Clone Sequence Records
BS08842.3prime Sequence
959 bp (825 high quality bases) assembled on 2006-01-18
> BS08842.3prime
ATGGTCTAGAAAGCTTTTATAAGGCATCAGATATTGAGGTACCGAATCCA
AAGGTCTGTTTGATGCTATGCCAGTAATATCGGTACCAGTTTGTCTTCAT
CGCATCAAATTCGGACGCGGGTATCCCGGTCTGCTTGAGCGACATCATTG
TGCTGGATGAAGTTTCTTCCAGCTCTATGACAACGTTTGAGTAGTGACCA
GATGTCCAGTTTTTCAGACGCCAGCTCTGCTGTATTTTTTTTTCAGGGAC
GAGCTCTTCGAATTTTCCGAGCACATTGCCTCCGTAAAGAATAAATTCTC
CACCGCGCACGGCATCTACTTTGGCAGGTGCCCTCGTAAAGGCAGTGACC
ATTTCTGGCTTTGTGAGAGCGTTGTAAAGGTCATTGGCGCTGCAGTGAAA
TTCTTCGGTCATCGAGAGAGTGCGAACGTCCAGTTTACAGCCGATGCCAG
AGTTCTTCAGCCTAGGAGCCGCCACCGAGGAGTTTAAAGCGATATTTTGG
GCTGCATTACGGGTATTGTTGGCATCCTTAAAATTCGCCACAGTATTTCC
CGCTCCGGCCTCGTCGCCCTTCTTTGGTAGGATAAGGTTCTTGGAGTACT
CCTCCTTCAACTCTCGGATGTAGGAAGCCAGTTGCTGCCGCACGCGGTCT
CGTCCCACGTTGTACATGAACTGTTTCAGGGTCTCCGACTCGTCGTTGGA
CTCGTCGATTGTCACCGTGATCTCTACGTCGGCTAGTTCGTTCTCCTCGG
AGAGATTGGGAATGGTTAACTTGCCCTTGTGGATCAGCTTGCTGTTCTTT
AGGAGCTTTCCAGACCACTTGAGCACCAGCTCCCACTCGTAGAAAAATAT
GAGCTTGCCCTTGCGATTGTTCACGGTGGGCTCCCCGGAGCATTTGTCCA
CGGAGTCCACGGCACACTCAATGTCGCTTTGCCCCTATTTTGAATCCTGN
AAAAGCTGA
BS08842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PA | 1065 | CG1416-RA | 148..1065 | 934..17 | 4565 | 99.8 | Minus |
CG1416-PB | 1065 | CG1416-RB | 148..1065 | 934..17 | 4565 | 99.8 | Minus |
CG1416-PC | 1065 | CG1416-RC | 148..1065 | 934..17 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 223..1165 | 959..17 | 4644 | 99.6 | Minus |
CG1416-RB | 1500 | CG1416-RB | 266..1208 | 959..17 | 4644 | 99.6 | Minus |
CG1416-RA | 1644 | CG1416-RA | 325..1267 | 959..17 | 4644 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758441..21759078 | 934..297 | 3175 | 99.8 | Minus |
2L | 23513712 | 2L | 21760480..21760623 | 160..17 | 720 | 100 | Minus |
2L | 23513712 | 2L | 21759231..21759366 | 296..161 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:01:27 has no hits.
BS08842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:44 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PA | 124..1065 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:18 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PC | 124..1065 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:08 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 326..1270 | 14..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:38 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 326..1270 | 14..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:38 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758431..21759078 | 297..943 | 99 | -> | Minus |
2L | 21759231..21759366 | 161..296 | 100 | -> | Minus |
2L | 21760480..21760626 | 14..160 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:08 Download gff for
BS08842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758431..21759078 | 297..943 | 99 | -> | Minus |
arm_2L | 21759231..21759366 | 161..296 | 100 | -> | Minus |
arm_2L | 21760480..21760626 | 14..160 | 99 | | Minus |
BS08842.5prime Sequence
813 bp (741 high quality bases) assembled on 2006-01-18
> BS08842.5prime
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTA
BS08842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PA | 1065 | CG1416-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
CG1416-PB | 1065 | CG1416-RB | 1..797 | 17..813 | 3985 | 100 | Plus |
CG1416-PC | 1065 | CG1416-RC | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 101..897 | 17..813 | 3985 | 100 | Plus |
CG1416-RB | 1500 | CG1416-RB | 144..940 | 17..813 | 3985 | 100 | Plus |
CG1416-RA | 1644 | CG1416-RA | 203..999 | 17..813 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758440..21759078 | 163..801 | 3195 | 100 | Plus |
2L | 23513712 | 2L | 21758212..21758360 | 17..165 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:58:18 has no hits.
BS08842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:45 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:19 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PC | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:27 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 199..998 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:27 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 199..998 | 10..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:27 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758208..21758359 | 10..164 | 98 | -> | Plus |
2L | 21758442..21759078 | 165..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:27 Download gff for
BS08842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758208..21758359 | 10..164 | 98 | -> | Plus |
arm_2L | 21758442..21759078 | 165..801 | 100 | | Plus |
BS08842.complete Sequence
1097 bp (1097 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636294
> BS08842.complete
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGG
TCACTACTCAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAA
TGATGTCGCTCAAGCAGACCGGGATACCCGCGTCCGAATTTGATGCGATG
AAGACAAACTGGTACCGATATTACTGGCATAGCATCAAACAGACCTTTGG
ATTCGGTACCTCAATATCTGATGCCTTATAAAAGCTTTCTAGACCAT
BS08842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1065 | CG1416-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG1416-RB | 1065 | CG1416-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG1416-RA | 1065 | CG1416-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 101..1165 | 17..1081 | 5325 | 100 | Plus |
CG1416-RB | 1500 | CG1416-RB | 144..1208 | 17..1081 | 5325 | 100 | Plus |
CG1416-RA | 1644 | CG1416-RA | 203..1267 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758440..21759078 | 163..801 | 3195 | 100 | Plus |
2L | 23513712 | 2L | 21758212..21758360 | 17..165 | 745 | 100 | Plus |
2L | 23513712 | 2L | 21760480..21760623 | 938..1081 | 720 | 100 | Plus |
2L | 23513712 | 2L | 21759231..21759366 | 802..937 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:08 has no hits.
BS08842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:46 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:51 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 105..1176 | 10..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:42 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 203..1265 | 17..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:46 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 105..1176 | 10..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:36 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 203..1265 | 17..1079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:36 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758212..21758359 | 17..164 | 100 | -> | Plus |
2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
2L | 21759231..21759366 | 802..937 | 100 | -> | Plus |
2L | 21760480..21760621 | 938..1079 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:42 Download gff for
BS08842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758212..21758359 | 17..164 | 100 | -> | Plus |
arm_2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
arm_2L | 21759231..21759366 | 802..937 | 100 | -> | Plus |
arm_2L | 21760480..21760621 | 938..1079 | 100 | | Plus |
BS08842.pep Sequence
Translation from 16 to 1080
> BS08842.pep
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDAL*
BS08842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PA | 354 | CG1416-PA | 1..354 | 1..354 | 1870 | 100 | Plus |
CG1416-PC | 354 | CG1416-PC | 1..354 | 1..354 | 1870 | 100 | Plus |
CG1416-PB | 354 | CG1416-PB | 1..354 | 1..354 | 1870 | 100 | Plus |