Clone Sequence Records
BS08856.3prime Sequence
878 bp (844 high quality bases) assembled on 2006-01-18
> BS08856.3prime
ATGGTCTAGAAAGCTTTTAGCTGTAAAATTTCGTGTTTATTTCGCGTCTC
TTCAATTTGACTTTCAGCCCATCCTTTGTGTGTATAAAAGGAGCTGGCCG
GTGGGAAACTTTAAGGGTCTTCACCTGGTTCGCATCCAATTCCAAATGAA
AGTTTTGGAGTAATTTGATCAGGGCCACTTTAATTACCAACTTTGCAAAG
TTCTGTCCCACACACTGCGATCCCCCAATGCCAAATCCTATAAAAACATT
GCTCTTTGTCTTGTCTTCACATTGGCCCACATCGTTGGCAGTTTGCAGAA
ATCGAAGTGGCTTGTATTTCATAGGCTCACTGAAGTATTTTTCATCTCGG
TGCATAGCCAGTAGAGGCACCATCAAAGTCTTTCCCTCATCAATTGTGAA
TTTTGAATTGGGTAGCGAATAACTTTTGCGGCAAACACGTTCAATAATGG
GTAGAGGTGGATATTTGCGAAGAGTTTCTTTCAAGCACATGTCCATATAC
CTAAGACCATTAAGCTCTTCAAATTTGAGCTGACCATTTTCATTGCTTAG
CTCCTTTATTTCCGCTCTCAGTTTTTCCACTATTAAAGGTTCTTGCAGGA
TTTCCAAGAGAGTGAAGGTTACAGTTGAAGCTACTGCATCTAGAGATACT
TTCAAGAGATCCTCGGCAACTTTGGCCAAGCGTTTGATGGACAACAGTTT
GTCTGCATCATTAATCGGTTCTAGTTGCCATTTATCGCCGCTAACTTCGT
TGCCATTTCTAAATCTGACTAGTAGTTGTAGAATATCTTTACGTATCAGT
CCATGATCTTCTCGTAGTTCAACGCTTTGTTTAATGAGATCTCTTAAGCG
GTAGGTATATGAAGATTTCTGCGGCAGG
BS08856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10391-PA | 1479 | Cyp310a1-RA | 618..1479 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 684..1546 | 878..16 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18651425..18651697 | 207..479 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 18651755..18651986 | 478..709 | 1160 | 100 | Plus |
2L | 23513712 | 2L | 18651170..18651362 | 16..208 | 965 | 100 | Plus |
2L | 23513712 | 2L | 18652038..18652207 | 709..878 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:40 has no hits.
BS08856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:08 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 618..1479 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:51 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 618..1479 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:20 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 684..1548 | 12..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:59 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 684..1548 | 12..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:59 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18651168..18651361 | 12..207 | 98 | <- | Plus |
2L | 18651426..18651695 | 208..477 | 100 | <- | Plus |
2L | 18651755..18651985 | 478..708 | 100 | <- | Plus |
2L | 18652038..18652207 | 709..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:20 Download gff for
BS08856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651168..18651361 | 12..207 | 98 | <- | Plus |
arm_2L | 18651426..18651695 | 208..477 | 100 | <- | Plus |
arm_2L | 18651755..18651985 | 478..708 | 100 | <- | Plus |
arm_2L | 18652038..18652207 | 709..878 | 100 | | Plus |
BS08856.5prime Sequence
835 bp (806 high quality bases) assembled on 2006-01-18
> BS08856.5prime
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAGACAAACTGTTGTCCATCAAACGCTTG
BS08856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10391-PA | 1479 | Cyp310a1-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 67..885 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18652457..18652944 | 504..17 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 18652038..18652219 | 803..622 | 910 | 100 | Minus |
2L | 23513712 | 2L | 18652281..18652397 | 621..505 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:59:28 has no hits.
