Clone BS08842 Report

Search the DGRC for BS08842

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG1416-RA
Protein status:BS08842.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08842.3prime Sequence

959 bp (825 high quality bases) assembled on 2006-01-18

> BS08842.3prime
ATGGTCTAGAAAGCTTTTATAAGGCATCAGATATTGAGGTACCGAATCCA
AAGGTCTGTTTGATGCTATGCCAGTAATATCGGTACCAGTTTGTCTTCAT
CGCATCAAATTCGGACGCGGGTATCCCGGTCTGCTTGAGCGACATCATTG
TGCTGGATGAAGTTTCTTCCAGCTCTATGACAACGTTTGAGTAGTGACCA
GATGTCCAGTTTTTCAGACGCCAGCTCTGCTGTATTTTTTTTTCAGGGAC
GAGCTCTTCGAATTTTCCGAGCACATTGCCTCCGTAAAGAATAAATTCTC
CACCGCGCACGGCATCTACTTTGGCAGGTGCCCTCGTAAAGGCAGTGACC
ATTTCTGGCTTTGTGAGAGCGTTGTAAAGGTCATTGGCGCTGCAGTGAAA
TTCTTCGGTCATCGAGAGAGTGCGAACGTCCAGTTTACAGCCGATGCCAG
AGTTCTTCAGCCTAGGAGCCGCCACCGAGGAGTTTAAAGCGATATTTTGG
GCTGCATTACGGGTATTGTTGGCATCCTTAAAATTCGCCACAGTATTTCC
CGCTCCGGCCTCGTCGCCCTTCTTTGGTAGGATAAGGTTCTTGGAGTACT
CCTCCTTCAACTCTCGGATGTAGGAAGCCAGTTGCTGCCGCACGCGGTCT
CGTCCCACGTTGTACATGAACTGTTTCAGGGTCTCCGACTCGTCGTTGGA
CTCGTCGATTGTCACCGTGATCTCTACGTCGGCTAGTTCGTTCTCCTCGG
AGAGATTGGGAATGGTTAACTTGCCCTTGTGGATCAGCTTGCTGTTCTTT
AGGAGCTTTCCAGACCACTTGAGCACCAGCTCCCACTCGTAGAAAAATAT
GAGCTTGCCCTTGCGATTGTTCACGGTGGGCTCCCCGGAGCATTTGTCCA
CGGAGTCCACGGCACACTCAATGTCGCTTTGCCCCTATTTTGAATCCTGN
AAAAGCTGA

BS08842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PA 1065 CG1416-RA 148..1065 934..17 4565 99.8 Minus
CG1416-PB 1065 CG1416-RB 148..1065 934..17 4565 99.8 Minus
CG1416-PC 1065 CG1416-RC 148..1065 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 223..1165 959..17 4644 99.6 Minus
CG1416-RB 1500 CG1416-RB 266..1208 959..17 4644 99.6 Minus
CG1416-RA 1644 CG1416-RA 325..1267 959..17 4644 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758441..21759078 934..297 3175 99.8 Minus
2L 23513712 2L 21760480..21760623 160..17 720 100 Minus
2L 23513712 2L 21759231..21759366 296..161 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:01:27 has no hits.

BS08842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:44 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PA 124..1065 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:18 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PC 124..1065 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:08 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 326..1270 14..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:38 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 326..1270 14..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:38 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21758431..21759078 297..943 99 -> Minus
2L 21759231..21759366 161..296 100 -> Minus
2L 21760480..21760626 14..160 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:08 Download gff for BS08842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758431..21759078 297..943 99 -> Minus
arm_2L 21759231..21759366 161..296 100 -> Minus
arm_2L 21760480..21760626 14..160 99   Minus

BS08842.5prime Sequence

813 bp (741 high quality bases) assembled on 2006-01-18

> BS08842.5prime
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTA

BS08842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PA 1065 CG1416-RA 1..797 17..813 3985 100 Plus
CG1416-PB 1065 CG1416-RB 1..797 17..813 3985 100 Plus
CG1416-PC 1065 CG1416-RC 1..797 17..813 3985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 101..897 17..813 3985 100 Plus
CG1416-RB 1500 CG1416-RB 144..940 17..813 3985 100 Plus
CG1416-RA 1644 CG1416-RA 203..999 17..813 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 163..801 3195 100 Plus
2L 23513712 2L 21758212..21758360 17..165 745 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:58:18 has no hits.

BS08842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:45 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:19 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PC 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:27 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 199..998 10..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:27 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 199..998 10..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:27 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21758208..21758359 10..164 98 -> Plus
2L 21758442..21759078 165..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:27 Download gff for BS08842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758208..21758359 10..164 98 -> Plus
arm_2L 21758442..21759078 165..801 100   Plus

BS08842.complete Sequence

1097 bp (1097 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636294

> BS08842.complete
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGG
TCACTACTCAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAA
TGATGTCGCTCAAGCAGACCGGGATACCCGCGTCCGAATTTGATGCGATG
AAGACAAACTGGTACCGATATTACTGGCATAGCATCAAACAGACCTTTGG
ATTCGGTACCTCAATATCTGATGCCTTATAAAAGCTTTCTAGACCAT

BS08842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1065 CG1416-PC 1..1065 17..1081 5325 100 Plus
CG1416-RB 1065 CG1416-PB 1..1065 17..1081 5325 100 Plus
CG1416-RA 1065 CG1416-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 101..1165 17..1081 5325 100 Plus
CG1416-RB 1500 CG1416-RB 144..1208 17..1081 5325 100 Plus
CG1416-RA 1644 CG1416-RA 203..1267 17..1081 5325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 163..801 3195 100 Plus
2L 23513712 2L 21758212..21758360 17..165 745 100 Plus
2L 23513712 2L 21760480..21760623 938..1081 720 100 Plus
2L 23513712 2L 21759231..21759366 802..937 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:08 has no hits.

BS08842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:46 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:51 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 105..1176 10..1084 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:42 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 203..1265 17..1079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:46 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 105..1176 10..1084 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:36 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 203..1265 17..1079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:36 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758212..21758359 17..164 100 -> Plus
2L 21758442..21759078 165..801 100 -> Plus
2L 21759231..21759366 802..937 100 -> Plus
2L 21760480..21760621 938..1079 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:42 Download gff for BS08842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758212..21758359 17..164 100 -> Plus
arm_2L 21758442..21759078 165..801 100 -> Plus
arm_2L 21759231..21759366 802..937 100 -> Plus
arm_2L 21760480..21760621 938..1079 100   Plus

BS08842.pep Sequence

Translation from 16 to 1080

> BS08842.pep
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDAL*

BS08842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PA 354 CG1416-PA 1..354 1..354 1870 100 Plus
CG1416-PC 354 CG1416-PC 1..354 1..354 1870 100 Plus
CG1416-PB 354 CG1416-PB 1..354 1..354 1870 100 Plus