Clone BS08834 Report

Search the DGRC for BS08834

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG10165-RA
Protein status:BS08834.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08834.5prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-18

> BS08834.5prime
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
TAGAAGCTTTCTAGACC

BS08834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PA 687 CG10165-RA 1..687 17..703 3435 100 Plus
CG10165-PB 687 CG10165-RB 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1344 17..703 3435 100 Plus
CG10165-RC 1308 CG10165-RC 155..841 17..703 3435 100 Plus
CG10165-RE 854 CG10165-RE 72..758 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527377..19527706 703..374 1650 100 Minus
2L 23513712 2L 19527760..19527953 375..182 970 100 Minus
2L 23513712 2L 19528088..19528252 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:20:37 has no hits.

BS08834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:29 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:58 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:56 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 550..1246 7..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:02 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 62..758 7..703 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:02 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19527377..19527705 375..703 100 <- Minus
2L 19527761..19527953 182..374 100 <- Minus
2L 19528088..19528262 7..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:56 Download gff for BS08834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527761..19527953 182..374 100 <- Minus
arm_2L 19527377..19527705 375..703 100 <- Minus
arm_2L 19528088..19528262 7..181 97   Minus

BS08834.3prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-18

> BS08834.3prime
ATGGTCTAGAAAGCTTCTACTGGGCCTGCTCCGCCTTCTTTTTGGACCGA
TACTTAAGTTTAGTTAGAAGCGATGACACCGGCGCGATAATGGTGAGTCC
ATAAACAATGCCGGTAATCAGCATCATGCCGGGAATAAAGTCAGTATCCA
CATACTTGGTAAAGAATTTCGAATAGTAGCCCAGGTAAATGGCGCCCATT
CCCAGACTAAAGGTGACCAATCCAAATAGATTATGGCGGAAGCGAAGCTC
TGATGGAGGCATTACTTTCAGGGCGAACTTGGGCTGGAAATAGTTGACAA
AACCGCCTACAATGCTGGCCGCGCAGAAAAAGGAAGCAGCTCCCCCCACT
CGGCCGTGCCAGGTGTTAAAGTGCACCTCCTTGCTGGAAAATTTACCCAG
GGAGCCCAACAGCACCATGGAGCCACCCACAATCTGCAGGATGGCGTGGA
AGCGCGACTTGTTTCGGTGCGACAGCCAACGGGTGAGCGGGTTCACTTTC
GAATGCGACATCATGGCCTGGGCGATAAGGACGTGGAATCCAGTCCCGGT
CATAAACATATGCATGGCGGTATCCTTGAACTCCAGACTGCGCGCCAGTA
TGAAAAAGAAGACGGCCACCAGAAAGATCAGAATGTGGTTGATGCTATTC
AGCAGGCTGTGGATTTGCAGCCAGGCAGTGGCTTTCGTGTAACCCTCCGC
CATGTCGACTGATAACT

BS08834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PA 687 CG10165-RA 1..687 703..17 3435 100 Minus
CG10165-PB 687 CG10165-RB 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1344 703..17 3435 100 Minus
CG10165-RC 1308 CG10165-RC 155..841 703..17 3435 100 Minus
CG10165-RE 854 CG10165-RE 72..758 703..17 3435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527377..19527706 17..346 1650 100 Plus
2L 23513712 2L 19527760..19527953 345..538 970 100 Plus
2L 23513712 2L 19528088..19528252 539..703 825 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:40:02 has no hits.

BS08834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:28 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:56 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:54 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 550..1246 17..713 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:12 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 62..758 17..713 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:12 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19527761..19527953 346..538 100 <- Plus
2L 19528088..19528262 539..713 97   Plus
2L 19527377..19527705 17..345 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:54 Download gff for BS08834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527377..19527705 17..345 100 <- Plus
arm_2L 19527761..19527953 346..538 100 <- Plus
arm_2L 19528088..19528262 539..713 97   Plus

BS08834.complete Sequence

719 bp (719 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636289

> BS08834.complete
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
TAGAAGCTTTCTAGACCAT

BS08834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 687 CG10165-PD 1..687 17..703 3435 100 Plus
CG10165-RC 687 CG10165-PC 1..687 17..703 3435 100 Plus
CG10165-RE 687 CG10165-PE 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1344 17..703 3435 100 Plus
CG10165-RC 1308 CG10165-RC 155..841 17..703 3435 100 Plus
CG10165-RE 854 CG10165-RE 72..758 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527377..19527706 703..374 1650 100 Minus
2L 23513712 2L 19527760..19527953 375..182 970 100 Minus
2L 23513712 2L 19528088..19528252 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:20:19 has no hits.

BS08834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:48 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:48 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 522..1218 7..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:45 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 560..1246 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:48 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 522..1218 7..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:03 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 72..758 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:03 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527377..19527705 375..703 100 <- Minus
2L 19527761..19527953 182..374 100 <- Minus
2L 19528088..19528252 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:45 Download gff for BS08834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527377..19527705 375..703 100 <- Minus
arm_2L 19527761..19527953 182..374 100 <- Minus
arm_2L 19528088..19528252 17..181 100   Minus

BS08834.pep Sequence

Translation from 16 to 702

> BS08834.pep
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQ*

BS08834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PD 228 CG10165-PD 1..228 1..228 1178 100 Plus
CG10165-PC 228 CG10165-PC 1..228 1..228 1178 100 Plus
CG10165-PE 228 CG10165-PE 1..228 1..228 1178 100 Plus
CG10165-PB 228 CG10165-PB 1..228 1..228 1178 100 Plus
CG10165-PA 228 CG10165-PA 1..228 1..228 1178 100 Plus