Clone BS08848 Report

Search the DGRC for BS08848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptArfip-RA
Protein status:BS08848.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08848.3prime Sequence

930 bp (853 high quality bases) assembled on 2006-01-18

> BS08848.3prime
ATGGTCTAGAAAGCTTCTACTGCTCCAGCCAGGATCCAGTGACGGCATTG
GGTGACTTAAGCTTTATGTTGAACTGCTTCAGAGTGCTCTCCAGTGCCAT
GGCATTGCCCGAGAAGTAGGCAGCGATGGCATTGTGCAGCAGAATCAATT
GCTTGTGCATCACTTTAATGCGATTCTCGTCGAGAAATTGCATTTTGACG
GCCACGTCCGAGCGCAGCTTCTCATATTGCTCCTTGTGCTGCGCATAGCT
GCGCTGGGTCTCCTCAAGAGCGACGGCCGAGGGCGTCAGCTCCGGCTTGG
TGTTCTCCAAATCCATGCGGTAGGCATCGAATTCGATTCTGGCCGTTTCG
TACTGTCGTATCGTCAGCAGCGTATCGTCGATCGTCTTGTTGCACAGTGT
GTTCACCGACGAAATAAAGAAGTTGAGCGCATTAAGCAGCAGCTCGCCGT
TCTTGGTGAGATTGCGCTGCGTCTCCGAATTGCACGTGAACTCTTTCTGC
AGCTCGGGGTTCTTCTGGGCCAGATCGGCGAAGGAGTCGGCCAGGGCGTG
CTGTGTGACGACCACGTGCTGGAAGTGCGAACTAAAGGCCCGCGTTAGCC
TCAAGATGGACAGATACTTGCGCTGCGTCTCGCGCAACTGCTCTATCTGG
GCCTCCAGTTCCGAGTCCACGGTCCGCTGCGACTTGCCCAACTTCTCCAG
CATTATCTGTCGCGTACACTTGTACGTCGATATACTCCAGTTCTTGAGAC
TGTCGATCTTGGAGGCGCTAGTGCGTATAATGCTGCCGCTCCCGCTGTCC
GTGGGGCTCAGGATGCCGTTACCGGATGGTGGACTACTGGGCGACATGGG
TGTGGTGGGTGCTGGATGGTTTCTTAGTGGCAGGCTGCTGGGGGCGCAAA
AGGGGGCGCCGACACCAACTCCAACGTTGC

BS08848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17184-PB 1068 CG17184-RB 155..1068 930..17 4495 99.6 Minus
CG17184-PA 1068 CG17184-RA 155..1068 930..17 4495 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 438..1352 930..16 4530 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 339..864 2630 100 Plus
3R 32079331 3R 11233402..11233572 170..340 855 100 Plus
3R 32079331 3R 11233217..11233324 62..169 540 100 Plus
3R 32079331 3R 11234508..11234576 862..930 300 95.7 Plus
3R 32079331 3R 11233081..11233128 16..63 240 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:04:06 has no hits.

BS08848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:53 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 155..1068 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:31 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 155..1068 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:01 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 438..1352 16..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:07 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 438..1352 16..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:07 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11233081..11233126 16..61 100 <- Plus
3R 11233217..11233324 62..169 100 <- Plus
3R 11233402..11233570 170..338 100 <- Plus
3R 11233922..11234444 339..861 100 <- Plus
3R 11234508..11234576 862..930 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:01 Download gff for BS08848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7058803..7058848 16..61 100 <- Plus
arm_3R 7058939..7059046 62..169 100 <- Plus
arm_3R 7059124..7059292 170..338 100 <- Plus
arm_3R 7059644..7060166 339..861 100 <- Plus
arm_3R 7060230..7060298 862..930 95   Plus

BS08848.5prime Sequence

923 bp (849 high quality bases) assembled on 2006-01-18

> BS08848.5prime
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACG

BS08848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17184-PB 1068 CG17184-RB 1..907 17..923 4535 100 Plus
CG17184-PA 1068 CG17184-RA 1..907 17..923 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 284..1190 17..923 4535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 762..237 2630 100 Minus
3R 32079331 3R 11234508..11234730 239..17 1115 100 Minus
3R 32079331 3R 11233410..11233572 923..761 815 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:47:38 has no hits.

BS08848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:54 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:32 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:06 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 277..1190 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:29 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 277..1190 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:29 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11233410..11233570 763..923 100 <- Minus
3R 11233922..11234444 240..762 100 <- Minus
3R 11234508..11234737 9..239 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:06 Download gff for BS08848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7059132..7059292 763..923 100 <- Minus
arm_3R 7059644..7060166 240..762 100 <- Minus
arm_3R 7060230..7060459 9..239 98   Minus

BS08848.complete Sequence

1100 bp (1100 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636296

> BS08848.complete
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACGAGAATCGCATTAAAGTGATGCACAAGC
AATTGATTCTGCTGCACAATGCCATCGCTGCCTACTTCTCGGGCAATGCC
ATGGCACTGGAGAGCACTCTGAAGCAGTTCAACATAAAGCTTAAGTCACC
CAATGCCGTCACTGGATCCTGGCTGGAGCAGTAGAAGCTTTCTAGACCAT

BS08848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 1068 CG17184-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 284..1352 17..1085 5345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 762..237 2630 100 Minus
3R 32079331 3R 11234508..11234730 239..17 1115 100 Minus
3R 32079331 3R 11233402..11233572 931..761 855 100 Minus
3R 32079331 3R 11233217..11233324 1039..932 540 100 Minus
3R 32079331 3R 11233081..11233128 1085..1038 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:05:20 has no hits.

BS08848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:49 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:54 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 292..1367 9..1085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:51 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 284..1351 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:49 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 292..1367 9..1085 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:42 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 284..1351 17..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:42 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11233082..11233126 1040..1084 100 <- Minus
3R 11233217..11233324 932..1039 100 <- Minus
3R 11233402..11233570 763..931 100 <- Minus
3R 11233922..11234444 240..762 100 <- Minus
3R 11234508..11234730 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:51 Download gff for BS08848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7060230..7060452 17..239 100   Minus
arm_3R 7058804..7058848 1040..1084 100 <- Minus
arm_3R 7058939..7059046 932..1039 100 <- Minus
arm_3R 7059124..7059292 763..931 100 <- Minus
arm_3R 7059644..7060166 240..762 100 <- Minus

BS08848.pep Sequence

Translation from 16 to 1083

> BS08848.pep
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQ*

BS08848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-PA 355 CG17184-PA 1..355 1..355 1809 100 Plus