Clone Sequence Records
BS08847.3prime Sequence
952 bp (889 high quality bases) assembled on 2006-01-18
> BS08847.3prime
ATGGTCTAGAAAGCTTCTAAGAGTGCTCGGCCACCGCTCGAAGTTCATCC
ATGAGGGAGGGCATGGGCTCCACTCTCCTCCGTTCCCGACCAGCAATAAT
AATCCTGCTTAGCTCCTTCATATCAGACTGGCAGGCGGAAATACCCTCGC
CTAATTGGCACAAATTCGGTTGGCATCGCTGACTCCGCTCAATCAGATCG
AATATGAAGCTGTTGCGAGGGCGACATGTTTCATTGGCGGTTTGCTGAAC
GAGCTTCTTGTAGTCATCAATAAGATTAGCCACTTCATGGGCGGGTTCCT
GGGGCGTGTTGCTAGCCGTCGATTTGCCCGAGTCCGAGGCCTCAAACCGC
GCTCGCTCCATTACCAAAGTGTGCTCCAGACACTTAATTTTTGACAAAGC
TTGCTGATGCCTTCCGCTGATCTCCGCCAGCTTCATTTTAAGCCCAGGAA
GCTCTTCAGCCTTTCGATTGTTAACCCTCCCATTTCGCAGTTCCTTTCGA
AGAATTTTGGCCAACTGAGGCCAGCTTTTTATATGTGGTAGCCTCCTTCC
TGTTTCCATCTCAAGAACGTGACCAAGAGATCGCAAACACTCTACTGCTT
TGCGTTCTTCTCGCGCAATTTCCTCCTTCTCATCTAGCAAAGACTTTACC
TGGCCTTGCAGCCTTTGCATGTTAATCGACGCAGCGGAGTTTATCTTCAG
ATTCTCTTGGAATGTTTTCTTCAAAAGCTGTAACTCTAGTCGATTTTCCT
CGTCCTGCGCTTGGCTCAATTTCTGGAGCTTTTGCAGTTCATCATTTTGT
CCAGCGAACAATTCATTCAGGTGCTCCAATTCAACCGTCTTATGCTGTAG
TTCTGATCGCATTTCCTGCTCCAAGCTTTGAGTAGCTTGCAGAGCATCTA
ACAGTTGTTGCCAGTCTGCTTCCATTTCGGTAGTGCTCTTGATTTTAGCT
TC
BS08847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PB | 2493 | CG11248-RB | 1558..2493 | 952..17 | 4655 | 99.8 | Minus |
| CG11248-PA | 2493 | CG11248-RA | 1558..2493 | 952..17 | 4655 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 1748..2684 | 952..16 | 4670 | 99.9 | Minus |
| CG11248-RA | 2989 | CG11248-RA | 1739..2675 | 952..16 | 4670 | 99.9 | Minus |
| CG11248-RB | 2918 | CG11248-RB | 1668..2604 | 952..16 | 4670 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21681864..21682433 | 952..383 | 2835 | 99.8 | Minus |
| 3L | 28110227 | 3L | 21682678..21682917 | 255..16 | 1200 | 100 | Minus |
| 3L | 28110227 | 3L | 21682493..21682623 | 384..254 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:50:33 has no hits.
