Clone BS08840 Report

Search the DGRC for BS08840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptMtch-RA
Protein status:BS08840.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08840.3prime Sequence

892 bp (862 high quality bases) assembled on 2006-01-18

> BS08840.3prime
ATGGTCTAGAAAGCTTCTACTGGTAACGCGCCAGCTTAGGCAAGGGCGCG
AATGAGGTGGCTATTACTGGAGAACTGATGGATTGTGACCGCCAGAAAAG
GGAGCTGCCGCGCTTAAGCTCCCCGCGAACCTGCAAATCATTCCAACAGT
CTACCCAGTTCCTGTAGGCCGGCATAATTGGCGGTTGGGCAGCCATCAGG
CGTGAGCCACTTACCGCTGAGCAGGTGGACACCACTTGCAGTGGATACAG
TAAACTAGATACGGCAAACTGTGTGAATCCGGAATTGTATTGCCTGCCTA
ACTTGTCCTTGATGATATATTTGTTAAGGATGTAGATCGTGGAGCTGCTG
AGCACTAGGCAGGCCAAATCGCCCAGCAGCTTTGGCACAAGACCGGCGAA
AAATCCCGCTATTCCCTCAGACTTCCAAATCTCGGCCACGGAGCCCACAA
TAGAGGTGTACAAGGTCTCGCGGCCGACAAACTGCGCCATCATGCGCAAC
GAGATTACGTGAAAAGGATGCGAGGCCACGACTCCGCTCACCATCAAAAC
AATATCCCGCTTCAGACTTTTCTTGAACTGGACGTACAATTCCTCATCAC
TAAGCTGCGAGTCGTCCTTATTCTCCTCTGGCTGCTCCAGGCCCAGTTGA
TCGGCCACTCGGTCGCTTACCACCATGGCCACCAGAGAACCCACCAATTT
AGGAGCTAGACCGCGGTAGCAACCGTAGAAGCCGTCGATCCGCCGAATGT
GGCCAGCGTACTGAAAGATGTTCGGCAACTTCATGATCGGCTTGCCCAGT
ATCGACTTGCCGGGCAGAGGAGCGATTGGTTCGTAACCCAGCTGGATGAG
GGTTTTGGAATATTCGAACGGATGAAGGGCGGCGCTGACGCC

BS08840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6851-PB 951 Mtch-RB 76..951 892..17 4380 100 Minus
CG6851-PA 951 Mtch-RA 76..951 892..17 4380 100 Minus
CG6851-PC 951 Mtch-RC 76..951 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 209..1084 892..17 4380 100 Minus
Mtch-RF 1408 CG6851-RF 221..1096 892..17 4380 100 Minus
Mtch-RE 1386 CG6851-RE 199..1074 892..17 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185866 587..88 2500 100 Minus
3L 28110227 3L 185134..185304 757..587 855 100 Minus
3L 28110227 3L 184939..185074 892..757 680 100 Minus
3L 28110227 3L 185925..185998 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:27:27 has no hits.

BS08840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:40 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-PC 76..951 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:12 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6851-PC 76..951 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:44 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 199..1074 17..892 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:33 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 199..1074 17..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:33 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 184939..185074 757..892 100 -> Minus
3L 185135..185303 588..756 100 -> Minus
3L 185367..185864 90..587 100 -> Minus
3L 185926..185998 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:44 Download gff for BS08840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 185926..185998 17..89 100   Minus
arm_3L 184939..185074 757..892 100 -> Minus
arm_3L 185135..185303 588..756 100 -> Minus
arm_3L 185367..185864 90..587 100 -> Minus

BS08840.5prime Sequence

889 bp (793 high quality bases) assembled on 2006-01-18

> BS08840.5prime
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCCAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTC

BS08840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6851-PB 951 Mtch-RB 1..873 17..889 4340 99.8 Plus
CG6851-PA 951 Mtch-RA 1..873 17..889 4340 99.8 Plus
CG6851-PC 951 Mtch-RC 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 134..1006 17..889 4350 99.9 Plus
Mtch-RF 1408 CG6851-RF 146..1018 17..889 4350 99.9 Plus
Mtch-RE 1386 CG6851-RE 124..996 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185859 397..889 2450 99.8 Plus
3L 28110227 3L 184864..185074 17..227 1055 100 Plus
3L 28110227 3L 185134..185304 227..397 855 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:13:51 has no hits.

BS08840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:41 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-PC 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:14 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6851-PC 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:34 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 122..996 14..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:36 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 122..996 14..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:36 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 184862..185074 14..227 99 -> Plus
3L 185135..185303 228..396 100 -> Plus
3L 185367..185859 397..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:34 Download gff for BS08840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 184862..185074 14..227 99 -> Plus
arm_3L 185135..185303 228..396 100 -> Plus
arm_3L 185367..185859 397..889 99   Plus

BS08840.complete Sequence

983 bp (983 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636293

> BS08840.complete
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACA
ATCCATCAGTTCTCCAGTAATAGCCACCTCATTCGCGCCCTTGCCTAAGC
TGGCGCGTTACCAGTAGAAGCTTTCTAGACCAT

BS08840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 951 CG6851-PG 1..951 17..967 4755 100 Plus
Mtch-RF 951 CG6851-PF 1..951 17..967 4755 100 Plus
Mtch-RE 951 CG6851-PE 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 134..1084 17..967 4755 100 Plus
Mtch-RF 1408 CG6851-RF 146..1096 17..967 4755 100 Plus
Mtch-RE 1386 CG6851-RE 124..1074 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185866 397..896 2500 100 Plus
3L 28110227 3L 184864..185074 17..227 1055 100 Plus
3L 28110227 3L 185134..185304 227..397 855 100 Plus
3L 28110227 3L 185925..185998 894..967 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:18:32 has no hits.

BS08840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:57 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:06 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 120..1072 14..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:06 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 124..1074 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:57 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 120..1072 14..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:40 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 124..1074 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:40 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 184864..185074 17..227 100 -> Plus
3L 185135..185303 228..396 100 -> Plus
3L 185367..185864 397..894 100 -> Plus
3L 185926..185998 895..967 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:06 Download gff for BS08840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 184864..185074 17..227 100 -> Plus
arm_3L 185135..185303 228..396 100 -> Plus
arm_3L 185367..185864 397..894 100 -> Plus
arm_3L 185926..185998 895..967 100   Plus

BS08840.pep Sequence

Translation from 16 to 966

> BS08840.pep
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQ*

BS08840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-PG 316 CG6851-PG 1..316 1..316 1623 100 Plus
Mtch-PF 316 CG6851-PF 1..316 1..316 1623 100 Plus
Mtch-PE 316 CG6851-PE 1..316 1..316 1623 100 Plus
Mtch-PC 316 CG6851-PC 1..316 1..316 1623 100 Plus
Mtch-PA 316 CG6851-PA 1..316 1..316 1623 100 Plus