Clone Sequence Records
BS08838.3prime Sequence
904 bp (845 high quality bases) assembled on 2006-01-18
> BS08838.3prime
ATGGTCTAGAAAGCTTCTAATAGAACTTTTTCGCCTGTGCTTCGCTGCGG
TTTTTGAAGACGTTGTAGATGAAGACTAGCAGCAGTTGCACAACAGTTAC
GCTTAGGAACAATGTGACTCCAACGCAATTGCCCGTGGGACAATTGGCCA
CCTGCGCTGCTCCCTGTGGCGCTGCCAATCTTTGGCCCACGTGGGTGATG
CCCTGCTTGACCTGATTCATGCCATCGCGCATCTCGGCGATGAGCGTTTG
TACATCATAGCCGGTGGATTGGATTTGTGCTGTGGGCGCATGCTTCTGAT
TCGTTTGAATGTTATCAGTGCGCACATTGATATCGCCAACCAGTTGACGA
ATCTCGCGGATGGAACTGAGCAGCATGTTCTGATTAGTGAGCAGAAGATC
TACATCGCTCCTGCTGACTGCGCCAACGGGCAGCTGTTGCTGTGGCACTC
CGCCGGCGGCGGGCGGAGGCAGAGCCTGTCCAGCATTACGTGAGACCAGC
GACAGCGTGGTCTCCTGGCGGCCAATAATCTCATCCACTTTGCGGGAAAG
TTCGCGTAGGTGATCGGCAATTTGGCTCTGACCCTGCCAGATCTGACGCA
GCTCACGCTGGTTCTCCGACTCGTAGAACTCCTCCCAGTCCTCCTCGTCT
TTGTGCTCGTCGGGATGGTCCTTCTTGTACTCCTGCTTCTGTTTCTCCAG
TTTATCTTGGTATTCCTTGTACTCTTGCGTAAGCTTCTCCTGGTTTTCCA
CCTTGGGCTGCTCCTGAACTTGTCCAGCGGCATGCAACGACGTGGTCAGG
AAATGGAACACATCGTGGTCATCGGCCAGACCGCCCGTGGCGGCGGAAAT
GCAAAGTAGCCGTTCTTGGGCAGATTGACGCCATCCGCTCTCAGACACAG
CTCG
BS08838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6822-PA | 1539 | ergic53-RA | 704..1539 | 852..17 | 4180 | 100 | Minus |
CG6822-PB | 1539 | ergic53-RB | 704..1539 | 852..17 | 4180 | 100 | Minus |
CG6822-PA | 1539 | ergic53-RA | 651..703 | 904..852 | 265 | 100 | Minus |
CG6822-PB | 1539 | ergic53-RB | 651..703 | 904..852 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ergic53-RB | 2463 | CG6822-RB | 680..1568 | 904..17 | 4420 | 99.9 | Minus |
ergic53-RA | 2031 | CG6822-RA | 680..1568 | 904..17 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8536166..8536643 | 657..180 | 2390 | 100 | Minus |
3L | 28110227 | 3L | 8535843..8536092 | 904..656 | 1200 | 99.6 | Minus |
3L | 28110227 | 3L | 8536889..8537016 | 181..54 | 640 | 100 | Minus |
3L | 28110227 | 3L | 8537082..8537118 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:59:54 has no hits.