BS08847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:50 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PB | 1558..2493 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:27 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PA | 1558..2493 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:59 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 1668..2604 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:01 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 1668..2604 | 16..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:01 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21681864..21682433 | 383..952 | 99 | -> | Minus |
| 3L | 21682495..21682623 | 254..382 | 100 | -> | Minus |
| 3L | 21682680..21682917 | 16..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:59 Download gff for
BS08847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21674964..21675533 | 383..952 | 99 | -> | Minus |
| arm_3L | 21675595..21675723 | 254..382 | 100 | -> | Minus |
| arm_3L | 21675780..21676017 | 16..253 | 100 | | Minus |
BS08847.5prime Sequence
904 bp (750 high quality bases) assembled on 2006-01-18
> BS08847.5prime
GAAGTTATCAGTCGACATGGATTTGGACTGCGAGGGCGCTACAGCTTTGG
CTGACGACTCAGGGCACTTTAGCTGCACTAGCGATGATGGAGTAGGAGAT
CCTGCTCAGAAACCGGCGCCGCAGCCTGAACCGGACCAATCGATTTTTCT
GGTGCGGCAAGAGCTGCTTCGGACGCGCAGTGAGGTGCAAAGGCTCTTAA
AATCGGAGCAGTGGTACAAGCAGGAGCTTAAGTCCCAGAAGCACAGCAGG
CTACAGACGCTAGAACGATTGTACGCACAGGAACGGAAGTATTTGATGGA
GAACCAGAAGCTGCAGCAAGAATCGATCCGCCTGCACACACAATGCGCCA
CTCTGGAGAAGCAGCAGGAGCAGGGCTCACCATTTTCCCCTGGCTCATCG
CCGTTTAAAGCAGACTCGGAGTCACACGACTCCTCTTTTGAGGCCAAACA
GCAGGAGGCGCGCCTACGGGATCAGCGTCAGTTGATCGACGTGCTCCGAA
GGCAAAAGAAGATGCTTCTGGACGACATCCAGAGGATCAGTCTGGAACAC
GATGAAAAACTTTCGCAGTTGCAGCAAACTGTTGTCGGCATGGAGCTGGA
GAGCAAGCACGTGACTGGAAAATGCAAGCAACTACTTGACCTTAAAAGTC
AAATGGAGCACCAGCTAGAGCTAAGAAGCACTACCCTACGCAGTGTCACC
GCGGAGCGTGATCAGCTGCGCCAAGTCATTGCTGAGCTTAACGAGACGCT
GCAAACGCAGGAGCATCTGTTAGCGCTAAAGGAACAGGAGTTCCTGGATT
TGAAACAGTACTACCAACAAAAGCTGAAACGGGAGAGTAGCATGGAAATT
ATGCACTCTTATAGCATGGAATTTCACGAAGAGATCAACAGAAAAACGAG
TGAA
BS08847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PB | 2493 | CG11248-RB | 1..888 | 17..904 | 4415 | 99.8 | Plus |
| CG11248-PA | 2493 | CG11248-RA | 1..888 | 17..904 | 4415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 191..1078 | 17..904 | 4425 | 99.9 | Plus |
| CG11248-RA | 2989 | CG11248-RA | 182..1069 | 17..904 | 4425 | 99.9 | Plus |
| CG11248-RB | 2918 | CG11248-RB | 111..998 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21680307..21681194 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:35:13 has no hits.
BS08847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:51 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PB | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:29 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:06 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..998 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:02 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..998 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:02 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21680296..21681194 | 8..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:06 Download gff for
BS08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21673396..21674294 | 8..904 | 99 | | Plus |
BS08847.complete Sequence
2525 bp assembled on 2009-08-24
GenBank Submission: KX804610
