Clone BS08852 Report

Search the DGRC for BS08852

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG6401-RA
Protein status:BS08852.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08852.3prime Sequence

981 bp (820 high quality bases) assembled on 2006-01-18

> BS08852.3prime
ATGGTCTAGAAAGCTTCTAGCTGGCCCTACGTTGTACATCCTGCGCTATC
TCTACGTGTTTCCGAGGACGCCAAAGCTCCAGCAAGCGCATTAAGAAGTG
GGCCACAACGAAGAACACCAGAAACCAGGATCCGTGCTGCCACACCGCAA
ACACCAGCTCGCTAGTGGTGAAAGAGCGTTCATTTAAAACGCGATCGTAC
ACCTTTACTGTGCGAAGGGCAACATCCTCCCAATTGTAAAGCGTTTCCAC
CAACTCATTACATCTATATGGACACATTACGGGCTCTGTAGAGCTGTTCT
GATCCGCAGGAGGAGCAGAGACTGCTGGCAGTTGTGTAGGAGAGATAGGA
GTATCGACTTTCCTGCGACGTCGCCGCTTAACCTTTCCATTAGCGTCCGA
GGCCAAATGCCCATTGCCAACTGATGGACTAACCTTAAAGGAACTCTTTC
GATGACGGTCGATGGCAATTAGAATCGCTGCGTAAATGGCATCAATTTCG
GGCTCTGCCAGCAGTATAAGACTCTTGGGTAGCACTTCGGGAATTCCGCC
CACACTGGTGGACACCACCTGCAGTCCACAGGAAGCCGCCTCAACGATGG
CCATGCAGTAGGCCTCAGTCAGTGAGGTATTCAAAAAGATGTGGCCACGC
ACCAGGAAATCGCGAACCCTGTTATGCTCCACGGCGCCCACCATTTGAAC
CCTTTCCTGCATATTGGTCTTTTCGCGAATCTCCTCCAGCAGATCACGCT
TAGGTCCATCGCCCACAATGATAAAGTTTATGTTGGGAGTGTTTTTGAAC
CGTGGAATGATGCCAGCTAGCAAATCAATGCCTTTGCGGTAGACAAGACG
GGAGGCCACTACAATGTTGATTATATCATTGCTCGGACGCTGNTGAGGAT
CGGGAGTAAACAGGGCAGTGTCGACTGCATTGGGAATGACGGAAACTCGA
TGTTTAGCTACTCGAGCGCGTAGAACAGTGT

BS08852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PA 1440 CG6401-RA 476..1440 981..17 4806 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 612..1576 981..17 4814 99.9 Minus
CG6401-RA 1642 CG6401-RA 612..1576 981..17 4814 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17737918..17738771 17..870 4270 100 Plus
2R 25286936 2R 17738828..17738938 871..981 544 99.1 Plus
Blast to na_te.dros performed on 2015-02-06 10:22:34 has no hits.

BS08852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:01 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 476..1440 17..981 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:43 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 476..1440 17..981 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:04 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 612..1576 17..981 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:16 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 612..1576 17..981 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:16 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17737918..17738771 17..870 100 <- Plus
2R 17738828..17738938 871..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:04 Download gff for BS08852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13625423..13626276 17..870 100 <- Plus
arm_2R 13626333..13626443 871..981 99   Plus

BS08852.5prime Sequence

909 bp (763 high quality bases) assembled on 2006-01-18

> BS08852.5prime
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGANGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCCAGTGGT

BS08852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PA 1440 CG6401-RA 1..886 17..902 4411 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 137..1029 17..909 4424 99.7 Plus
CG6401-RA 1642 CG6401-RA 137..1029 17..909 4424 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17738465..17738771 909..603 1494 99 Minus
2R 25286936 2R 17739133..17739380 364..117 1240 100 Minus
2R 25286936 2R 17738828..17739067 602..363 1200 100 Minus
2R 25286936 2R 3384077..3384249 106..278 610 90.2 Plus
2R 25286936 2R 17739448..17739549 118..17 510 100 Minus
2R 25286936 2R 3384246..3384349 314..417 265 83.7 Plus
Blast to na_te.dros performed on 2015-02-10 23:31:22 has no hits.

