Clone Sequence Records
BS08854.3prime Sequence
879 bp (845 high quality bases) assembled on 2006-01-18
> BS08854.3prime
ATGGTCTAGAAAGCTTCTACTCATCCTTGGCAAGCGTTGAGTCCTCACTT
TCCTTGAACAGTATATCCTGGATCTTGGACCGCACGTACATCTTCCGACT
GAGCGAAAGGTGGCGCATTGCGGGCACCAAGCTAAGTGCAAAATAGTAGT
CGTCGTCCTTGGTGAGCTCCTCGTGATTCTGTTGTATGATGTAGCTGAGC
TGTTCGCTGACAGCGGTCAGCCGTTCGATGGACGTCTCCAGGTTGTTCTT
CAGCTGCTTGGCCGAGCTGCTGCTGGAGGACGTGGAGGCCACCACAGTAG
CCTGTACGCCCGAACCAACACCGATGGGCCTGCTACTTCCACCGGCTGGT
GAAGTCGAATGGGTTAGCACGGTCACTTGCTTCTCAGGCTGATCCAGGCC
CTCATCATCCATCACGTGTATAGGACTATAGCACAGTGGATCCTCGCTGT
ATATGATGTCCTTAATGTCCTCGCTAATCTCATCGTTCTGCTCGTACTCC
TCCCACTTTTGCGGCAGGGCGCCCGCCTCGCCCAGATAATTGGCGACGTT
CGACTCGATCTTCGGCTTGGCCACACGCAGCGGCTCCCTCAGCGTCTTGG
CCTTGGTAATCCGCACGGTTTTGTCTTTCTTGATGATTGGGATCATCCGG
GCCTGGGGACGTTGCTGCACCGGACTGACCAGCACCTCGTCCCTGTGCTT
GTGCCGCAGATGCGTCCACAAATTGGTCGTATTGTTGCCCTTCAAATTGC
TGGCCATGCCACCACGCGATATATTGTTGCCGCAATAACGGCATATCGCA
NAGTTTTCGCACTCCTCGTTAATATCGTAGTGCTGCCACACATTGCTAAC
ACGACCCTTGGGCATGTCGACTGATAACT
BS08854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10159-PB | 849 | BEAF-32-RB | 1..849 | 865..17 | 4226 | 99.8 | Minus |
CG10159-PA | 852 | BEAF-32-RA | 244..852 | 625..17 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 487..1335 | 865..17 | 4234 | 99.9 | Minus |
BEAF-32-RB | 1173 | CG10159-RB | 102..950 | 865..17 | 4234 | 99.9 | Minus |
BEAF-32-RA | 1192 | CG10159-RA | 361..969 | 625..17 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772407 | 626..17 | 3050 | 100 | Minus |
2R | 25286936 | 2R | 14771402..14771642 | 865..625 | 1194 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:46 has no hits.
BS08854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:03 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:45 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:23 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..956 | 9..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:27 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..956 | 9..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:27 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771402..14771642 | 625..865 | 99 | -> | Minus |
2R | 14771800..14772413 | 9..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:23 Download gff for
BS08854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658907..10659147 | 625..865 | 99 | -> | Minus |
arm_2R | 10659305..10659918 | 9..624 | 99 | | Minus |
BS08854.5prime Sequence
866 bp (859 high quality bases) assembled on 2006-01-18
> BS08854.5prime
GAAGTTATCAGTCGACATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCAAGGATGAGTAGA
BS08854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10159-PB | 849 | BEAF-32-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
CG10159-PA | 852 | BEAF-32-RA | 244..852 | 257..865 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 487..1335 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RB | 1173 | CG10159-RB | 102..950 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RA | 1192 | CG10159-RA | 361..969 | 257..865 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772407 | 256..865 | 3050 | 100 | Plus |
2R | 25286936 | 2R | 14771402..14771642 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:31:40 has no hits.
BS08854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:04 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:47 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:55 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..950 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:01 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..950 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:01 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771402..14771642 | 17..257 | 100 | -> | Plus |
2R | 14771800..14772407 | 258..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:55 Download gff for
BS08854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658907..10659147 | 17..257 | 100 | -> | Plus |
arm_2R | 10659305..10659912 | 258..865 | 100 | | Plus |
BS08854.complete Sequence
881 bp (881 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636300
> BS08854.complete
GAAGTTATCAGTCGACATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCAAGGATGAGTAGAAGCTTTCTAGACCAT
BS08854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 849 | CG10159-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RB | 849 | CG10159-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RA | 852 | CG10159-PA | 244..852 | 257..865 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 487..1335 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RB | 1173 | CG10159-RB | 102..950 | 17..865 | 4245 | 100 | Plus |
BEAF-32-RA | 1192 | CG10159-RA | 361..969 | 257..865 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772407 | 256..865 | 3050 | 100 | Plus |
2R | 25286936 | 2R | 14771402..14771642 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:39:58 has no hits.
BS08854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:03 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:17 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 465..1319 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:09 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..950 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:03 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 465..1319 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:09 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..950 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:09 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771402..14771642 | 17..257 | 100 | -> | Plus |
2R | 14771800..14772407 | 258..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:09 Download gff for
BS08854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658907..10659147 | 17..257 | 100 | -> | Plus |
arm_2R | 10659305..10659912 | 258..865 | 100 | | Plus |
BS08854.pep Sequence
Translation from 16 to 864
> BS08854.pep
MPKGRVSNVWQHYDINEECENFAICRYCGNNISRGGMASNLKGNNTTNLW
THLRHKHRDEVLVSPVQQRPQARMIPIIKKDKTVRITKAKTLREPLRVAK
PKIESNVANYLGEAGALPQKWEEYEQNDEISEDIKDIIYSEDPLCYSPIH
VMDDEGLDQPEKQVTVLTHSTSPAGGSSRPIGVGSGVQATVVASTSSSSS
SAKQLKNNLETSIERLTAVSEQLSYIIQQNHEELTKDDDYYFALSLVPAM
RHLSLSRKMYVRSKIQDILFKESEDSTLAKDE*
BS08854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-PC | 282 | CG10159-PC | 1..282 | 1..282 | 1457 | 100 | Plus |
BEAF-32-PB | 282 | CG10159-PB | 1..282 | 1..282 | 1457 | 100 | Plus |
BEAF-32-PA | 283 | CG10159-PA | 25..283 | 2..282 | 1034 | 76.2 | Plus |