> BS08847.complete
GAAGTTATCAGTCGACATGGATTTGGACTGCGAGGGCGCTACAGCTTTGG
CTGACGACTCAGGGCACTTTAGCTGCACTAGCGATGATGGAGTAGGAGAT
CCTGCTCAGAAACCGGCGCCGCAGCCTGAACCGGACCAATCGATTTTTCT
GGTGCGGCAAGAGCTGCTTCGGACGCGCAGTGAGGTGCAAAGGCTCTTAA
AATCGGAGCAGTGGTACAAGCAGGAGCTTAAGTCCCAGAAGCACAGCAGG
CTACAGACGCTAGAACGATTGTACGCACAGGAACGGAAGTATTTGATGGA
GAACCAGAAGCTGCAGCAAGAATCGATCCGCCTGCACACACAATGCGCCA
CTCTGGAGAAGCAGCAGGAGCAGGGCTCACCATTTTCCCCTGGCTCATCG
CCGTTTAAAGCAGACTCGGAGTCACACGACTCCTCTTTTGAGGCCAAACA
GCAGGAGGCGCGCCTACGGGATCAGCGTCAGTTGATCGACGTGCTCCGAA
GGCAAAAGAAGATGCTTCTGGACGACATCCAGAGGATCAGTCTGGAACAC
GATGAAAAACTTTCGCAGTTGCAGCAAACTGTTGTCGGCATGGAGCTGGA
GAGCAAGCACGTGACTGGAAAATGCAAGCAACTACTTGACCTTAAAAGTC
AAATGGAGCACCAGCTAGAGCTAAGAAGCACTACCCTACGCAGTGTCACC
GCGGAGCGTGATCAGCTGCGCCAAGTCATTGCTGAGCTTAACGAGACGCT
GCAAACGCAGGAGCATCTGTTAGCGCTAAAGGAACAGGAGTTCCTGGATT
TGAAACAGTACTACCAACAAAAGCTGAAACGGGAGAGTAGCATGGAAATT
ATGCACTCTTATAGCATGAAATTTCACGAAGAGATCAACAGAAAAACGAG
TGAAATTGCCAGCCTTAAGAATTCTCTTAACGAGCTTCAGGCCGAGCTGA
TGCTGATGTCTCACATGAAAGAGCAATGCGAGGAACAGCAGCGTCAGCTT
GAGCAACTGGAGTTCGCATTGCAGGCACAACTTTTGGAGGAGACTCAACT
TCGGCAAAGCAATGCTCTAAAACTGGAGCAGGTGGAAAATTTAACAATTT
CTTTGGCTTCGTTACAACTAGATAAGGAAGGCTTAAAAGAAAATTTAGGT
GAGGCGCAAAAGACCTTGAAAAATCTACAGCAGAAGGTGGACATTCTTCA
AAAACAGTATGCCGAAATGTGCTCCTTGTGTCAAAAGACTAAACAGCAAT
TGGAACTGGAGAAAATCGAGATTGCCAAAATGAAGCAAAACGGTTCCTTA
AAGGAAAGTGAGCTAATGGAGAAACTCAAAGATTATGCAGCGCAGTGTGA
TGAGCTGAGAAAAGCGTTGGCCGAAGCAGAGTCCCGTATCGATGTCCAAA
TCAAAAAGACAGAGGGCTGGCAAGTGCAGTTGAAACACAACCAAGCGACC
CAAACGGACCTCGAAGATCCGATTTTAGTTCAACGCATTGAGACTTTGGA
ACAACAACTAGCGGATGTCAGGAGCCAAAAATTGCACACAGTTTCGCTGC
TCCAAATACTGCTTCAACAGCAAGAAGCTAAAATCAAGAGCACTAACGAA
ATGGAAGCAGACTGGCAACAACTGTTAGATGCTCTGCAAGCTACTCAAAG
CTTGGAGCAGGAAATGCGATCAGAACTACAGCATAAGACGGTTGAATTGG
AGCACCTGAATGAATTGTTCGCTGGACAAAATGATGAACTGCAAAAGCTC
CAGAAATTGAGCCAAGCGCAGGACGAGGAAAATCGACTAGAGTTACAGCT
TTTGAAGAAAACATTCCAAGAGAATCTGAAGATAAACTCCGCTGCGTCGA
TTAACATGCAAAGGCTGCAAGGCCAGGTAAAGTCTTTGCTAGATGAGAAG
GAGGAAATTGCGCGAGAAGAACGCAAAGCAGTAGAGTGTTTGCGATCTCT
TGGTCACGTTCTTGAGATGGAAACAGGAAGGAGGCTACCACATATAAAAA
GCTGGCCTCAGTTGGCCAAAATTCTTCGAAAGGAACTGCGAAATGGGAGG
GTTAACAATCGAAAGGCTGAAGAGCTTCCTGGGCTTAAAATGAAGCTGGC
GGAGATCAGCGGAAGGCATCAGCAAGCTTTGTCAAAAATTAAGTGTCTGG
AGCACACTTTGGTAATGGAGCGAGCGCGGTTTGAGGCCTCGGACTCGGGC
AAATCGACGGCTAGCAACACGCCCCAGGAACCCGCCCATGAAGTGGCTAA
TCTTATTGATGACTACAAGAAGCTCGTTCAGCAAACCGCCAATGAAACAT
GTCGCCCTCGCAACAGCTTCATATTCGATCTGATTGAGCGGAGTCAGCGA
TGCCAACCGAATTTGTGCCAATTAGGCGAGGGTATTTCCGCCTGCCAGTC
TGATATGAAGGAGCTAAGCAGGATTATTATTGCTGGTCGGGAACGGAGGA
GAGTGGAGCCCATGCCCTCCCTCATGGATGAACTTCGAGCGGTGGCCGAG
CACTCTTAGAAGCTTTCTAGACCAT
BS08847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2493 | CG11248-PC | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| CG11248-RA | 2493 | CG11248-PA | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| CG11248-RB | 2493 | CG11248-PB | 1..2493 | 17..2509 | 12465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 191..2684 | 17..2510 | 12470 | 100 | Plus |
| CG11248-RA | 2989 | CG11248-RA | 182..2675 | 17..2510 | 12470 | 100 | Plus |
| CG11248-RB | 2918 | CG11248-RB | 111..2604 | 17..2510 | 12470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21680307..21682433 | 17..2143 | 10635 | 100 | Plus |
| 3L | 28110227 | 3L | 21682678..21682917 | 2271..2510 | 1200 | 100 | Plus |
| 3L | 28110227 | 3L | 21682493..21682623 | 2142..2272 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:27:24 has no hits.
