Clone Sequence Records
BS08852.3prime Sequence
981 bp (820 high quality bases) assembled on 2006-01-18
> BS08852.3prime
ATGGTCTAGAAAGCTTCTAGCTGGCCCTACGTTGTACATCCTGCGCTATC
TCTACGTGTTTCCGAGGACGCCAAAGCTCCAGCAAGCGCATTAAGAAGTG
GGCCACAACGAAGAACACCAGAAACCAGGATCCGTGCTGCCACACCGCAA
ACACCAGCTCGCTAGTGGTGAAAGAGCGTTCATTTAAAACGCGATCGTAC
ACCTTTACTGTGCGAAGGGCAACATCCTCCCAATTGTAAAGCGTTTCCAC
CAACTCATTACATCTATATGGACACATTACGGGCTCTGTAGAGCTGTTCT
GATCCGCAGGAGGAGCAGAGACTGCTGGCAGTTGTGTAGGAGAGATAGGA
GTATCGACTTTCCTGCGACGTCGCCGCTTAACCTTTCCATTAGCGTCCGA
GGCCAAATGCCCATTGCCAACTGATGGACTAACCTTAAAGGAACTCTTTC
GATGACGGTCGATGGCAATTAGAATCGCTGCGTAAATGGCATCAATTTCG
GGCTCTGCCAGCAGTATAAGACTCTTGGGTAGCACTTCGGGAATTCCGCC
CACACTGGTGGACACCACCTGCAGTCCACAGGAAGCCGCCTCAACGATGG
CCATGCAGTAGGCCTCAGTCAGTGAGGTATTCAAAAAGATGTGGCCACGC
ACCAGGAAATCGCGAACCCTGTTATGCTCCACGGCGCCCACCATTTGAAC
CCTTTCCTGCATATTGGTCTTTTCGCGAATCTCCTCCAGCAGATCACGCT
TAGGTCCATCGCCCACAATGATAAAGTTTATGTTGGGAGTGTTTTTGAAC
CGTGGAATGATGCCAGCTAGCAAATCAATGCCTTTGCGGTAGACAAGACG
GGAGGCCACTACAATGTTGATTATATCATTGCTCGGACGCTGNTGAGGAT
CGGGAGTAAACAGGGCAGTGTCGACTGCATTGGGAATGACGGAAACTCGA
TGTTTAGCTACTCGAGCGCGTAGAACAGTGT
BS08852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PA | 1440 | CG6401-RA | 476..1440 | 981..17 | 4806 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 612..1576 | 981..17 | 4814 | 99.9 | Minus |
CG6401-RA | 1642 | CG6401-RA | 612..1576 | 981..17 | 4814 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17737918..17738771 | 17..870 | 4270 | 100 | Plus |
2R | 25286936 | 2R | 17738828..17738938 | 871..981 | 544 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:22:34 has no hits.
BS08852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:01 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 476..1440 | 17..981 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:43 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 476..1440 | 17..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:04 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 612..1576 | 17..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:16 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 612..1576 | 17..981 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:16 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17737918..17738771 | 17..870 | 100 | <- | Plus |
2R | 17738828..17738938 | 871..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:04 Download gff for
BS08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13625423..13626276 | 17..870 | 100 | <- | Plus |
arm_2R | 13626333..13626443 | 871..981 | 99 | | Plus |
BS08852.5prime Sequence
909 bp (763 high quality bases) assembled on 2006-01-18
> BS08852.5prime
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGANGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCCAGTGGT
BS08852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PA | 1440 | CG6401-RA | 1..886 | 17..902 | 4411 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 137..1029 | 17..909 | 4424 | 99.7 | Plus |
CG6401-RA | 1642 | CG6401-RA | 137..1029 | 17..909 | 4424 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17738465..17738771 | 909..603 | 1494 | 99 | Minus |
2R | 25286936 | 2R | 17739133..17739380 | 364..117 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 17738828..17739067 | 602..363 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 3384077..3384249 | 106..278 | 610 | 90.2 | Plus |
2R | 25286936 | 2R | 17739448..17739549 | 118..17 | 510 | 100 | Minus |
2R | 25286936 | 2R | 3384246..3384349 | 314..417 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:31:22 has no hits.
