Clone Sequence Records
BS08849.3prime Sequence
925 bp (802 high quality bases) assembled on 2006-01-18
> BS08849.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTGCCGCGCTTGACCGCCTTGTAG
GAGCTGGCCGCTTCGTCCTCCGTGTGAAAATGTTTTACGGCACGTTGTTG
GCGCCTCGGATTGGCGGCATAGGGATGTGGATGTATGCTGTTCTGCGGTG
CCGTTGGCGCACTGGAATAATGGCGGCCCGCGGAGGAGCGAACCGGTTGC
TGCTCCTGGATTACACAGTCATCATCATCGTCGTCGTCGTCCTCCACTGG
CTCAATGGTCAACGTCGAGGTGTGTGCCGCTGGACGGGCGGGCATGATGG
CCTGCATGCCACCAGCATGATGTCTTGACTGCACCGCTCCGCGACTAGCG
CGCGATGTAAACTCCCTGTCAAACTGCTCGGCTTCTCCCTCCTCCAGATT
AATGAACTCCTGGCGCTCCTCCAGTTGTCCTGAGCGCATGTCCTGCTCTT
TCTCAATAATGTGTGCCCGCTCGCCGATGTGATGACCAATGGCCATCTTC
TTCACCCCAGTGCGCGAGTCCTGCACCGTCCTGCGGGTCTCACGAACGCC
TCCCGGTCCTGTTTTGGTACTAGTGCTGGCCTGGTAGATCTGAGGACGCC
CATCGGGACCCGATGACATGGTCATCACGGTGCTCTGGCAGAAGGATGCG
CCTGAATTGCCACCAATATCAGCGTTCAACAGGCGATTAAAGTTTGGCAT
CATGGGCATGCCGAAGAGGCCCATGGCTGGCATGGCCGGCATCTGCGGAC
GCTCCATGAGAGCGTTCTGCTGGAATCCCTGGTCAAAGGGCGAGACCTGC
ATGAAGGGATCGGGCATAAAGCTGTTCATCAGGCGATTCATCGAGCGCAT
CTGCATGTTCATCGCGTTCATAGTGTGGTTCATGTGGTTGTTCATAAGGC
CGAGATCGTCGTCGAAATCACCCAT
BS08849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8295-PA | 930 | Mlf-RA | 22..930 | 925..17 | 4545 | 100 | Minus |
CG8295-PD | 1131 | Mlf-RD | 22..809 | 925..138 | 3940 | 100 | Minus |
CG8295-PB | 822 | Mlf-RB | 22..809 | 925..138 | 3940 | 100 | Minus |
CG8295-PC | 1125 | Mlf-RC | 50..803 | 891..138 | 3770 | 100 | Minus |
CG8295-PD | 1131 | Mlf-RD | 1009..1131 | 139..17 | 615 | 100 | Minus |
CG8295-PC | 1125 | Mlf-RC | 1003..1125 | 139..17 | 615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-RA | 1599 | CG8295-RA | 124..1032 | 925..17 | 4545 | 100 | Minus |
Mlf-RG | 1501 | CG8295-RG | 61..934 | 890..17 | 4370 | 100 | Minus |
Mlf-RF | 1387 | CG8295-RF | 141..1018 | 891..17 | 4335 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15938447..15938979 | 138..670 | 2665 | 100 | Plus |
2R | 25286936 | 2R | 15939037..15939257 | 670..890 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 15936460..15936583 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 241..215 | 117 | 92.6 | Minus |
BS08849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:55 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-PA | 22..930 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:33 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8295-PA | 22..930 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:43 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 124..1035 | 14..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:37 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 124..1035 | 14..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:37 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15936457..15936580 | 14..137 | 99 | <- | Plus |
2R | 15938447..15938978 | 138..669 | 100 | <- | Plus |
2R | 15939037..15939257 | 670..890 | 100 | <- | Plus |
2R | 15939910..15939944 | 891..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:43 Download gff for
BS08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11823962..11824085 | 14..137 | 99 | <- | Plus |
arm_2R | 11825952..11826483 | 138..669 | 100 | <- | Plus |
arm_2R | 11826542..11826762 | 670..890 | 100 | <- | Plus |
arm_2R | 11827415..11827449 | 891..925 | 100 | | Plus |
BS08849.5prime Sequence
914 bp (852 high quality bases) assembled on 2006-01-18
> BS08849.5prime
GAAGTTATCAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCG
ACGACGATCTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCG
ATGAACATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCC
CGATCCCTTCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACG
CTCTCATGGAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTC
GGCATGCCCATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGG
TGGCAATTCAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCAT
CGGGTCCCGATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAA
ACAGGACCGGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCG
CACTGGGGTGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCAC
ACATTATTGAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGC
CAGGAGTTCATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGA
GTTTACATCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTG
GTGGCATGCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACG
TTGACCATTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGT
AATCCAGGAGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCA
GTGCGCCAACGGCACCGCAGAACAGCATACATCCACATCCCTATGCCGCC
AATCCGAAGCGCCAACAACGTGCCGTAAAACATTTTCACACGGAGGACGA
AGCGGCCAGCTCCT
BS08849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8295-PA | 930 | Mlf-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
CG8295-PD | 1131 | Mlf-RD | 1..809 | 17..825 | 4045 | 100 | Plus |
CG8295-PB | 822 | Mlf-RB | 1..809 | 17..825 | 4045 | 100 | Plus |
CG8295-PC | 1125 | Mlf-RC | 50..803 | 72..825 | 3770 | 100 | Plus |
CG8295-PD | 1131 | Mlf-RD | 1009..1099 | 824..914 | 430 | 98.9 | Plus |
CG8295-PC | 1125 | Mlf-RC | 1003..1093 | 824..914 | 430 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-RA | 1599 | CG8295-RA | 103..1000 | 17..914 | 4475 | 99.9 | Plus |
Mlf-RG | 1501 | CG8295-RG | 61..902 | 73..914 | 4195 | 99.9 | Plus |
Mlf-RF | 1387 | CG8295-RF | 141..986 | 72..914 | 4160 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15938447..15938979 | 825..293 | 2665 | 100 | Minus |
2R | 25286936 | 2R | 15939037..15939257 | 293..73 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15936492..15936583 | 914..823 | 445 | 98.9 | Minus |
