Clone Sequence Records
BS08836.3prime Sequence
891 bp (799 high quality bases) assembled on 2006-01-18
> BS08836.3prime
ATGGTCTAGAAAGCTTTTATCTTTCCGGGAACAGGGACTCATAGCTGGGC
GGTAGATCCTTTGGCGTGGCGGGTTGCTGTTGCTGCTGGGTATCGTGCTC
GTGCAGGACGCTATCATCGTAGTGCACCGATGGTGGCAGCTCAATGGTGG
GCACATCCGATCTGACTCGACGCTGATTGAAGCGGGCAGCGGAGGCTTCG
TGCGCCCGTTGCTGCACCGTTATGCAGTTCCAATACTTCCAGCAGATCCA
CACACAAAAACCCACGCCCACCATGGTAAAGATGAGCGAGGTCAGCGCCG
ATATAGCCACATTGGCCGTATCGATCTCCGGCACAATGGCGTCGTGAAAG
CAGGTGCCCTCGTCGCGGCACGGATACAGGCAATTGGTGATATTGTCCCG
CACAAAATGACGCGAAATGCACGAGTACTGGTCGTTGGGCTCGCAAAGGA
AGTCTCCATTAAACTGGCACTCCGAGTGTGCCGTTAGCACCATGCGCAGC
TCCAGGGGATCGCCTAGTATATGACGCGATCGATCGATAAATATGTGCAC
GTTGACGTCGCGATCACGCTGATCGAAGATCAGACGTCCCGCCGGGCCAT
CAATGGAGATGTCCGTGCAAATGCGTTCGCTGGGCGAGCGATTGCCGCTG
CTGAACTGAATGTAGTCGATGCACTCCTTGGAAACGGGGTCGCGCCGAAA
CTTAAGCCGCGTAATGATAGTGTAAATGCCGCGTCGCGGTCGCTCGCTGG
TCACCACCCTAAACTGGCAATCGTACTTAATCTTGTTGGCCGTATGGCCG
TGGGGCAGTGTCAAATTCCACATCTGCGTCACGATCGCTCCGGAGGTGTC
CTCGAACTCCAGCCGCACAGTCGGATCGCCACGGAACGGCT
BS08836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-PA | 1008 | CG18870-RA | 134..1008 | 891..17 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-RB | 2937 | CG18870-RB | 314..1189 | 891..16 | 4380 | 100 | Minus |
CG18870-RA | 2019 | CG18870-RA | 314..1189 | 891..16 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21615805..21616535 | 161..891 | 3655 | 100 | Plus |
2R | 25286936 | 2R | 21615593..21615737 | 16..160 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:09:00 has no hits.
BS08836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:30 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-PA | 134..1008 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:00 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-PA | 134..1008 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:26 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 314..1189 | 16..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:23 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 314..1189 | 16..891 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:23 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21615593..21615737 | 16..160 | 100 | <- | Plus |
2R | 21615805..21616535 | 161..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:26 Download gff for
BS08836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17503098..17503242 | 16..160 | 100 | <- | Plus |
arm_2R | 17503310..17504040 | 161..891 | 100 | | Plus |
BS08836.5prime Sequence
924 bp (774 high quality bases) assembled on 2006-01-18
> BS08836.5prime
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAAGCCTCC
GCTGCCCGCTTCAATCAGCGTCGAGTCAAATCGGATGTGCCCCACATTGA
CCTGCCACCATCGGTGCACTACGA
BS08836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-PA | 1008 | CG18870-RA | 1..908 | 17..924 | 4440 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-RB | 2937 | CG18870-RB | 177..1088 | 13..924 | 4500 | 99.6 | Plus |
CG18870-RA | 2019 | CG18870-RA | 177..1088 | 13..924 | 4500 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21615807..21616587 | 878..98 | 3905 | 100 | Minus |
2R | 25286936 | 2R | 21616646..21616731 | 98..13 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:31:51 has no hits.
BS08836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:31 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:01 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:57 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 177..1087 | 13..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:22 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 177..1087 | 13..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:22 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21615695..21615737 | 881..923 | 93 | <- | Minus |
2R | 21615805..21616586 | 99..880 | 99 | <- | Minus |
2R | 21616646..21616731 | 13..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:57 Download gff for
BS08836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17503200..17503242 | 881..923 | 93 | <- | Minus |
arm_2R | 17503310..17504091 | 99..880 | 99 | <- | Minus |
arm_2R | 17504151..17504236 | 13..98 | 100 | | Minus |
BS08836.complete Sequence
1040 bp (1040 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636290
> BS08836.complete
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAAGCCTCC
GCTGCCCGCTTCAATCAGCGTCGAGTCAGATCGGATGTGCCCACCATTGA
GCTGCCACCATCGGTGCACTACGATGATAGCGTCCTGCACGAGCACGATA
CCCAGCAGCAACAGCAACCCGCCACGCCAAAGGATCTACCGCCCAGCTAT
GAGTCCCTGTTCCCGGAAAGATAAAAGCTTTCTAGACCAT
BS08836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-RB | 1008 | CG18870-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG18870-RA | 1008 | CG18870-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-RB | 2937 | CG18870-RB | 177..1189 | 13..1025 | 5065 | 100 | Plus |
CG18870-RA | 2019 | CG18870-RA | 177..1189 | 13..1025 | 5065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21615805..21616587 | 880..98 | 3915 | 100 | Minus |
2R | 25286936 | 2R | 21615593..21615737 | 1025..881 | 725 | 100 | Minus |
2R | 25286936 | 2R | 21616646..21616731 | 98..13 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:33:56 has no hits.
BS08836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:53 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:01 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 163..1175 | 13..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:21 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 186..1180 | 22..1016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:53 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 137..1149 | 13..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:49 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18870-RA | 186..1180 | 22..1016 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:49 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21615602..21615737 | 881..1016 | 100 | <- | Minus |
2R | 21615805..21616586 | 99..880 | 100 | <- | Minus |
2R | 21616646..21616722 | 22..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:21 Download gff for
BS08836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17504151..17504227 | 22..98 | 100 | | Minus |
arm_2R | 17503107..17503242 | 881..1016 | 100 | <- | Minus |
arm_2R | 17503310..17504091 | 99..880 | 100 | <- | Minus |
BS08836.pep Sequence
Translation from 16 to 1023
> BS08836.pep
MLVKCCIGFGSLWPLAMMVAFCTAYKNVRLQDNMCSDKLFYTLAKPFRGD
PTVRLEFEDTSGAIVTQMWNLTLPHGHTANKIKYDCQFRVVTSERPRRGI
YTIITRLKFRRDPVSKECIDYIQFSSGNRSPSERICTDISIDGPAGRLIF
DQRDRDVNVHIFIDRSRHILGDPLELRMVLTAHSECQFNGDFLCEPNDQY
SCISRHFVRDNITNCLYPCRDEGTCFHDAIVPEIDTANVAISALTSLIFT
MVGVGFCVWICWKYWNCITVQQRAHEASAARFNQRRVRSDVPTIELPPSV
HYDDSVLHEHDTQQQQQPATPKDLPPSYESLFPER*
BS08836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18870-PB | 335 | CG18870-PB | 1..335 | 1..335 | 1824 | 100 | Plus |
CG18870-PA | 335 | CG18870-PA | 1..335 | 1..335 | 1824 | 100 | Plus |