Clone BS08849 Report

Search the DGRC for BS08849

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptMlf-RA
Protein status:BS08849.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08849.3prime Sequence

925 bp (802 high quality bases) assembled on 2006-01-18

> BS08849.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTGCCGCGCTTGACCGCCTTGTAG
GAGCTGGCCGCTTCGTCCTCCGTGTGAAAATGTTTTACGGCACGTTGTTG
GCGCCTCGGATTGGCGGCATAGGGATGTGGATGTATGCTGTTCTGCGGTG
CCGTTGGCGCACTGGAATAATGGCGGCCCGCGGAGGAGCGAACCGGTTGC
TGCTCCTGGATTACACAGTCATCATCATCGTCGTCGTCGTCCTCCACTGG
CTCAATGGTCAACGTCGAGGTGTGTGCCGCTGGACGGGCGGGCATGATGG
CCTGCATGCCACCAGCATGATGTCTTGACTGCACCGCTCCGCGACTAGCG
CGCGATGTAAACTCCCTGTCAAACTGCTCGGCTTCTCCCTCCTCCAGATT
AATGAACTCCTGGCGCTCCTCCAGTTGTCCTGAGCGCATGTCCTGCTCTT
TCTCAATAATGTGTGCCCGCTCGCCGATGTGATGACCAATGGCCATCTTC
TTCACCCCAGTGCGCGAGTCCTGCACCGTCCTGCGGGTCTCACGAACGCC
TCCCGGTCCTGTTTTGGTACTAGTGCTGGCCTGGTAGATCTGAGGACGCC
CATCGGGACCCGATGACATGGTCATCACGGTGCTCTGGCAGAAGGATGCG
CCTGAATTGCCACCAATATCAGCGTTCAACAGGCGATTAAAGTTTGGCAT
CATGGGCATGCCGAAGAGGCCCATGGCTGGCATGGCCGGCATCTGCGGAC
GCTCCATGAGAGCGTTCTGCTGGAATCCCTGGTCAAAGGGCGAGACCTGC
ATGAAGGGATCGGGCATAAAGCTGTTCATCAGGCGATTCATCGAGCGCAT
CTGCATGTTCATCGCGTTCATAGTGTGGTTCATGTGGTTGTTCATAAGGC
CGAGATCGTCGTCGAAATCACCCAT

BS08849.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8295-PA 930 Mlf-RA 22..930 925..17 4545 100 Minus
CG8295-PD 1131 Mlf-RD 22..809 925..138 3940 100 Minus
CG8295-PB 822 Mlf-RB 22..809 925..138 3940 100 Minus
CG8295-PC 1125 Mlf-RC 50..803 891..138 3770 100 Minus
CG8295-PD 1131 Mlf-RD 1009..1131 139..17 615 100 Minus
CG8295-PC 1125 Mlf-RC 1003..1125 139..17 615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RA 1599 CG8295-RA 124..1032 925..17 4545 100 Minus
Mlf-RG 1501 CG8295-RG 61..934 890..17 4370 100 Minus
Mlf-RF 1387 CG8295-RF 141..1018 891..17 4335 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15938447..15938979 138..670 2665 100 Plus
2R 25286936 2R 15939037..15939257 670..890 1105 100 Plus
2R 25286936 2R 15936460..15936583 17..140 620 100 Plus
Blast to na_te.dros performed 2015-02-10 17:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 882..908 241..215 117 92.6 Minus

BS08849.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:55 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-PA 22..930 17..925 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:33 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8295-PA 22..930 17..925 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:43 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 124..1035 14..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:37 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 124..1035 14..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:37 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15936457..15936580 14..137 99 <- Plus
2R 15938447..15938978 138..669 100 <- Plus
2R 15939037..15939257 670..890 100 <- Plus
2R 15939910..15939944 891..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:43 Download gff for BS08849.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11823962..11824085 14..137 99 <- Plus
arm_2R 11825952..11826483 138..669 100 <- Plus
arm_2R 11826542..11826762 670..890 100 <- Plus
arm_2R 11827415..11827449 891..925 100   Plus

BS08849.5prime Sequence

914 bp (852 high quality bases) assembled on 2006-01-18

> BS08849.5prime
GAAGTTATCAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCG
ACGACGATCTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCG
ATGAACATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCC
CGATCCCTTCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACG
CTCTCATGGAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTC
GGCATGCCCATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGG
TGGCAATTCAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCAT
CGGGTCCCGATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAA
ACAGGACCGGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCG
CACTGGGGTGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCAC
ACATTATTGAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGC
CAGGAGTTCATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGA
GTTTACATCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTG
GTGGCATGCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACG
TTGACCATTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGT
AATCCAGGAGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCA
GTGCGCCAACGGCACCGCAGAACAGCATACATCCACATCCCTATGCCGCC
AATCCGAAGCGCCAACAACGTGCCGTAAAACATTTTCACACGGAGGACGA
AGCGGCCAGCTCCT

