Clone BS08838 Report

Search the DGRC for BS08838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptergic53-RA
Protein status:BS08838.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08838.3prime Sequence

904 bp (845 high quality bases) assembled on 2006-01-18

> BS08838.3prime
ATGGTCTAGAAAGCTTCTAATAGAACTTTTTCGCCTGTGCTTCGCTGCGG
TTTTTGAAGACGTTGTAGATGAAGACTAGCAGCAGTTGCACAACAGTTAC
GCTTAGGAACAATGTGACTCCAACGCAATTGCCCGTGGGACAATTGGCCA
CCTGCGCTGCTCCCTGTGGCGCTGCCAATCTTTGGCCCACGTGGGTGATG
CCCTGCTTGACCTGATTCATGCCATCGCGCATCTCGGCGATGAGCGTTTG
TACATCATAGCCGGTGGATTGGATTTGTGCTGTGGGCGCATGCTTCTGAT
TCGTTTGAATGTTATCAGTGCGCACATTGATATCGCCAACCAGTTGACGA
ATCTCGCGGATGGAACTGAGCAGCATGTTCTGATTAGTGAGCAGAAGATC
TACATCGCTCCTGCTGACTGCGCCAACGGGCAGCTGTTGCTGTGGCACTC
CGCCGGCGGCGGGCGGAGGCAGAGCCTGTCCAGCATTACGTGAGACCAGC
GACAGCGTGGTCTCCTGGCGGCCAATAATCTCATCCACTTTGCGGGAAAG
TTCGCGTAGGTGATCGGCAATTTGGCTCTGACCCTGCCAGATCTGACGCA
GCTCACGCTGGTTCTCCGACTCGTAGAACTCCTCCCAGTCCTCCTCGTCT
TTGTGCTCGTCGGGATGGTCCTTCTTGTACTCCTGCTTCTGTTTCTCCAG
TTTATCTTGGTATTCCTTGTACTCTTGCGTAAGCTTCTCCTGGTTTTCCA
CCTTGGGCTGCTCCTGAACTTGTCCAGCGGCATGCAACGACGTGGTCAGG
AAATGGAACACATCGTGGTCATCGGCCAGACCGCCCGTGGCGGCGGAAAT
GCAAAGTAGCCGTTCTTGGGCAGATTGACGCCATCCGCTCTCAGACACAG
CTCG

BS08838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6822-PA 1539 ergic53-RA 704..1539 852..17 4180 100 Minus
CG6822-PB 1539 ergic53-RB 704..1539 852..17 4180 100 Minus
CG6822-PA 1539 ergic53-RA 651..703 904..852 265 100 Minus
CG6822-PB 1539 ergic53-RB 651..703 904..852 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-RB 2463 CG6822-RB 680..1568 904..17 4420 99.9 Minus
ergic53-RA 2031 CG6822-RA 680..1568 904..17 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8536166..8536643 657..180 2390 100 Minus
3L 28110227 3L 8535843..8536092 904..656 1200 99.6 Minus
3L 28110227 3L 8536889..8537016 181..54 640 100 Minus
3L 28110227 3L 8537082..8537118 53..17 185 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:59:54 has no hits.

BS08838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:34 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6822-PA 651..1539 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:06 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6822-PB 651..1539 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:47 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 680..1576 9..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:48 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 680..1576 9..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:48 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8535843..8536092 656..904 99 -> Minus
3L 8536168..8536643 180..655 100 -> Minus
3L 8536891..8537016 54..179 100 -> Minus
3L 8537082..8537126 9..53 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:47 Download gff for BS08838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8528943..8529192 656..904 99 -> Minus
arm_3L 8529268..8529743 180..655 100 -> Minus
arm_3L 8529991..8530116 54..179 100 -> Minus
arm_3L 8530182..8530226 9..53 91   Minus