BS08847.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:30 Download gff for
BS08847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RA | 128..2620 | 17..2509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:08 Download gff for
BS08847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..2603 | 17..2509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:59 Download gff for
BS08847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..2603 | 17..2509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:59 Download gff for
BS08847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21680307..21682433 | 17..2143 | 100 | -> | Plus |
| 3L | 21682495..21682623 | 2144..2272 | 100 | -> | Plus |
| 3L | 21682680..21682916 | 2273..2509 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:08 Download gff for
BS08847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21673407..21675533 | 17..2143 | 100 | -> | Plus |
| arm_3L | 21675595..21675723 | 2144..2272 | 100 | -> | Plus |
| arm_3L | 21675780..21676016 | 2273..2509 | 100 | | Plus |
BS08847.pep Sequence
Translation from 16 to 2508
> BS08847.pep
MDLDCEGATALADDSGHFSCTSDDGVGDPAQKPAPQPEPDQSIFLVRQEL
LRTRSEVQRLLKSEQWYKQELKSQKHSRLQTLERLYAQERKYLMENQKLQ
QESIRLHTQCATLEKQQEQGSPFSPGSSPFKADSESHDSSFEAKQQEARL
RDQRQLIDVLRRQKKMLLDDIQRISLEHDEKLSQLQQTVVGMELESKHVT
GKCKQLLDLKSQMEHQLELRSTTLRSVTAERDQLRQVIAELNETLQTQEH
LLALKEQEFLDLKQYYQQKLKRESSMEIMHSYSMKFHEEINRKTSEIASL
KNSLNELQAELMLMSHMKEQCEEQQRQLEQLEFALQAQLLEETQLRQSNA
LKLEQVENLTISLASLQLDKEGLKENLGEAQKTLKNLQQKVDILQKQYAE
MCSLCQKTKQQLELEKIEIAKMKQNGSLKESELMEKLKDYAAQCDELRKA
LAEAESRIDVQIKKTEGWQVQLKHNQATQTDLEDPILVQRIETLEQQLAD
VRSQKLHTVSLLQILLQQQEAKIKSTNEMEADWQQLLDALQATQSLEQEM
RSELQHKTVELEHLNELFAGQNDELQKLQKLSQAQDEENRLELQLLKKTF
QENLKINSAASINMQRLQGQVKSLLDEKEEIAREERKAVECLRSLGHVLE
METGRRLPHIKSWPQLAKILRKELRNGRVNNRKAEELPGLKMKLAEISGR
HQQALSKIKCLEHTLVMERARFEASDSGKSTASNTPQEPAHEVANLIDDY
KKLVQQTANETCRPRNSFIFDLIERSQRCQPNLCQLGEGISACQSDMKEL
SRIIIAGRERRRVEPMPSLMDELRAVAEHS*
BS08847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PC | 830 | CG11248-PC | 1..830 | 1..830 | 4153 | 100 | Plus |
| CG11248-PA | 830 | CG11248-PA | 1..830 | 1..830 | 4153 | 100 | Plus |
| CG11248-PB | 830 | CG11248-PB | 1..830 | 1..830 | 4153 | 100 | Plus |
| zip-PH | 1964 | CG15792-PH | 960..1775 | 56..786 | 306 | 21.7 | Plus |
| zip-PG | 1971 | CG15792-PG | 952..1767 | 56..786 | 306 | 21.7 | Plus |
| zip-PH | 1964 | CG15792-PH | 850..1510 | 50..713 | 226 | 20.8 | Plus |
| zip-PH | 1964 | CG15792-PH | 1106..1873 | 23..756 | 205 | 21 | Plus |