BS08838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:34 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6822-PA | 651..1539 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:06 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6822-PB | 651..1539 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:47 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 680..1576 | 9..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:48 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 680..1576 | 9..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:48 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8535843..8536092 | 656..904 | 99 | -> | Minus |
3L | 8536168..8536643 | 180..655 | 100 | -> | Minus |
3L | 8536891..8537016 | 54..179 | 100 | -> | Minus |
3L | 8537082..8537126 | 9..53 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:47 Download gff for
BS08838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8528943..8529192 | 656..904 | 99 | -> | Minus |
arm_3L | 8529268..8529743 | 180..655 | 100 | -> | Minus |
arm_3L | 8529991..8530116 | 54..179 | 100 | -> | Minus |
arm_3L | 8530182..8530226 | 9..53 | 91 | | Minus |
BS08838.5prime Sequence
894 bp (803 high quality bases) assembled on 2006-01-18
> BS08838.5prime
GAAGTTATCAGTCGACATGCGGCCCACATTCCTGGCCATTTTGTGCTTCC
TGGCGTGGAATCCCAGCTCCGAGGCGACCGGCAATCTGAGTCCTGGAGCC
GTGGGCGTGCACCGTCGCTTCGAGTACAAGTACTCGTTCAAGCCGCCGTA
TTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAAATG
CCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCACAG
AAGGGTGCCATCTGGACAAAGTCACAGACGAACTTCGACTGGTGGGACGT
GGAGATCGTGTTCCGGGTGACGGGACGTGGCAGGATCGGAGCCGATGGAT
TGGCCTTCTGGTACACCACGGAAAAGGGTGACTACAATGGGCCTGTGTTC
GGATCCTCGGACCGCTGGAATGGTCTGGCCATCATGTTCGATTCCTTCGA
TAATGACAACAAGCACAACAATCCTTACATCAGTGCCGTGCTCAATGATG
GCACCAAGCTGTATGACCATGCCGAAGATGGAACCACTCAGCTCCTGAGC
GGTTGCCTCAGGGATTTCCGTAACAAGCCCTTCCCTACACGGGCGCGAAT
CGAGTACTACAACAACGTGCTTACCGTCATGATCCACAACGGAATGTCCA
ACAACAACGATGACTACGAGCTGTGTCTGAGAGCGGATGGCGTCAATCTG
CCCAAGAACGGCTACTTTGGCATTTCCGCCGCCACGGGCGGTCTGGCCGA
TGACCACGATGTGTTCCATTTCCTGACCACGTCGTTGCATGCCGCTGGAC
AAGTTCAGGAGCAGCCCAAGGTGGAAAACCAGGAGAAGCTTACGCAAGAG
TACAGGGAATACCAAGATAAACTGGAGAAACAGAAGCAGGAGTA
BS08838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6822-PA | 1539 | ergic53-RA | 1..878 | 17..894 | 4365 | 99.8 | Plus |
CG6822-PB | 1539 | ergic53-RB | 1..878 | 17..894 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ergic53-RB | 2463 | CG6822-RB | 30..907 | 17..894 | 4375 | 99.9 | Plus |
ergic53-RA | 2031 | CG6822-RA | 30..907 | 17..894 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8535374..8536070 | 198..894 | 3470 | 99.9 | Plus |
3L | 28110227 | 3L | 8535006..8535186 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:59:40 has no hits.
BS08838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:36 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6822-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:08 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6822-PB | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:40 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 30..906 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:39 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 30..906 | 17..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:39 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8535006..8535186 | 17..197 | 100 | -> | Plus |
3L | 8535374..8536069 | 198..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:40 Download gff for
BS08838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8528106..8528286 | 17..197 | 100 | -> | Plus |
arm_3L | 8528474..8529169 | 198..893 | 99 | | Plus |
BS08838.complete Sequence
1571 bp (1571 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636291
> BS08838.complete
GAAGTTATCAGTCGACATGCGGCCCACATTCCTGGCCATTTTGTGCTTCC
TGGCGTGGAATCCCAGCTCCGAGGCGACCGGCAATCTGAGTCCTGGAGCC
GTGGGCGTGCACCGTCGCTTCGAGTACAAGTACTCGTTCAAGCCGCCGTA
TTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAAATG
CCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCACAG
AAGGGTGCCATCTGGACAAAGTCACAGACGAACTTCGACTGGTGGGACGT
GGAGATCGTGTTCCGGGTGACGGGACGTGGCAGGATCGGAGCCGATGGAT
TGGCCTTCTGGTACACCACGGAAAAGGGTGACTACAATGGGCCTGTGTTC
GGATCCTCGGACCGCTGGAATGGTCTGGCCATCATGTTCGATTCCTTCGA