BS08838.5prime Sequence

894 bp (803 high quality bases) assembled on 2006-01-18

> BS08838.5prime
GAAGTTATCAGTCGACATGCGGCCCACATTCCTGGCCATTTTGTGCTTCC
TGGCGTGGAATCCCAGCTCCGAGGCGACCGGCAATCTGAGTCCTGGAGCC
GTGGGCGTGCACCGTCGCTTCGAGTACAAGTACTCGTTCAAGCCGCCGTA
TTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAAATG
CCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCACAG
AAGGGTGCCATCTGGACAAAGTCACAGACGAACTTCGACTGGTGGGACGT
GGAGATCGTGTTCCGGGTGACGGGACGTGGCAGGATCGGAGCCGATGGAT
TGGCCTTCTGGTACACCACGGAAAAGGGTGACTACAATGGGCCTGTGTTC
GGATCCTCGGACCGCTGGAATGGTCTGGCCATCATGTTCGATTCCTTCGA
TAATGACAACAAGCACAACAATCCTTACATCAGTGCCGTGCTCAATGATG
GCACCAAGCTGTATGACCATGCCGAAGATGGAACCACTCAGCTCCTGAGC
GGTTGCCTCAGGGATTTCCGTAACAAGCCCTTCCCTACACGGGCGCGAAT
CGAGTACTACAACAACGTGCTTACCGTCATGATCCACAACGGAATGTCCA
ACAACAACGATGACTACGAGCTGTGTCTGAGAGCGGATGGCGTCAATCTG
CCCAAGAACGGCTACTTTGGCATTTCCGCCGCCACGGGCGGTCTGGCCGA
TGACCACGATGTGTTCCATTTCCTGACCACGTCGTTGCATGCCGCTGGAC
AAGTTCAGGAGCAGCCCAAGGTGGAAAACCAGGAGAAGCTTACGCAAGAG
TACAGGGAATACCAAGATAAACTGGAGAAACAGAAGCAGGAGTA

BS08838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6822-PA 1539 ergic53-RA 1..878 17..894 4365 99.8 Plus
CG6822-PB 1539 ergic53-RB 1..878 17..894 4365 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-RB 2463 CG6822-RB 30..907 17..894 4375 99.9 Plus
ergic53-RA 2031 CG6822-RA 30..907 17..894 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8535374..8536070 198..894 3470 99.9 Plus
3L 28110227 3L 8535006..8535186 17..197 905 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:59:40 has no hits.

BS08838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:36 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6822-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:08 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6822-PB 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:40 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 30..906 17..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:39 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 30..906 17..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:39 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8535006..8535186 17..197 100 -> Plus
3L 8535374..8536069 198..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:40 Download gff for BS08838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8528106..8528286 17..197 100 -> Plus
arm_3L 8528474..8529169 198..893 99   Plus

