Clone Sequence Records
BS08844.3prime Sequence
918 bp (858 high quality bases) assembled on 2006-01-18
> BS08844.3prime
ATGGTCTAGAAAGCTTTTAAACGGACAACGATACGAAACTGTTGTATTGC
GTGATGTTGCGTTTGAGTATGTCGGCGCAGGGTCCCAACACGCGTTCAAA
TCTCGCCCGGTCCAGTTTGACGCATTTGAGCGGCCCACGAGCTACAACAG
TCGCTGCACGTGGTCGGTCCAAAAGCAGAGCAATCTCGCCAAAGTAATCG
CTGCTACCCAGACGGCCCACCTCGGCGGGATCCTCGCCCTCAGAACGCTG
CTGCAGCACCACCGCACAGCCCTCGAGGATGATGTAGAAGTCATCGCCAG
CTGCTCCCTGCTTGACAATCGTCTCACCGTCATCGAAGGAGCACGTCTCC
AGGGAATCGGCCACTGTGAGGCGCTCCCATTTGTCCAAGCTCTCCAGAAT
GGACACGCGCGATAAGAACTCCTCGTACATCTTGCGCTTGCGGATGGTCG
AGCCCATCAGAATGCGGCGGTAGGAGTCGCGGTCGATTCCCCACAGCTTC
ACATCGGTTTTGGCGCGCACGGTGGCGGCGCGAGGAGTGCCATAGATGAG
GGCCAGTTCACCAAAGCTGCCGCCCTCGCTGATGGTGGTCACTAGTTCGG
AGTTGACGAAAACATCGACCTCTCCCACATCAATCACGTAGAAGTTGTCG
CCTTCATCGCCCTGCTGGATGATATTCTCGCCGGCGATGTGATTCACAGG
GAACATGGCATCAAATATGTCGGATCTCTCGCTCTCGTCCAAGTGAGCGA
ACAGGACGTTCTTGGCAATCGCCTTGGACAGGGCATTCATCGTCTTGTAG
TCCTTGGGCACCACCTTCTTAACATAGTTGGTGGCATCCTCTTCGGTTAC
GGGTTCGGCGGAGATTCCGCCTCGCCTGCGAACCGGTGGAGCAGCTGTTT
GTGGCATCGGGCTGAGAT
BS08844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3263-PC | 1131 | Pka-R1-RC | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PA | 1131 | Pka-R1-RA | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PE | 960 | Pka-R1-RE | 59..960 | 918..17 | 4510 | 100 | Minus |
| CG3263-PD | 966 | Pka-R1-RD | 65..966 | 918..17 | 4510 | 100 | Minus |
| CG3263-PG | 1131 | Pka-R1-RG | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PH | 1131 | Pka-R1-RH | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PI | 1131 | Pka-R1-RI | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PJ | 1131 | Pka-R1-RJ | 230..1131 | 918..17 | 4510 | 100 | Minus |
| CG3263-PB | 891 | Pka-R1-RB | 1..891 | 907..17 | 4455 | 100 | Minus |
| CG3263-PF | 891 | Pka-R1-RF | 1..891 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 3570 | CG42341-RU | 707..1608 | 918..17 | 4510 | 100 | Minus |
| Pka-R1-RT | 3240 | CG42341-RT | 377..1278 | 918..17 | 4510 | 100 | Minus |
| Pka-R1-RS | 3068 | CG42341-RS | 205..1106 | 918..17 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20833283..20833658 | 613..238 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 20832901..20833207 | 918..612 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 20833731..20833869 | 240..102 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 20834000..20834086 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:59:45 has no hits.