BS08856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:09 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:52 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:38 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 63..885 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:38 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 63..885 | 9..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:38 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18651954..18651985 | 804..835 | 100 | <- | Minus |
2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
2L | 18652457..18652948 | 9..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:38 Download gff for
BS08856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651954..18651985 | 804..835 | 100 | <- | Minus |
arm_2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
arm_2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
arm_2L | 18652457..18652948 | 9..504 | 99 | | Minus |
BS08856.complete Sequence
1511 bp (1511 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636301
> BS08856.complete
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAGACAAACTGTTGTCCATCAAACGCTTGGCCAAAGTTGCCGAG
GATCTCTTGAAAGTATCTCTAGATGCAGTAGCTTCAACTGTAACCTTCAC
TCTCTTGGAAATCCTGCAAGAACCTTTAATAGTGGAAAAACTGAGAGCGG
AAATAAAGGAGCTAAGCAATGAAAATGGTCAGCTCAAATTTGAAGAGCTT
AATGGTCTTAGGTATATGGACATGTGCTTGAAAGAAACTCTTCGCAAATA
TCCACCTCTACCCATTATTGAACGTGTTTGCCGCAAAAGTTATTCGCTAC
CCAATTCAAAATTCACAATTGATGAGGGAAAGACTTTGATGGTGCCTCTA
CTGGCTATGCACCGAGATGAAAAATACTTCAGTGAGCCTATGAAATACAA
GCCACTTCGATTTCTGCAAACTGCCAACGATGTGGGCCAATGTGAAGACA
AGACAAAGAGCAATGTTTTTATAGGATTTGGCATTGGGGGATCGCAGTGT
GTGGGACAGAACTTTGCAAAGTTGGTAATTAAAGTGGCCCTGATCAAATT
ACTCCAAAACTTTCATTTGGAATTGGATGCGAACCAGGTGAAGACCCTTA
AAGTTTCCCACCGGCCAGCTCCTTTTATACACACAAAGGATGGGCTGAAA
GTCAAATTGAAGAGACGCGAAATAAACACGAAATTTTACAGCTAAAAGCT
TTCTAGACCAT
BS08856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1479 | CG10391-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 67..1546 | 17..1496 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18652457..18652944 | 504..17 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 18651425..18651697 | 1305..1033 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 18651755..18651986 | 1034..803 | 1160 | 100 | Minus |
2L | 23513712 | 2L | 18651170..18651362 | 1496..1304 | 965 | 100 | Minus |
2L | 23513712 | 2L | 18652038..18652219 | 803..622 | 910 | 100 | Minus |
2L | 23513712 | 2L | 18652281..18652397 | 621..505 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:34 has no hits.
BS08856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:51 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 1..1479 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:57 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 37..1522 | 9..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:47 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 67..1543 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:51 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 37..1522 | 9..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:54 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 67..1543 | 17..1493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:54 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18652457..18652944 | 17..504 | 100 | | Minus |
2L | 18651173..18651361 | 1305..1493 | 100 | <- | Minus |
2L | 18651426..18651695 | 1035..1304 | 100 | <- | Minus |
2L | 18651755..18651985 | 804..1034 | 100 | <- | Minus |
2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:47 Download gff for
BS08856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651173..18651361 | 1305..1493 | 100 | <- | Minus |
arm_2L | 18651426..18651695 | 1035..1304 | 100 | <- | Minus |
arm_2L | 18651755..18651985 | 804..1034 | 100 | <- | Minus |
arm_2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
arm_2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
arm_2L | 18652457..18652944 | 17..504 | 100 | | Minus |
BS08856.pep Sequence
Translation from 16 to 1494
> BS08856.pep
MWLLLPILLYSAVFLSVRHIYSHWRRRGFPSEKAGITWSFLQKAYRREFR
HVEAICEAYQSGKDRLLGIYCFFRPVLLVRNVELAQTILQQSNGHFSELK
WDYISGYRRFNLLEKLAPMFGTKRLSEMFGQVQKVGDHLIHHLLDRQGQG
CPQEVDIQQKLRVYSVNIIANLIYGLDINNFEHEDHILTSYLSHSQASIQ
SFTLGRLPQKSSYTYRLRDLIKQSVELREDHGLIRKDILQLLVRFRNGNE
VSGDKWQLEPINDADKLLSIKRLAKVAEDLLKVSLDAVASTVTFTLLEIL
QEPLIVEKLRAEIKELSNENGQLKFEELNGLRYMDMCLKETLRKYPPLPI
IERVCRKSYSLPNSKFTIDEGKTLMVPLLAMHRDEKYFSEPMKYKPLRFL
QTANDVGQCEDKTKSNVFIGFGIGGSQCVGQNFAKLVIKVALIKLLQNFH
LELDANQVKTLKVSHRPAPFIHTKDGLKVKLKRREINTKFYS*
BS08856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-PA | 492 | CG10391-PA | 1..492 | 1..492 | 2542 | 100 | Plus |
Cyp6d4-PA | 515 | CG12800-PA | 5..510 | 3..484 | 659 | 30 | Plus |
Cyp6d5-PA | 508 | CG3050-PA | 4..478 | 3..453 | 639 | 29.6 | Plus |
Cyp6d2-PA | 512 | CG4373-PA | 1..512 | 1..485 | 589 | 28.4 | Plus |
Cyp6a22-PC | 499 | CG10240-PC | 7..464 | 5..453 | 431 | 26.3 | Plus |