Clone Sequence Records
BS08840.3prime Sequence
892 bp (862 high quality bases) assembled on 2006-01-18
> BS08840.3prime
ATGGTCTAGAAAGCTTCTACTGGTAACGCGCCAGCTTAGGCAAGGGCGCG
AATGAGGTGGCTATTACTGGAGAACTGATGGATTGTGACCGCCAGAAAAG
GGAGCTGCCGCGCTTAAGCTCCCCGCGAACCTGCAAATCATTCCAACAGT
CTACCCAGTTCCTGTAGGCCGGCATAATTGGCGGTTGGGCAGCCATCAGG
CGTGAGCCACTTACCGCTGAGCAGGTGGACACCACTTGCAGTGGATACAG
TAAACTAGATACGGCAAACTGTGTGAATCCGGAATTGTATTGCCTGCCTA
ACTTGTCCTTGATGATATATTTGTTAAGGATGTAGATCGTGGAGCTGCTG
AGCACTAGGCAGGCCAAATCGCCCAGCAGCTTTGGCACAAGACCGGCGAA
AAATCCCGCTATTCCCTCAGACTTCCAAATCTCGGCCACGGAGCCCACAA
TAGAGGTGTACAAGGTCTCGCGGCCGACAAACTGCGCCATCATGCGCAAC
GAGATTACGTGAAAAGGATGCGAGGCCACGACTCCGCTCACCATCAAAAC
AATATCCCGCTTCAGACTTTTCTTGAACTGGACGTACAATTCCTCATCAC
TAAGCTGCGAGTCGTCCTTATTCTCCTCTGGCTGCTCCAGGCCCAGTTGA
TCGGCCACTCGGTCGCTTACCACCATGGCCACCAGAGAACCCACCAATTT
AGGAGCTAGACCGCGGTAGCAACCGTAGAAGCCGTCGATCCGCCGAATGT
GGCCAGCGTACTGAAAGATGTTCGGCAACTTCATGATCGGCTTGCCCAGT
ATCGACTTGCCGGGCAGAGGAGCGATTGGTTCGTAACCCAGCTGGATGAG
GGTTTTGGAATATTCGAACGGATGAAGGGCGGCGCTGACGCC
BS08840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6851-PB | 951 | Mtch-RB | 76..951 | 892..17 | 4380 | 100 | Minus |
CG6851-PA | 951 | Mtch-RA | 76..951 | 892..17 | 4380 | 100 | Minus |
CG6851-PC | 951 | Mtch-RC | 76..951 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 209..1084 | 892..17 | 4380 | 100 | Minus |
Mtch-RF | 1408 | CG6851-RF | 221..1096 | 892..17 | 4380 | 100 | Minus |
Mtch-RE | 1386 | CG6851-RE | 199..1074 | 892..17 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185866 | 587..88 | 2500 | 100 | Minus |
3L | 28110227 | 3L | 185134..185304 | 757..587 | 855 | 100 | Minus |
3L | 28110227 | 3L | 184939..185074 | 892..757 | 680 | 100 | Minus |
3L | 28110227 | 3L | 185925..185998 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:27:27 has no hits.
BS08840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:40 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-PC | 76..951 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:12 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6851-PC | 76..951 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:44 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 199..1074 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:33 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 199..1074 | 17..892 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:33 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184939..185074 | 757..892 | 100 | -> | Minus |
3L | 185135..185303 | 588..756 | 100 | -> | Minus |
3L | 185367..185864 | 90..587 | 100 | -> | Minus |
3L | 185926..185998 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:44 Download gff for
BS08840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 185926..185998 | 17..89 | 100 | | Minus |
arm_3L | 184939..185074 | 757..892 | 100 | -> | Minus |
arm_3L | 185135..185303 | 588..756 | 100 | -> | Minus |
arm_3L | 185367..185864 | 90..587 | 100 | -> | Minus |
BS08840.5prime Sequence
889 bp (793 high quality bases) assembled on 2006-01-18
> BS08840.5prime
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCCAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTC
BS08840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6851-PB | 951 | Mtch-RB | 1..873 | 17..889 | 4340 | 99.8 | Plus |
CG6851-PA | 951 | Mtch-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
CG6851-PC | 951 | Mtch-RC | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 134..1006 | 17..889 | 4350 | 99.9 | Plus |
Mtch-RF | 1408 | CG6851-RF | 146..1018 | 17..889 | 4350 | 99.9 | Plus |
Mtch-RE | 1386 | CG6851-RE | 124..996 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185859 | 397..889 | 2450 | 99.8 | Plus |
3L | 28110227 | 3L | 184864..185074 | 17..227 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 185134..185304 | 227..397 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:13:51 has no hits.
BS08840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:41 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-PC | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:14 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6851-PC | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:34 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 122..996 | 14..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:36 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 122..996 | 14..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:36 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184862..185074 | 14..227 | 99 | -> | Plus |
3L | 185135..185303 | 228..396 | 100 | -> | Plus |
3L | 185367..185859 | 397..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:34 Download gff for
BS08840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 184862..185074 | 14..227 | 99 | -> | Plus |
arm_3L | 185135..185303 | 228..396 | 100 | -> | Plus |
arm_3L | 185367..185859 | 397..889 | 99 | | Plus |
BS08840.complete Sequence
983 bp (983 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636293
> BS08840.complete
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACA
ATCCATCAGTTCTCCAGTAATAGCCACCTCATTCGCGCCCTTGCCTAAGC
TGGCGCGTTACCAGTAGAAGCTTTCTAGACCAT
BS08840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 951 | CG6851-PG | 1..951 | 17..967 | 4755 | 100 | Plus |
Mtch-RF | 951 | CG6851-PF | 1..951 | 17..967 | 4755 | 100 | Plus |
Mtch-RE | 951 | CG6851-PE | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 134..1084 | 17..967 | 4755 | 100 | Plus |
Mtch-RF | 1408 | CG6851-RF | 146..1096 | 17..967 | 4755 | 100 | Plus |
Mtch-RE | 1386 | CG6851-RE | 124..1074 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185866 | 397..896 | 2500 | 100 | Plus |
3L | 28110227 | 3L | 184864..185074 | 17..227 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 185134..185304 | 227..397 | 855 | 100 | Plus |
3L | 28110227 | 3L | 185925..185998 | 894..967 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:32 has no hits.
BS08840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:57 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:06 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 120..1072 | 14..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:06 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 124..1074 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:57 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 120..1072 | 14..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:40 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 124..1074 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:40 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184864..185074 | 17..227 | 100 | -> | Plus |
3L | 185135..185303 | 228..396 | 100 | -> | Plus |
3L | 185367..185864 | 397..894 | 100 | -> | Plus |
3L | 185926..185998 | 895..967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:06 Download gff for
BS08840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 184864..185074 | 17..227 | 100 | -> | Plus |
arm_3L | 185135..185303 | 228..396 | 100 | -> | Plus |
arm_3L | 185367..185864 | 397..894 | 100 | -> | Plus |
arm_3L | 185926..185998 | 895..967 | 100 | | Plus |
BS08840.pep Sequence
Translation from 16 to 966
> BS08840.pep
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQ*
BS08840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-PG | 316 | CG6851-PG | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PF | 316 | CG6851-PF | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PE | 316 | CG6851-PE | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PC | 316 | CG6851-PC | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PA | 316 | CG6851-PA | 1..316 | 1..316 | 1623 | 100 | Plus |