2R | 25286936 | 2R | 15939910..15939965 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 13:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 722..748 | 117 | 92.6 | Plus |
BS08849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:56 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:35 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8295-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:43 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 103..1000 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:54 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 103..1000 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:54 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15936492..15936580 | 826..914 | 98 | <- | Minus |
2R | 15938447..15938978 | 294..825 | 100 | <- | Minus |
2R | 15939037..15939257 | 73..293 | 100 | <- | Minus |
2R | 15939910..15939965 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:43 Download gff for
BS08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11823997..11824085 | 826..914 | 98 | <- | Minus |
arm_2R | 11825952..11826483 | 294..825 | 100 | <- | Minus |
arm_2R | 11826542..11826762 | 73..293 | 100 | <- | Minus |
arm_2R | 11827415..11827470 | 17..72 | 100 | | Minus |
BS08849.complete Sequence
962 bp (962 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636297
> BS08849.complete
GAAGTTATCAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCG
ACGACGATCTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCG
ATGAACATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCC
CGATCCCTTCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACG
CTCTCATGGAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTC
GGCATGCCCATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGG
TGGCAATTCAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCAT
CGGGTCCCGATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAA
ACAGGACCGGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCG
CACTGGGGTGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCAC
ACATTATTGAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGC
CAGGAGTTCATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGA
GTTTACATCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTG
GTGGCATGCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACG
TTGACCATTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGT
AATCCAGGAGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCA
GTGCGCCAACGGCACCGCAGAACAGCATACATCCACATCCCTATGCCGCC
AATCCGAGGCGCCAACAACGTGCCGTAAAACATTTTCACACGGAGGACGA
AGCGGCCAGCTCCTACAAGGCGGTCAAGCGCGGCAAGAAGAAGTAGAAGC
TTTCTAGACCAT
BS08849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-RA | 930 | CG8295-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Mlf-RG | 867 | CG8295-PG | 1..867 | 80..946 | 4335 | 100 | Plus |
Mlf-RF | 927 | CG8295-PF | 50..927 | 72..946 | 4310 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-RA | 1599 | CG8295-RA | 103..1032 | 17..946 | 4650 | 100 | Plus |
Mlf-RG | 1501 | CG8295-RG | 61..934 | 73..946 | 4370 | 100 | Plus |
Mlf-RF | 1387 | CG8295-RF | 141..1018 | 72..946 | 4310 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15938447..15938979 | 825..293 | 2665 | 100 | Minus |
2R | 25286936 | 2R | 15939037..15939257 | 293..73 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15936460..15936583 | 946..823 | 620 | 100 | Minus |
2R | 25286936 | 2R | 15939910..15939965 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 722..748 | 117 | 92.6 | Plus |
BS08849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:31 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:38 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 109..1041 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:58 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 103..1032 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:31 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 109..1041 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:56 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlf-RA | 103..1032 | 17..946 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:56 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15936460..15936580 | 826..946 | 100 | <- | Minus |
2R | 15938447..15938978 | 294..825 | 100 | <- | Minus |
2R | 15939037..15939257 | 73..293 | 100 | <- | Minus |
2R | 15939910..15939965 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:58 Download gff for
BS08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11823965..11824085 | 826..946 | 100 | <- | Minus |
arm_2R | 11825952..11826483 | 294..825 | 100 | <- | Minus |
arm_2R | 11826542..11826762 | 73..293 | 100 | <- | Minus |
arm_2R | 11827415..11827470 | 17..72 | 100 | | Minus |
BS08849.pep Sequence
Translation from 16 to 945
> BS08849.pep
MSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMRSMNRLMNSFMPDPFMQ
VSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMPNFNRLLNADIGGNSGA
SFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKK
MAIGHHIGERAHIIEKEQDMRSGQLEERQEFINLEEGEAEQFDREFTSRA
SRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQ
PVRSSAGRHYSSAPTAPQNSIHPHPYAANPRRQQRAVKHFHTEDEAASSY
KAVKRGKKK*
BS08849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlf-PA | 309 | CG8295-PA | 1..309 | 1..309 | 1627 | 100 | Plus |
Mlf-PF | 308 | CG8295-PF | 16..308 | 18..309 | 1519 | 99 | Plus |
Mlf-PG | 288 | CG8295-PG | 1..288 | 22..309 | 1514 | 100 | Plus |
Mlf-PH | 349 | CG8295-PH | 1..270 | 1..270 | 1417 | 100 | Plus |
Mlf-PB | 273 | CG8295-PB | 1..269 | 1..269 | 1413 | 100 | Plus |