BS08844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:48 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3263-PJ | 230..1131 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:24 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3263-PA | 230..1131 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:45 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RS | 205..1106 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:09 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RS | 205..1106 | 17..918 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:09 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20833283..20833657 | 239..613 | 100 | -> | Minus |
| 3L | 20833733..20833869 | 102..238 | 100 | -> | Minus |
| 3L | 20834002..20834086 | 17..101 | 100 | | Minus |
| 3L | 20832901..20833205 | 614..918 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:45 Download gff for
BS08844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20826001..20826305 | 614..918 | 100 | -> | Minus |
| arm_3L | 20826383..20826757 | 239..613 | 100 | -> | Minus |
| arm_3L | 20826833..20826969 | 102..238 | 100 | -> | Minus |
| arm_3L | 20827102..20827186 | 17..101 | 100 | | Minus |
BS08844.5prime Sequence
901 bp (799 high quality bases) assembled on 2006-01-18
> BS08844.5prime
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTC
AAGCAGGNAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
G
BS08844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3263-PC | 1131 | Pka-R1-RC | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PA | 1131 | Pka-R1-RA | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PG | 1131 | Pka-R1-RG | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PH | 1131 | Pka-R1-RH | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PI | 1131 | Pka-R1-RI | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PJ | 1131 | Pka-R1-RJ | 1..885 | 17..901 | 4406 | 99.8 | Plus |
| CG3263-PE | 960 | Pka-R1-RE | 3..714 | 190..901 | 3541 | 99.8 | Plus |
| CG3263-PD | 966 | Pka-R1-RD | 9..720 | 190..901 | 3541 | 99.8 | Plus |
| CG3263-PB | 891 | Pka-R1-RB | 1..645 | 257..901 | 3206 | 99.8 | Plus |
| CG3263-PF | 891 | Pka-R1-RF | 1..645 | 257..901 | 3206 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 3570 | CG42341-RU | 476..1362 | 15..901 | 4424 | 99.9 | Plus |
| Pka-R1-RT | 3240 | CG42341-RT | 146..1032 | 15..901 | 4424 | 99.9 | Plus |
| Pka-R1-RP | 3577 | CG42341-RP | 483..1369 | 15..901 | 4424 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20832845..20833207 | 190..552 | 1815 | 100 | Plus |
| 3L | 28110227 | 3L | 20833283..20833633 | 551..901 | 1744 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20816658..20816834 | 15..191 | 885 | 100 | Plus |
| U | 3151297 | U | 973046..973165 | 66..191 | 415 | 90.5 | Plus |
| Y | 3667352 | Y | 3286046..3286204 | 191..15 | 395 | 84.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:42:40 has no hits.
BS08844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:49 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3263-PI | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:25 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3263-PG | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:27:04 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 483..1369 | 15..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:05 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 483..1369 | 15..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:05 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20816658..20816833 | 15..190 | 100 | -> | Plus |
| 3L | 20832846..20833205 | 191..550 | 100 | -> | Plus |
| 3L | 20833283..20833633 | 551..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:27:04 Download gff for
BS08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20809758..20809933 | 15..190 | 100 | -> | Plus |
| arm_3L | 20825946..20826305 | 191..550 | 100 | -> | Plus |
| arm_3L | 20826383..20826733 | 551..901 | 99 | | Plus |
BS08844.complete Sequence
1163 bp (1163 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636295
> BS08844.complete