BS08852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:02 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:44 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:12 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 129..1029 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:58:20 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 129..1029 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:58:20 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17738828..17739065 | 365..602 | 100 | <- | Minus |
2R | 17739133..17739378 | 119..364 | 100 | <- | Minus |
2R | 17739448..17739557 | 10..118 | 96 | | Minus |
2R | 17738465..17738771 | 603..909 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:12 Download gff for
BS08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13625970..13626276 | 603..909 | 99 | <- | Minus |
arm_2R | 13626333..13626570 | 365..602 | 100 | <- | Minus |
arm_2R | 13626638..13626883 | 119..364 | 100 | <- | Minus |
arm_2R | 13626953..13627062 | 10..118 | 96 | | Minus |
BS08852.complete Sequence
1472 bp (1472 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636299
> BS08852.complete
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGAGGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCAGGTGGTGTCCACCAGTGTGGGCGGAATTCCCGAAGTGCTACCCAAGA
GTCTTATACTGCTGGCAGAGCCCGAAATTGATGCCATTTACGCAGCGATT
CTAATTGCCATCGACCGTCATCGAAAGAGTTCCTTTAAGGTTAGTCCATC
AGTTGGCAATGGGCATTTGGCCTCGGACGCTAATGGAAAGGTTAAGCGGC
GACGTCGCAGGAAAGTCGATACTCCTATCTCTCCTACACAACTGCCAGCA
GTCTCTGCTCCTCCTGCGGATCAGAACAGCTCTACAGAGCCCGTAATGTG
TCCATATAGATGTAATGAGTTGGTGGAAACGCTTTACAATTGGGAGGATG
TTGCCCTTCGCACAGTAAAGGTGTACGATCGCGTTTTAAATGAACGCTCT
TTCACCACTAGCGAGCTGGTGTTTGCGGTGTGGCAGCACGGATCCTGGTT
TCTGGTGTTCTTCGTTGTGGCCCACTTCTTAATGCGCTTGCTGGAGCTTT
GGCGTCCTCGGAAACACGTAGAGATAGCGCAGGATGTACAACGTAGGGCC
AGCTAGAAGCTTTCTAGACCAT
BS08852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1440 | CG6401-PB | 1..1440 | 17..1456 | 7200 | 100 | Plus |
CG6401-RA | 1440 | CG6401-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 137..1576 | 17..1456 | 7200 | 100 | Plus |
CG6401-RA | 1642 | CG6401-RA | 137..1576 | 17..1456 | 7200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17737918..17738771 | 1456..603 | 4270 | 100 | Minus |
2R | 25286936 | 2R | 17739133..17739380 | 364..117 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 17738828..17739067 | 602..363 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 3384077..3384249 | 106..278 | 610 | 90.2 | Plus |
2R | 25286936 | 2R | 17739448..17739549 | 118..17 | 510 | 100 | Minus |
2R | 25286936 | 2R | 3384246..3384349 | 314..417 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:02:07 has no hits.
BS08852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:50 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 1..1440 | 17..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:56 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 101..1548 | 10..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:50 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 137..1576 | 17..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:50 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 101..1548 | 10..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:19 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 137..1576 | 17..1456 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:19 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17737918..17738771 | 603..1456 | 100 | <- | Minus |
2R | 17738828..17739065 | 365..602 | 100 | <- | Minus |
2R | 17739133..17739378 | 119..364 | 100 | <- | Minus |
2R | 17739448..17739549 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:50 Download gff for
BS08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13626638..13626883 | 119..364 | 100 | <- | Minus |
arm_2R | 13626953..13627054 | 17..118 | 100 | | Minus |
arm_2R | 13625423..13626276 | 603..1456 | 100 | <- | Minus |
arm_2R | 13626333..13626570 | 365..602 | 100 | <- | Minus |
BS08852.pep Sequence
Translation from 16 to 1455
> BS08852.pep
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRAS*
BS08852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PB | 479 | CG6401-PB | 1..479 | 1..479 | 2464 | 100 | Plus |
CG6401-PA | 479 | CG6401-PA | 1..479 | 1..479 | 2464 | 100 | Plus |