TAATGACAACAAGCACAACAATCCTTACATCAGTGCCGTGCTCAATGATG
GCACCAAGCTGTATGACCATGCCGAAGATGGAACCACTCAGCTCCTGAGC
GGTTGCCTCAGGGATTTCCGTAACAAGCCCTTCCCTACACGGGCGCGAAT
CGAGTACTACAACAACGTGCTTACCGTCATGATCCACAACGGAATGTCCA
ACAACAACGATGACTACGAGCTGTGTCTGAGAGCGGATGGCGTCAATCTG
CCCAAGAACGGCTACTTTGGCATTTCCGCCGCCACGGGCGGTCTGGCCGA
TGACCACGATGTGTTCCATTTCCTGACCACGTCGTTGCATGCCGCTGGAC
AAGTTCAGGAGCAGCCCAAGGTGGAAAACCAGGAGAAGCTTACGCAAGAG
TACAAGGAATACCAAGATAAACTGGAGAAACAGAAGCAGGAGTACAAGAA
GGACCATCCCGACGAGCACAAAGACGAGGAGGACTGGGAGGAGTTCTACG
AGTCGGAGAACCAGCGTGAGCTGCGTCAGATCTGGCAGGGTCAGAGCCAA
ATTGCCGATCACCTACGCGAACTTTCCCGCAAAGTGGATGAGATTATTGG
CCGCCAGGAGACCACGCTGTCGCTGGTCTCACGTAATGCTGGACAGGCTC
TGCCTCCGCCCGCCGCCGGCGGAGTGCCACAGCAACAGCTGCCCGTTGGC
GCAGTCAGCAGGAGCGATGTAGATCTTCTGCTCACTAATCAGAACATGCT
GCTCAGTTCCATCCGCGAGATTCGTCAACTGGTTGGCGATATCAATGTGC
GCACTGATAACATTCAAACGAATCAGAAGCATGCGCCCACAGCACAAATC
CAATCCACCGGCTATGATGTACAAACGCTCATCGCCGAGATGCGCGATGG
CATGAATCAGGTCAAGCAGGGCATCACCCACGTGGGCCAAAGATTGGCAG
CGCCACAGGGAGCAGCGCAGGTGGCCAATTGTCCCACGGGCAATTGCGTT
GGAGTCACATTGTTCCTAAGCGTAACTGTTGTGCAACTGCTGCTAGTCTT
CATCTACAACGTCTTCAAAAACCGCAGCGAAGCACAGGCGAAAAAGTTCT
ATTAGAAGCTTTCTAGACCAT
BS08838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ergic53-RB | 1539 | CG6822-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
ergic53-RA | 1539 | CG6822-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ergic53-RB | 2463 | CG6822-RB | 30..1568 | 17..1555 | 7695 | 100 | Plus |
ergic53-RA | 2031 | CG6822-RA | 30..1568 | 17..1555 | 7695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8535374..8536092 | 198..916 | 3595 | 100 | Plus |
3L | 28110227 | 3L | 8536166..8536643 | 915..1392 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 8535006..8535186 | 17..197 | 905 | 100 | Plus |
3L | 28110227 | 3L | 8536889..8537016 | 1391..1518 | 640 | 100 | Plus |
3L | 28110227 | 3L | 8537082..8537118 | 1519..1555 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:47 has no hits.
BS08838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:54 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RB | 1..1539 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:03 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RB | 55..1601 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:13 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 30..1568 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:55 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RB | 55..1601 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:59 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ergic53-RA | 30..1568 | 17..1555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:59 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8535006..8535186 | 17..197 | 100 | -> | Plus |
3L | 8535374..8536092 | 198..916 | 100 | -> | Plus |
3L | 8536168..8536643 | 917..1392 | 100 | -> | Plus |
3L | 8536891..8537016 | 1393..1518 | 100 | -> | Plus |
3L | 8537082..8537118 | 1519..1555 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:13 Download gff for
BS08838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8528106..8528286 | 17..197 | 100 | -> | Plus |
arm_3L | 8528474..8529192 | 198..916 | 100 | -> | Plus |
arm_3L | 8529268..8529743 | 917..1392 | 100 | -> | Plus |
arm_3L | 8529991..8530116 | 1393..1518 | 100 | -> | Plus |
arm_3L | 8530182..8530218 | 1519..1555 | 100 | | Plus |
BS08838.pep Sequence
Translation from 16 to 1554
> BS08838.pep
MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKD
GTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFR
VTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKH
NNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNN
VLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVF
HFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDE
HKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETT
LSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIR
EIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVK
QGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVF
KNRSEAQAKKFY*
BS08838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ergic53-PB | 512 | CG6822-PB | 1..512 | 1..512 | 2711 | 100 | Plus |
ergic53-PA | 512 | CG6822-PA | 1..512 | 1..512 | 2711 | 100 | Plus |
CG5510-PA | 329 | CG5510-PA | 52..251 | 53..252 | 404 | 39.7 | Plus |