Clone BS08854 Report

Search the DGRC for BS08854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptBEAF-32-RB
Protein status:BS08854.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08854.3prime Sequence

879 bp (845 high quality bases) assembled on 2006-01-18

> BS08854.3prime
ATGGTCTAGAAAGCTTCTACTCATCCTTGGCAAGCGTTGAGTCCTCACTT
TCCTTGAACAGTATATCCTGGATCTTGGACCGCACGTACATCTTCCGACT
GAGCGAAAGGTGGCGCATTGCGGGCACCAAGCTAAGTGCAAAATAGTAGT
CGTCGTCCTTGGTGAGCTCCTCGTGATTCTGTTGTATGATGTAGCTGAGC
TGTTCGCTGACAGCGGTCAGCCGTTCGATGGACGTCTCCAGGTTGTTCTT
CAGCTGCTTGGCCGAGCTGCTGCTGGAGGACGTGGAGGCCACCACAGTAG
CCTGTACGCCCGAACCAACACCGATGGGCCTGCTACTTCCACCGGCTGGT
GAAGTCGAATGGGTTAGCACGGTCACTTGCTTCTCAGGCTGATCCAGGCC
CTCATCATCCATCACGTGTATAGGACTATAGCACAGTGGATCCTCGCTGT
ATATGATGTCCTTAATGTCCTCGCTAATCTCATCGTTCTGCTCGTACTCC
TCCCACTTTTGCGGCAGGGCGCCCGCCTCGCCCAGATAATTGGCGACGTT
CGACTCGATCTTCGGCTTGGCCACACGCAGCGGCTCCCTCAGCGTCTTGG
CCTTGGTAATCCGCACGGTTTTGTCTTTCTTGATGATTGGGATCATCCGG
GCCTGGGGACGTTGCTGCACCGGACTGACCAGCACCTCGTCCCTGTGCTT
GTGCCGCAGATGCGTCCACAAATTGGTCGTATTGTTGCCCTTCAAATTGC
TGGCCATGCCACCACGCGATATATTGTTGCCGCAATAACGGCATATCGCA
NAGTTTTCGCACTCCTCGTTAATATCGTAGTGCTGCCACACATTGCTAAC
ACGACCCTTGGGCATGTCGACTGATAACT

BS08854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10159-PB 849 BEAF-32-RB 1..849 865..17 4226 99.8 Minus
CG10159-PA 852 BEAF-32-RA 244..852 625..17 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RC 1558 CG10159-RC 487..1335 865..17 4234 99.9 Minus
BEAF-32-RB 1173 CG10159-RB 102..950 865..17 4234 99.9 Minus
BEAF-32-RA 1192 CG10159-RA 361..969 625..17 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14771798..14772407 626..17 3050 100 Minus
2R 25286936 2R 14771402..14771642 865..625 1194 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 11:08:46 has no hits.

BS08854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:03 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10159-PB 1..849 17..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:45 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10159-PB 1..849 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:23 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..956 9..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:27 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..956 9..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:27 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14771402..14771642 625..865 99 -> Minus
2R 14771800..14772413 9..624 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:23 Download gff for BS08854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10658907..10659147 625..865 99 -> Minus
arm_2R 10659305..10659918 9..624 99   Minus

BS08854.5prime Sequence

866 bp (859 high quality bases) assembled on 2006-01-18

> BS08854.5prime
GAAGTTATCAGTCGACATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCAAGGATGAGTAGA

BS08854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10159-PB 849 BEAF-32-RB 1..849 17..865 4245 100 Plus
CG10159-PA 852 BEAF-32-RA 244..852 257..865 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RC 1558 CG10159-RC 487..1335 17..865 4245 100 Plus
BEAF-32-RB 1173 CG10159-RB 102..950 17..865 4245 100 Plus
BEAF-32-RA 1192 CG10159-RA 361..969 257..865 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14771798..14772407 256..865 3050 100 Plus
2R 25286936 2R 14771402..14771642 17..257 1205 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:31:40 has no hits.

BS08854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:04 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10159-PB 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:47 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10159-PB 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:55 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..950 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:01 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..950 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:01 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14771402..14771642 17..257 100 -> Plus
2R 14771800..14772407 258..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:55 Download gff for BS08854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10658907..10659147 17..257 100 -> Plus
arm_2R 10659305..10659912 258..865 100   Plus

BS08854.complete Sequence

881 bp (881 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636300

> BS08854.complete
GAAGTTATCAGTCGACATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCAAGGATGAGTAGAAGCTTTCTAGACCAT

BS08854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RC 849 CG10159-PC 1..849 17..865 4245 100 Plus
BEAF-32-RB 849 CG10159-PB 1..849 17..865 4245 100 Plus
BEAF-32-RA 852 CG10159-PA 244..852 257..865 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RC 1558 CG10159-RC 487..1335 17..865 4245 100 Plus
BEAF-32-RB 1173 CG10159-RB 102..950 17..865 4245 100 Plus
BEAF-32-RA 1192 CG10159-RA 361..969 257..865 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14771798..14772407 256..865 3050 100 Plus
2R 25286936 2R 14771402..14771642 17..257 1205 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:39:58 has no hits.

BS08854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:03 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:17 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 465..1319 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:09 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..950 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:03 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 465..1319 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:09 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 102..950 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:09 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14771402..14771642 17..257 100 -> Plus
2R 14771800..14772407 258..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:09 Download gff for BS08854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10658907..10659147 17..257 100 -> Plus
arm_2R 10659305..10659912 258..865 100   Plus

BS08854.pep Sequence

Translation from 16 to 864

> BS08854.pep
MPKGRVSNVWQHYDINEECENFAICRYCGNNISRGGMASNLKGNNTTNLW
THLRHKHRDEVLVSPVQQRPQARMIPIIKKDKTVRITKAKTLREPLRVAK
PKIESNVANYLGEAGALPQKWEEYEQNDEISEDIKDIIYSEDPLCYSPIH
VMDDEGLDQPEKQVTVLTHSTSPAGGSSRPIGVGSGVQATVVASTSSSSS
SAKQLKNNLETSIERLTAVSEQLSYIIQQNHEELTKDDDYYFALSLVPAM
RHLSLSRKMYVRSKIQDILFKESEDSTLAKDE*

BS08854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-PC 282 CG10159-PC 1..282 1..282 1457 100 Plus
BEAF-32-PB 282 CG10159-PB 1..282 1..282 1457 100 Plus
BEAF-32-PA 283 CG10159-PA 25..283 2..282 1034 76.2 Plus