BS08838.complete Sequence

1571 bp (1571 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636291

> BS08838.complete
GAAGTTATCAGTCGACATGCGGCCCACATTCCTGGCCATTTTGTGCTTCC
TGGCGTGGAATCCCAGCTCCGAGGCGACCGGCAATCTGAGTCCTGGAGCC
GTGGGCGTGCACCGTCGCTTCGAGTACAAGTACTCGTTCAAGCCGCCGTA
TTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAAATG
CCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCACAG
AAGGGTGCCATCTGGACAAAGTCACAGACGAACTTCGACTGGTGGGACGT
GGAGATCGTGTTCCGGGTGACGGGACGTGGCAGGATCGGAGCCGATGGAT
TGGCCTTCTGGTACACCACGGAAAAGGGTGACTACAATGGGCCTGTGTTC
GGATCCTCGGACCGCTGGAATGGTCTGGCCATCATGTTCGATTCCTTCGA
TAATGACAACAAGCACAACAATCCTTACATCAGTGCCGTGCTCAATGATG
GCACCAAGCTGTATGACCATGCCGAAGATGGAACCACTCAGCTCCTGAGC
GGTTGCCTCAGGGATTTCCGTAACAAGCCCTTCCCTACACGGGCGCGAAT
CGAGTACTACAACAACGTGCTTACCGTCATGATCCACAACGGAATGTCCA
ACAACAACGATGACTACGAGCTGTGTCTGAGAGCGGATGGCGTCAATCTG
CCCAAGAACGGCTACTTTGGCATTTCCGCCGCCACGGGCGGTCTGGCCGA
TGACCACGATGTGTTCCATTTCCTGACCACGTCGTTGCATGCCGCTGGAC
AAGTTCAGGAGCAGCCCAAGGTGGAAAACCAGGAGAAGCTTACGCAAGAG
TACAAGGAATACCAAGATAAACTGGAGAAACAGAAGCAGGAGTACAAGAA
GGACCATCCCGACGAGCACAAAGACGAGGAGGACTGGGAGGAGTTCTACG
AGTCGGAGAACCAGCGTGAGCTGCGTCAGATCTGGCAGGGTCAGAGCCAA
ATTGCCGATCACCTACGCGAACTTTCCCGCAAAGTGGATGAGATTATTGG
CCGCCAGGAGACCACGCTGTCGCTGGTCTCACGTAATGCTGGACAGGCTC
TGCCTCCGCCCGCCGCCGGCGGAGTGCCACAGCAACAGCTGCCCGTTGGC
GCAGTCAGCAGGAGCGATGTAGATCTTCTGCTCACTAATCAGAACATGCT
GCTCAGTTCCATCCGCGAGATTCGTCAACTGGTTGGCGATATCAATGTGC
GCACTGATAACATTCAAACGAATCAGAAGCATGCGCCCACAGCACAAATC
CAATCCACCGGCTATGATGTACAAACGCTCATCGCCGAGATGCGCGATGG
CATGAATCAGGTCAAGCAGGGCATCACCCACGTGGGCCAAAGATTGGCAG
CGCCACAGGGAGCAGCGCAGGTGGCCAATTGTCCCACGGGCAATTGCGTT
GGAGTCACATTGTTCCTAAGCGTAACTGTTGTGCAACTGCTGCTAGTCTT
CATCTACAACGTCTTCAAAAACCGCAGCGAAGCACAGGCGAAAAAGTTCT
ATTAGAAGCTTTCTAGACCAT

BS08838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-RB 1539 CG6822-PB 1..1539 17..1555 7695 100 Plus
ergic53-RA 1539 CG6822-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-RB 2463 CG6822-RB 30..1568 17..1555 7695 100 Plus
ergic53-RA 2031 CG6822-RA 30..1568 17..1555 7695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8535374..8536092 198..916 3595 100 Plus
3L 28110227 3L 8536166..8536643 915..1392 2390 100 Plus
3L 28110227 3L 8535006..8535186 17..197 905 100 Plus
3L 28110227 3L 8536889..8537016 1391..1518 640 100 Plus
3L 28110227 3L 8537082..8537118 1519..1555 185 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:40:47 has no hits.

BS08838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:54 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 1..1539 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:03 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 55..1601 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:13 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 30..1568 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:55 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RB 55..1601 17..1563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:59 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
ergic53-RA 30..1568 17..1555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:59 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8535006..8535186 17..197 100 -> Plus
3L 8535374..8536092 198..916 100 -> Plus
3L 8536168..8536643 917..1392 100 -> Plus
3L 8536891..8537016 1393..1518 100 -> Plus
3L 8537082..8537118 1519..1555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:13 Download gff for BS08838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8528106..8528286 17..197 100 -> Plus
arm_3L 8528474..8529192 198..916 100 -> Plus
arm_3L 8529268..8529743 917..1392 100 -> Plus
arm_3L 8529991..8530116 1393..1518 100 -> Plus
arm_3L 8530182..8530218 1519..1555 100   Plus

BS08838.pep Sequence

Translation from 16 to 1554

> BS08838.pep
MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKD
GTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFR
VTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKH
NNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNN
VLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVF
HFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDE
HKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETT
LSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIR
EIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVK
QGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVF
KNRSEAQAKKFY*

BS08838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
ergic53-PB 512 CG6822-PB 1..512 1..512 2711 100 Plus
ergic53-PA 512 CG6822-PA 1..512 1..512 2711 100 Plus
CG5510-PA 329 CG5510-PA 52..251 53..252 404 39.7 Plus