 1..228 | 1..228 | 1178 | 100 | Plus |