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTC
AAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
GGTGGTGCTGCAGCAGCGTTCTGAGGGCGAGGATCCCGCCGAGGTGGGCC
GTCTGGGTAGCAGCGATTACTTTGGCGAGATTGCTCTGCTTTTGGACCGA
CCACGTGCAGCGACTGTTGTAGCTCGTGGGCCGCTCAAATGCGTCAAACT
GGACCGGGCGAGATTTGAACGCGTGTTGGGACCCTGCGCCGACATACTCA
AACGCAACATCACGCAATACAACAGTTTCGTATCGTTGTCCGTTTAAAAG
CTTTCTAGACCAT
BS08844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 1131 | CG42341-PU | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| Pka-R1-RT | 1131 | CG42341-PT | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| Pka-R1-RP | 1131 | CG42341-PP | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 3570 | CG42341-RU | 476..1608 | 15..1147 | 5665 | 100 | Plus |
| Pka-R1-RT | 3240 | CG42341-RT | 146..1278 | 15..1147 | 5665 | 100 | Plus |
| Pka-R1-RP | 3577 | CG42341-RP | 483..1615 | 15..1147 | 5665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20833283..20833658 | 551..926 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 20832845..20833207 | 190..552 | 1815 | 100 | Plus |
| 3L | 28110227 | 3L | 20816658..20816834 | 15..191 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 20833731..20833869 | 924..1062 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 20834000..20834086 | 1061..1147 | 435 | 100 | Plus |
| U | 3151297 | U | 973046..973165 | 66..191 | 415 | 90.5 | Plus |
| Y | 3667352 | Y | 3365375..3365533 | 191..15 | 395 | 84.2 | Minus |
| Y | 3667352 | Y | 3286046..3286204 | 191..15 | 395 | 84.2 | Minus |
| Y | 3667352 | Y | 3290393..3290551 | 191..15 | 395 | 84.2 | Minus |
| Y | 3667352 | Y | 3294658..3294816 | 191..15 | 395 | 84.2 | Minus |
| Ymm | 880023 | Ymm | 578617..578730 | 15..140 | 325 | 85.7 | Plus |
| Ymm | 880023 | Ymm | 515332..515376 | 146..190 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:26:20 has no hits.
BS08844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:47 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RI | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:23 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RI | 161..1289 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:03 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 485..1613 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:47 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RI | 159..1291 | 15..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:15 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 485..1613 | 17..1145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:15 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20834002..20834084 | 1063..1145 | 100 | | Plus |
| 3L | 20816660..20816833 | 17..190 | 100 | -> | Plus |
| 3L | 20832846..20833205 | 191..550 | 100 | -> | Plus |
| 3L | 20833283..20833657 | 551..925 | 100 | -> | Plus |
| 3L | 20833733..20833869 | 926..1062 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:03 Download gff for
BS08844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20809760..20809933 | 17..190 | 100 | -> | Plus |
| arm_3L | 20825946..20826305 | 191..550 | 100 | -> | Plus |
| arm_3L | 20826383..20826757 | 551..925 | 100 | -> | Plus |
| arm_3L | 20826833..20826969 | 926..1062 | 100 | -> | Plus |
| arm_3L | 20827102..20827184 | 1063..1145 | 100 | | Plus |
BS08844.pep Sequence
Translation from 16 to 1146
> BS08844.pep
MSYMMAKTLEEQSLRECEHYIQTHGIQRVLKDCIVQLCVCRPENPVQFLR
QYFQKLEREQVKLDASRQVISPDDCEDLSPMPQTAAPPVRRRGGISAEPV
TEEDATNYVKKVVPKDYKTMNALSKAIAKNVLFAHLDESERSDIFDAMFP
VNHIAGENIIQQGDEGDNFYVIDVGEVDVFVNSELVTTISEGGSFGELAL
IYGTPRAATVRAKTDVKLWGIDRDSYRRILMGSTIRKRKMYEEFLSRVSI
LESLDKWERLTVADSLETCSFDDGETIVKQGAAGDDFYIILEGCAVVLQQ
RSEGEDPAEVGRLGSSDYFGEIALLLDRPRAATVVARGPLKCVKLDRARF
ERVLGPCADILKRNITQYNSFVSLSV*
BS08844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-PU | 376 | CG42341-PU | 1..376 | 1..376 | 1929 | 100 | Plus |
| Pka-R1-PT | 376 | CG42341-PT | 1..376 | 1..376 | 1929 | 100 | Plus |
| Pka-R1-PP | 376 | CG42341-PP | 1..376 | 1..376 | 1929 | 100 | Plus |
| Pka-R1-PM | 376 | CG42341-PM | 1..376 | 1..376 | 1929 | 100 | Plus |
| Pka-R1-PL | 376 | CG3263-PJ | 1..376 | 1..376 | 1929 | 100 | Plus |