BS08849.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8295-PA 930 Mlf-RA 1..898 17..914 4465 99.8 Plus
CG8295-PD 1131 Mlf-RD 1..809 17..825 4045 100 Plus
CG8295-PB 822 Mlf-RB 1..809 17..825 4045 100 Plus
CG8295-PC 1125 Mlf-RC 50..803 72..825 3770 100 Plus
CG8295-PD 1131 Mlf-RD 1009..1099 824..914 430 98.9 Plus
CG8295-PC 1125 Mlf-RC 1003..1093 824..914 430 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RA 1599 CG8295-RA 103..1000 17..914 4475 99.9 Plus
Mlf-RG 1501 CG8295-RG 61..902 73..914 4195 99.9 Plus
Mlf-RF 1387 CG8295-RF 141..986 72..914 4160 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15938447..15938979 825..293 2665 100 Minus
2R 25286936 2R 15939037..15939257 293..73 1105 100 Minus
2R 25286936 2R 15936492..15936583 914..823 445 98.9 Minus
2R 25286936 2R 15939910..15939965 72..17 280 100 Minus
Blast to na_te.dros performed 2015-02-11 13:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 882..908 722..748 117 92.6 Plus

BS08849.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:56 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:35 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8295-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:43 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 103..1000 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:54 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 103..1000 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:54 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15936492..15936580 826..914 98 <- Minus
2R 15938447..15938978 294..825 100 <- Minus
2R 15939037..15939257 73..293 100 <- Minus
2R 15939910..15939965 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:43 Download gff for BS08849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11823997..11824085 826..914 98 <- Minus
arm_2R 11825952..11826483 294..825 100 <- Minus
arm_2R 11826542..11826762 73..293 100 <- Minus
arm_2R 11827415..11827470 17..72 100   Minus

BS08849.complete Sequence

962 bp (962 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636297

> BS08849.complete
GAAGTTATCAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCG
ACGACGATCTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCG
ATGAACATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCC
CGATCCCTTCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACG
CTCTCATGGAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTC
GGCATGCCCATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGG
TGGCAATTCAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCAT
CGGGTCCCGATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAA
ACAGGACCGGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCG
CACTGGGGTGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCAC
ACATTATTGAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGC
CAGGAGTTCATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGA
GTTTACATCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTG
GTGGCATGCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACG
TTGACCATTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGT
AATCCAGGAGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCA
GTGCGCCAACGGCACCGCAGAACAGCATACATCCACATCCCTATGCCGCC
AATCCGAGGCGCCAACAACGTGCCGTAAAACATTTTCACACGGAGGACGA
AGCGGCCAGCTCCTACAAGGCGGTCAAGCGCGGCAAGAAGAAGTAGAAGC
TTTCTAGACCAT

BS08849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RA 930 CG8295-PA 1..930 17..946 4650 100 Plus
Mlf-RG 867 CG8295-PG 1..867 80..946 4335 100 Plus
Mlf-RF 927 CG8295-PF 50..927 72..946 4310 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RA 1599 CG8295-RA 103..1032 17..946 4650 100 Plus
Mlf-RG 1501 CG8295-RG 61..934 73..946 4370 100 Plus
Mlf-RF 1387 CG8295-RF 141..1018 72..946 4310 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15938447..15938979 825..293 2665 100 Minus
2R 25286936 2R 15939037..15939257 293..73 1105 100 Minus
2R 25286936 2R 15936460..15936583 946..823 620 100 Minus
2R 25286936 2R 15939910..15939965 72..17 280 100 Minus
Blast to na_te.dros performed 2014-11-27 07:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 882..908 722..748 117 92.6 Plus

BS08849.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:31 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:38 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 109..1041 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:58 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 103..1032 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:31 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 109..1041 17..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:56 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 103..1032 17..946 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:56 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15936460..15936580 826..946 100 <- Minus
2R 15938447..15938978 294..825 100 <- Minus
2R 15939037..15939257 73..293 100 <- Minus
2R 15939910..15939965 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:58 Download gff for BS08849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11823965..11824085 826..946 100 <- Minus
arm_2R 11825952..11826483 294..825 100 <- Minus
arm_2R 11826542..11826762 73..293 100 <- Minus
arm_2R 11827415..11827470 17..72 100   Minus

BS08849.pep Sequence

Translation from 16 to 945

> BS08849.pep
MSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMRSMNRLMNSFMPDPFMQ
VSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMPNFNRLLNADIGGNSGA
SFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKK
MAIGHHIGERAHIIEKEQDMRSGQLEERQEFINLEEGEAEQFDREFTSRA
SRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQ
PVRSSAGRHYSSAPTAPQNSIHPHPYAANPRRQQRAVKHFHTEDEAASSY
KAVKRGKKK*

BS08849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-PA 309 CG8295-PA 1..309 1..309 1627 100 Plus
Mlf-PF 308 CG8295-PF 16..308 18..309 1519 99 Plus
Mlf-PG 288 CG8295-PG 1..288 22..309 1514 100 Plus
Mlf-PH 349 CG8295-PH 1..270 1..270 1417 100 Plus
Mlf-PB 273 CG8295-PB 1..269 1..269 1413 100 Plus