BS08852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:02 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:44 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:12 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 129..1029 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:58:20 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 129..1029 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:58:20 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17738828..17739065 365..602 100 <- Minus
2R 17739133..17739378 119..364 100 <- Minus
2R 17739448..17739557 10..118 96   Minus
2R 17738465..17738771 603..909 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:12 Download gff for BS08852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13625970..13626276 603..909 99 <- Minus
arm_2R 13626333..13626570 365..602 100 <- Minus
arm_2R 13626638..13626883 119..364 100 <- Minus
arm_2R 13626953..13627062 10..118 96   Minus

BS08852.complete Sequence

1472 bp (1472 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636299

> BS08852.complete
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGAGGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCAGGTGGTGTCCACCAGTGTGGGCGGAATTCCCGAAGTGCTACCCAAGA
GTCTTATACTGCTGGCAGAGCCCGAAATTGATGCCATTTACGCAGCGATT
CTAATTGCCATCGACCGTCATCGAAAGAGTTCCTTTAAGGTTAGTCCATC
AGTTGGCAATGGGCATTTGGCCTCGGACGCTAATGGAAAGGTTAAGCGGC
GACGTCGCAGGAAAGTCGATACTCCTATCTCTCCTACACAACTGCCAGCA
GTCTCTGCTCCTCCTGCGGATCAGAACAGCTCTACAGAGCCCGTAATGTG
TCCATATAGATGTAATGAGTTGGTGGAAACGCTTTACAATTGGGAGGATG
TTGCCCTTCGCACAGTAAAGGTGTACGATCGCGTTTTAAATGAACGCTCT
TTCACCACTAGCGAGCTGGTGTTTGCGGTGTGGCAGCACGGATCCTGGTT
TCTGGTGTTCTTCGTTGTGGCCCACTTCTTAATGCGCTTGCTGGAGCTTT
GGCGTCCTCGGAAACACGTAGAGATAGCGCAGGATGTACAACGTAGGGCC
AGCTAGAAGCTTTCTAGACCAT

BS08852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1440 CG6401-PB 1..1440 17..1456 7200 100 Plus
CG6401-RA 1440 CG6401-PA 1..1440 17..1456 7200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 137..1576 17..1456 7200 100 Plus
CG6401-RA 1642 CG6401-RA 137..1576 17..1456 7200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17737918..17738771 1456..603 4270 100 Minus
2R 25286936 2R 17739133..17739380 364..117 1240 100 Minus
2R 25286936 2R 17738828..17739067 602..363 1200 100 Minus
2R 25286936 2R 3384077..3384249 106..278 610 90.2 Plus
2R 25286936 2R 17739448..17739549 118..17 510 100 Minus
2R 25286936 2R 3384246..3384349 314..417 265 83.7 Plus
Blast to na_te.dros performed on 2014-11-27 02:02:07 has no hits.

BS08852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:50 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 17..1456 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:56 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 101..1548 10..1456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:50 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 137..1576 17..1456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:50 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 101..1548 10..1456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:19 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 137..1576 17..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:19 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17737918..17738771 603..1456 100 <- Minus
2R 17738828..17739065 365..602 100 <- Minus
2R 17739133..17739378 119..364 100 <- Minus
2R 17739448..17739549 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:50 Download gff for BS08852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13626638..13626883 119..364 100 <- Minus
arm_2R 13626953..13627054 17..118 100   Minus
arm_2R 13625423..13626276 603..1456 100 <- Minus
arm_2R 13626333..13626570 365..602 100 <- Minus

BS08852.pep Sequence

Translation from 16 to 1455

> BS08852.pep
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRAS*

BS08852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PB 479 CG6401-PB 1..479 1..479 2464 100 Plus
CG6401-PA 479 CG6401-PA 1..479 1..479 2464 100 Plus