Clone Sequence Records
BS08848.3prime Sequence
930 bp (853 high quality bases) assembled on 2006-01-18
> BS08848.3prime
ATGGTCTAGAAAGCTTCTACTGCTCCAGCCAGGATCCAGTGACGGCATTG
GGTGACTTAAGCTTTATGTTGAACTGCTTCAGAGTGCTCTCCAGTGCCAT
GGCATTGCCCGAGAAGTAGGCAGCGATGGCATTGTGCAGCAGAATCAATT
GCTTGTGCATCACTTTAATGCGATTCTCGTCGAGAAATTGCATTTTGACG
GCCACGTCCGAGCGCAGCTTCTCATATTGCTCCTTGTGCTGCGCATAGCT
GCGCTGGGTCTCCTCAAGAGCGACGGCCGAGGGCGTCAGCTCCGGCTTGG
TGTTCTCCAAATCCATGCGGTAGGCATCGAATTCGATTCTGGCCGTTTCG
TACTGTCGTATCGTCAGCAGCGTATCGTCGATCGTCTTGTTGCACAGTGT
GTTCACCGACGAAATAAAGAAGTTGAGCGCATTAAGCAGCAGCTCGCCGT
TCTTGGTGAGATTGCGCTGCGTCTCCGAATTGCACGTGAACTCTTTCTGC
AGCTCGGGGTTCTTCTGGGCCAGATCGGCGAAGGAGTCGGCCAGGGCGTG
CTGTGTGACGACCACGTGCTGGAAGTGCGAACTAAAGGCCCGCGTTAGCC
TCAAGATGGACAGATACTTGCGCTGCGTCTCGCGCAACTGCTCTATCTGG
GCCTCCAGTTCCGAGTCCACGGTCCGCTGCGACTTGCCCAACTTCTCCAG
CATTATCTGTCGCGTACACTTGTACGTCGATATACTCCAGTTCTTGAGAC
TGTCGATCTTGGAGGCGCTAGTGCGTATAATGCTGCCGCTCCCGCTGTCC
GTGGGGCTCAGGATGCCGTTACCGGATGGTGGACTACTGGGCGACATGGG
TGTGGTGGGTGCTGGATGGTTTCTTAGTGGCAGGCTGCTGGGGGCGCAAA
AGGGGGCGCCGACACCAACTCCAACGTTGC
BS08848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17184-PB | 1068 | CG17184-RB | 155..1068 | 930..17 | 4495 | 99.6 | Minus |
CG17184-PA | 1068 | CG17184-RA | 155..1068 | 930..17 | 4495 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 438..1352 | 930..16 | 4530 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 339..864 | 2630 | 100 | Plus |
3R | 32079331 | 3R | 11233402..11233572 | 170..340 | 855 | 100 | Plus |
3R | 32079331 | 3R | 11233217..11233324 | 62..169 | 540 | 100 | Plus |
3R | 32079331 | 3R | 11234508..11234576 | 862..930 | 300 | 95.7 | Plus |
3R | 32079331 | 3R | 11233081..11233128 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:04:06 has no hits.
BS08848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:53 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 155..1068 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:31 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 155..1068 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:01 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 438..1352 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:07 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 438..1352 | 16..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:07 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11233081..11233126 | 16..61 | 100 | <- | Plus |
3R | 11233217..11233324 | 62..169 | 100 | <- | Plus |
3R | 11233402..11233570 | 170..338 | 100 | <- | Plus |
3R | 11233922..11234444 | 339..861 | 100 | <- | Plus |
3R | 11234508..11234576 | 862..930 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:01 Download gff for
BS08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7058803..7058848 | 16..61 | 100 | <- | Plus |
arm_3R | 7058939..7059046 | 62..169 | 100 | <- | Plus |
arm_3R | 7059124..7059292 | 170..338 | 100 | <- | Plus |
arm_3R | 7059644..7060166 | 339..861 | 100 | <- | Plus |
arm_3R | 7060230..7060298 | 862..930 | 95 | | Plus |
BS08848.5prime Sequence
923 bp (849 high quality bases) assembled on 2006-01-18
> BS08848.5prime
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACG
BS08848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17184-PB | 1068 | CG17184-RB | 1..907 | 17..923 | 4535 | 100 | Plus |
CG17184-PA | 1068 | CG17184-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 284..1190 | 17..923 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 762..237 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 11234508..11234730 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 11233410..11233572 | 923..761 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:47:38 has no hits.
BS08848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:54 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:32 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:06 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 277..1190 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:29 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 277..1190 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:29 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11233410..11233570 | 763..923 | 100 | <- | Minus |
3R | 11233922..11234444 | 240..762 | 100 | <- | Minus |
3R | 11234508..11234737 | 9..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:06 Download gff for
BS08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7059132..7059292 | 763..923 | 100 | <- | Minus |
arm_3R | 7059644..7060166 | 240..762 | 100 | <- | Minus |
arm_3R | 7060230..7060459 | 9..239 | 98 | | Minus |
BS08848.complete Sequence
1100 bp (1100 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636296
> BS08848.complete
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACGAGAATCGCATTAAAGTGATGCACAAGC
AATTGATTCTGCTGCACAATGCCATCGCTGCCTACTTCTCGGGCAATGCC
ATGGCACTGGAGAGCACTCTGAAGCAGTTCAACATAAAGCTTAAGTCACC
CAATGCCGTCACTGGATCCTGGCTGGAGCAGTAGAAGCTTTCTAGACCAT
BS08848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 1068 | CG17184-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 284..1352 | 17..1085 | 5345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 762..237 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 11234508..11234730 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 11233402..11233572 | 931..761 | 855 | 100 | Minus |
3R | 32079331 | 3R | 11233217..11233324 | 1039..932 | 540 | 100 | Minus |
3R | 32079331 | 3R | 11233081..11233128 | 1085..1038 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:05:20 has no hits.
BS08848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:49 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:54 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 292..1367 | 9..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:51 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 284..1351 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:49 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 292..1367 | 9..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:42 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 284..1351 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:42 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11233082..11233126 | 1040..1084 | 100 | <- | Minus |
3R | 11233217..11233324 | 932..1039 | 100 | <- | Minus |
3R | 11233402..11233570 | 763..931 | 100 | <- | Minus |
3R | 11233922..11234444 | 240..762 | 100 | <- | Minus |
3R | 11234508..11234730 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:51 Download gff for
BS08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7060230..7060452 | 17..239 | 100 | | Minus |
arm_3R | 7058804..7058848 | 1040..1084 | 100 | <- | Minus |
arm_3R | 7058939..7059046 | 932..1039 | 100 | <- | Minus |
arm_3R | 7059124..7059292 | 763..931 | 100 | <- | Minus |
arm_3R | 7059644..7060166 | 240..762 | 100 | <- | Minus |
BS08848.pep Sequence
Translation from 16 to 1083
> BS08848.pep
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQ*
BS08848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-PA | 355 | CG17184-PA | 1..355 | 1..355 | 1809 | 100 | Plus |