Clone BS08836 Report

Search the DGRC for BS08836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG18870-RA
Protein status:BS08836.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08836.3prime Sequence

891 bp (799 high quality bases) assembled on 2006-01-18

> BS08836.3prime
ATGGTCTAGAAAGCTTTTATCTTTCCGGGAACAGGGACTCATAGCTGGGC
GGTAGATCCTTTGGCGTGGCGGGTTGCTGTTGCTGCTGGGTATCGTGCTC
GTGCAGGACGCTATCATCGTAGTGCACCGATGGTGGCAGCTCAATGGTGG
GCACATCCGATCTGACTCGACGCTGATTGAAGCGGGCAGCGGAGGCTTCG
TGCGCCCGTTGCTGCACCGTTATGCAGTTCCAATACTTCCAGCAGATCCA
CACACAAAAACCCACGCCCACCATGGTAAAGATGAGCGAGGTCAGCGCCG
ATATAGCCACATTGGCCGTATCGATCTCCGGCACAATGGCGTCGTGAAAG
CAGGTGCCCTCGTCGCGGCACGGATACAGGCAATTGGTGATATTGTCCCG
CACAAAATGACGCGAAATGCACGAGTACTGGTCGTTGGGCTCGCAAAGGA
AGTCTCCATTAAACTGGCACTCCGAGTGTGCCGTTAGCACCATGCGCAGC
TCCAGGGGATCGCCTAGTATATGACGCGATCGATCGATAAATATGTGCAC
GTTGACGTCGCGATCACGCTGATCGAAGATCAGACGTCCCGCCGGGCCAT
CAATGGAGATGTCCGTGCAAATGCGTTCGCTGGGCGAGCGATTGCCGCTG
CTGAACTGAATGTAGTCGATGCACTCCTTGGAAACGGGGTCGCGCCGAAA
CTTAAGCCGCGTAATGATAGTGTAAATGCCGCGTCGCGGTCGCTCGCTGG
TCACCACCCTAAACTGGCAATCGTACTTAATCTTGTTGGCCGTATGGCCG
TGGGGCAGTGTCAAATTCCACATCTGCGTCACGATCGCTCCGGAGGTGTC
CTCGAACTCCAGCCGCACAGTCGGATCGCCACGGAACGGCT

BS08836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-PA 1008 CG18870-RA 134..1008 891..17 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-RB 2937 CG18870-RB 314..1189 891..16 4380 100 Minus
CG18870-RA 2019 CG18870-RA 314..1189 891..16 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21615805..21616535 161..891 3655 100 Plus
2R 25286936 2R 21615593..21615737 16..160 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:09:00 has no hits.

BS08836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:30 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-PA 134..1008 17..891 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:00 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-PA 134..1008 17..891 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:26 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 314..1189 16..891 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:23 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 314..1189 16..891 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:23 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21615593..21615737 16..160 100 <- Plus
2R 21615805..21616535 161..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:26 Download gff for BS08836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17503098..17503242 16..160 100 <- Plus
arm_2R 17503310..17504040 161..891 100   Plus

BS08836.5prime Sequence

924 bp (774 high quality bases) assembled on 2006-01-18

> BS08836.5prime
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAAGCCTCC
GCTGCCCGCTTCAATCAGCGTCGAGTCAAATCGGATGTGCCCCACATTGA
CCTGCCACCATCGGTGCACTACGA

BS08836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-PA 1008 CG18870-RA 1..908 17..924 4440 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-RB 2937 CG18870-RB 177..1088 13..924 4500 99.6 Plus
CG18870-RA 2019 CG18870-RA 177..1088 13..924 4500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21615807..21616587 878..98 3905 100 Minus
2R 25286936 2R 21616646..21616731 98..13 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:31:51 has no hits.

BS08836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:31 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:01 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:57 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 177..1087 13..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:22 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 177..1087 13..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:22 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21615695..21615737 881..923 93 <- Minus
2R 21615805..21616586 99..880 99 <- Minus
2R 21616646..21616731 13..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:57 Download gff for BS08836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17503200..17503242 881..923 93 <- Minus
arm_2R 17503310..17504091 99..880 99 <- Minus
arm_2R 17504151..17504236 13..98 100   Minus

BS08836.complete Sequence

1040 bp (1040 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636290

> BS08836.complete
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAAGCCTCC
GCTGCCCGCTTCAATCAGCGTCGAGTCAGATCGGATGTGCCCACCATTGA
GCTGCCACCATCGGTGCACTACGATGATAGCGTCCTGCACGAGCACGATA
CCCAGCAGCAACAGCAACCCGCCACGCCAAAGGATCTACCGCCCAGCTAT
GAGTCCCTGTTCCCGGAAAGATAAAAGCTTTCTAGACCAT

BS08836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-RB 1008 CG18870-PB 1..1008 17..1024 5040 100 Plus
CG18870-RA 1008 CG18870-PA 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-RB 2937 CG18870-RB 177..1189 13..1025 5065 100 Plus
CG18870-RA 2019 CG18870-RA 177..1189 13..1025 5065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21615805..21616587 880..98 3915 100 Minus
2R 25286936 2R 21615593..21615737 1025..881 725 100 Minus
2R 25286936 2R 21616646..21616731 98..13 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:33:56 has no hits.

BS08836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:53 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 1..1008 17..1024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:01 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 163..1175 13..1025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:21 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 186..1180 22..1016 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:53 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 137..1149 13..1025 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:49 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
CG18870-RA 186..1180 22..1016 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:49 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21615602..21615737 881..1016 100 <- Minus
2R 21615805..21616586 99..880 100 <- Minus
2R 21616646..21616722 22..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:21 Download gff for BS08836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17504151..17504227 22..98 100   Minus
arm_2R 17503107..17503242 881..1016 100 <- Minus
arm_2R 17503310..17504091 99..880 100 <- Minus

BS08836.pep Sequence

Translation from 16 to 1023

> BS08836.pep
MLVKCCIGFGSLWPLAMMVAFCTAYKNVRLQDNMCSDKLFYTLAKPFRGD
PTVRLEFEDTSGAIVTQMWNLTLPHGHTANKIKYDCQFRVVTSERPRRGI
YTIITRLKFRRDPVSKECIDYIQFSSGNRSPSERICTDISIDGPAGRLIF
DQRDRDVNVHIFIDRSRHILGDPLELRMVLTAHSECQFNGDFLCEPNDQY
SCISRHFVRDNITNCLYPCRDEGTCFHDAIVPEIDTANVAISALTSLIFT
MVGVGFCVWICWKYWNCITVQQRAHEASAARFNQRRVRSDVPTIELPPSV
HYDDSVLHEHDTQQQQQPATPKDLPPSYESLFPER*

BS08836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18870-PB 335 CG18870-PB 1..335 1..335 1824 100 Plus
CG18870-PA 335 CG18870-PA 1..335 1..335 1824 100 Plus