Clone Sequence Records
BS08839.3prime Sequence
937 bp (820 high quality bases) assembled on 2006-01-18
> BS08839.3prime
ATGGTCTAGAAAGCTTCTAGATTCGGGCGAGTTGAGCAGTTGTCGAGGAT
CCGGCGGAGACGCAAAGTTCGGCGCCGTGGTTGCTTCCACCCTCCCGGGA
AATGCTCTTCACGTGGATGTGGCTCTTGAGCATTGCAGCACGAAGAACAA
GCATGCGGGTATGACGCTGGTACTGCTTGCCCATGATCAAAGCCCGCTCA
AAGGTGCTGTTCCTTTGATCCGCCTCCTTGGCGAACAGGATCTTATTGTG
GGAGTCAATACGCGCCTGGATCTGTCCGTCTAATATCAACTGCATCACCT
CGTTCTCCAGATCGCCCACCGACGAGTTAAATGCCATGGCCATTTTGTGC
ATATCAGCTGACATATAGGGGCTAAAGTACTGGATTAGCGCGCGATTGCG
TATCTTGGTATACAGAGTGGTTACATGGGGCGCAATGTACATGTCAACCA
GCAGGTTGTCCCTAATCTCATCCAGAAGCGTCAGACATGAGGCGTATTTA
CTTTCGTAGAACTTGAAAATAATATCCCTGAGTTGGGGCTCCAGTTCTAA
GAACAATTTAAAGGATGTAGAGGCGATGACCAGACGCTTAAGCTCCTGTC
GATCAAAGGTGGCCAGGGCGCAGAGGCCACCATAGACCGCCACATTGCTG
GTGGAGATCATTTCGGGAAAGTCGCAGTGATCGAAGTTAGCATTGAGGAA
ATGCTTAGCGGCCACCTTATATTTCTTTTGCTGCAGTTCCGCCAGACCAG
CAGCGCATTCAAGGCGAGTATGAACCTGGGCATTAGCCTCCTTGGAGCCC
TCGGCGAAGTCCGGGGTGCTTTCCGCCTTGGATATGTAGCTCATCACATG
GGCCCAATTCTGGAGATAAATTGACACCTTGATCACGTTAAGGCACATGT
TTTACACATGCTTGCCACTAGTGCAGTAGTCTCTGGC
BS08839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3889-PA | 1578 | CSN1b-RA | 658..1578 | 937..17 | 4555 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-RA | 1802 | CG3889-RA | 794..1715 | 937..16 | 4580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18903144..18904065 | 16..937 | 4580 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:50:59 has no hits.
BS08839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:37 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-PA | 658..1578 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:09 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3889-PA | 658..1578 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:06 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 794..1723 | 7..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:24 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 794..1723 | 7..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:24 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18903141..18904065 | 13..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:06 Download gff for
BS08839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18896241..18897165 | 13..937 | 99 | | Plus |
BS08839.5prime Sequence
943 bp (778 high quality bases) assembled on 2006-01-18
> BS08839.5prime
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTT
GAATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGC
CGCTAAGCATTTCCTCCATGCTAACTTCGATCACTGCGACTTT
BS08839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3889-PA | 1578 | CSN1b-RA | 1..927 | 17..943 | 4610 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-RA | 1802 | CG3889-RA | 137..1063 | 17..943 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18903796..18904691 | 943..48 | 4465 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:23:53 has no hits.
BS08839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:39 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:10 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3889-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:15 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 133..1063 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:31 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 133..1063 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:31 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18903796..18904689 | 50..943 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:15 Download gff for
BS08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18896896..18897789 | 50..943 | 99 | <- | Minus |
BS08839.complete Sequence
1610 bp (1610 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636292
> BS08839.complete
GAAGTTATCAGTCGACATGCCCGTGCTGCCGATGCCACCACTCATGCAGA
ACGCCGTGGAGCCGATGCAAGTGGACATCGCGCCGCCGAACGAGGACAAC
GAAAACAACGAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCT
CGAAGTGTACGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAA
TTTATGTGGCGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATG
GCCATTACTTACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCT
GCACAAGCGCTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAG
CAAATGCTGGCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCA
GCTGCTCCCCTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGG
ACAGGCTCAACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTT
GGGTAGACACCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGAC
TCAGACCTCAAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAG
GGGCCACGATGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCA
ATGCCCTGAAGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAG
CATGTGGTAAACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCA
GAATTGGGCCCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGG
ACTTCGCCGAGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTT
GAATGCGCTGCTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAGGTGGC
CGCTAAGCATTTCCTCAATGCTAACTTCGATCACTGCGACTTTCCCGAAA
TGATCTCCACCAGCAATGTGGCGGTCTATGGTGGCCTCTGCGCCCTGGCC
ACCTTTGATCGACAGGAGCTTAAGCGTCTGGTCATCGCCTCTACATCCTT
TAAATTGTTCTTAGAACTGGAGCCCCAACTCAGGGATATTATTTTCAAGT
TCTACGAAAGTAAATACGCCTCATGTCTGACGCTTCTGGATGAGATTAGG
GACAACCTGCTGGTTGACATGTACATTGCGCCCCATGTAACCACTCTGTA
TACCAAGATACGCAATCGCGCGCTAATCCAGTACTTTAGCCCCTATATGT
CAGCTGATATGCACAAAATGGCCATGGCATTTAACTCGTCGGTGGGCGAT
CTGGAGAACGAGGTGATGCAGTTGATATTAGACGGACAGATCCAGGCGCG
TATTGACTCCCACAATAAGATCCTGTTCGCCAAGGAGGCGGATCAAAGGA
ACAGCACCTTTGAGCGGGCTTTGATCATGGGCAAGCAGTACCAGCGTCAT
ACCCGCATGCTTGTTCTTCGTGCTGCAATGCTCAAGAGCCACATCCACGT
GAAGAGCATTTCCCGGGAGGGTGGAAGCAACCACGGCGCCGAACTTTGCG
TCTCCGCCGGATCCTCGACAACTGCTCAACTCGCCCGAATCTAGAAGCTT
TCTAGACCAT
BS08839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-RA | 1578 | CG3889-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-RA | 1802 | CG3889-RA | 137..1715 | 17..1595 | 7895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18903144..18904691 | 1595..48 | 7740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:19:43 has no hits.
BS08839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:56 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 1..1578 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:05 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 220..1810 | 9..1604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:44 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 137..1714 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:56 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 220..1810 | 9..1604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:10 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 137..1714 | 17..1594 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:10 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18903145..18904689 | 50..1594 | 100 | <- | Minus |
| 3L | 18904762..18904794 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:44 Download gff for
BS08839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18896245..18897789 | 50..1594 | 100 | <- | Minus |
| arm_3L | 18897862..18897894 | 17..49 | 100 | | Minus |
BS08839.pep Sequence
Translation from 16 to 1593
> BS08839.pep
MPVLPMPPLMQNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYAN
QYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS
DLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPA
VEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDL
ADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHV
MSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKHFL
NANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLE
LEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRN
RALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN
KILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKSISR
EGGSNHGAELCVSAGSSTTAQLARI*
BS08839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-PA | 525 | CG3889-PA | 1..525 | 1..525 | 2696 | 100 | Plus |
| CSN1a-PA | 364 | CG4697-PA | 5..346 | 39..403 | 642 | 38.4 | Plus |
| Rpn7-PA | 389 | CG5378-PA | 79..373 | 172..472 | 187 | 20.6 | Plus |
