Clone BS08856 Report

Search the DGRC for BS08856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCyp310a1-RA
Protein status:BS08856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08856.3prime Sequence

878 bp (844 high quality bases) assembled on 2006-01-18

> BS08856.3prime
ATGGTCTAGAAAGCTTTTAGCTGTAAAATTTCGTGTTTATTTCGCGTCTC
TTCAATTTGACTTTCAGCCCATCCTTTGTGTGTATAAAAGGAGCTGGCCG
GTGGGAAACTTTAAGGGTCTTCACCTGGTTCGCATCCAATTCCAAATGAA
AGTTTTGGAGTAATTTGATCAGGGCCACTTTAATTACCAACTTTGCAAAG
TTCTGTCCCACACACTGCGATCCCCCAATGCCAAATCCTATAAAAACATT
GCTCTTTGTCTTGTCTTCACATTGGCCCACATCGTTGGCAGTTTGCAGAA
ATCGAAGTGGCTTGTATTTCATAGGCTCACTGAAGTATTTTTCATCTCGG
TGCATAGCCAGTAGAGGCACCATCAAAGTCTTTCCCTCATCAATTGTGAA
TTTTGAATTGGGTAGCGAATAACTTTTGCGGCAAACACGTTCAATAATGG
GTAGAGGTGGATATTTGCGAAGAGTTTCTTTCAAGCACATGTCCATATAC
CTAAGACCATTAAGCTCTTCAAATTTGAGCTGACCATTTTCATTGCTTAG
CTCCTTTATTTCCGCTCTCAGTTTTTCCACTATTAAAGGTTCTTGCAGGA
TTTCCAAGAGAGTGAAGGTTACAGTTGAAGCTACTGCATCTAGAGATACT
TTCAAGAGATCCTCGGCAACTTTGGCCAAGCGTTTGATGGACAACAGTTT
GTCTGCATCATTAATCGGTTCTAGTTGCCATTTATCGCCGCTAACTTCGT
TGCCATTTCTAAATCTGACTAGTAGTTGTAGAATATCTTTACGTATCAGT
CCATGATCTTCTCGTAGTTCAACGCTTTGTTTAATGAGATCTCTTAAGCG
GTAGGTATATGAAGATTTCTGCGGCAGG

BS08856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10391-PA 1479 Cyp310a1-RA 618..1479 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp310a1-RA 1658 CG10391-RA 684..1546 878..16 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18651425..18651697 207..479 1365 100 Plus
2L 23513712 2L 18651755..18651986 478..709 1160 100 Plus
2L 23513712 2L 18651170..18651362 16..208 965 100 Plus
2L 23513712 2L 18652038..18652207 709..878 850 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:40 has no hits.

BS08856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:08 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10391-PA 618..1479 17..878 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:51 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10391-PA 618..1479 17..878 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:20 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 684..1548 12..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:59 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 684..1548 12..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:59 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18651168..18651361 12..207 98 <- Plus
2L 18651426..18651695 208..477 100 <- Plus
2L 18651755..18651985 478..708 100 <- Plus
2L 18652038..18652207 709..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:20 Download gff for BS08856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18651168..18651361 12..207 98 <- Plus
arm_2L 18651426..18651695 208..477 100 <- Plus
arm_2L 18651755..18651985 478..708 100 <- Plus
arm_2L 18652038..18652207 709..878 100   Plus

BS08856.5prime Sequence

835 bp (806 high quality bases) assembled on 2006-01-18

> BS08856.5prime
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAGACAAACTGTTGTCCATCAAACGCTTG

BS08856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10391-PA 1479 Cyp310a1-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp310a1-RA 1658 CG10391-RA 67..885 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18652457..18652944 504..17 2440 100 Minus
2L 23513712 2L 18652038..18652219 803..622 910 100 Minus
2L 23513712 2L 18652281..18652397 621..505 585 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:59:28 has no hits.

BS08856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:09 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10391-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:55:52 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10391-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:38 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 63..885 9..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:38 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 63..885 9..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:38 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18651954..18651985 804..835 100 <- Minus
2L 18652038..18652219 622..803 100 <- Minus
2L 18652281..18652397 505..621 100 <- Minus
2L 18652457..18652948 9..504 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:38 Download gff for BS08856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18651954..18651985 804..835 100 <- Minus
arm_2L 18652038..18652219 622..803 100 <- Minus
arm_2L 18652281..18652397 505..621 100 <- Minus
arm_2L 18652457..18652948 9..504 99   Minus

BS08856.complete Sequence

1511 bp (1511 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636301

> BS08856.complete
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAGACAAACTGTTGTCCATCAAACGCTTGGCCAAAGTTGCCGAG
GATCTCTTGAAAGTATCTCTAGATGCAGTAGCTTCAACTGTAACCTTCAC
TCTCTTGGAAATCCTGCAAGAACCTTTAATAGTGGAAAAACTGAGAGCGG
AAATAAAGGAGCTAAGCAATGAAAATGGTCAGCTCAAATTTGAAGAGCTT
AATGGTCTTAGGTATATGGACATGTGCTTGAAAGAAACTCTTCGCAAATA
TCCACCTCTACCCATTATTGAACGTGTTTGCCGCAAAAGTTATTCGCTAC
CCAATTCAAAATTCACAATTGATGAGGGAAAGACTTTGATGGTGCCTCTA
CTGGCTATGCACCGAGATGAAAAATACTTCAGTGAGCCTATGAAATACAA
GCCACTTCGATTTCTGCAAACTGCCAACGATGTGGGCCAATGTGAAGACA
AGACAAAGAGCAATGTTTTTATAGGATTTGGCATTGGGGGATCGCAGTGT
GTGGGACAGAACTTTGCAAAGTTGGTAATTAAAGTGGCCCTGATCAAATT
ACTCCAAAACTTTCATTTGGAATTGGATGCGAACCAGGTGAAGACCCTTA
AAGTTTCCCACCGGCCAGCTCCTTTTATACACACAAAGGATGGGCTGAAA
GTCAAATTGAAGAGACGCGAAATAAACACGAAATTTTACAGCTAAAAGCT
TTCTAGACCAT

BS08856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp310a1-RA 1479 CG10391-PA 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp310a1-RA 1658 CG10391-RA 67..1546 17..1496 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18652457..18652944 504..17 2440 100 Minus
2L 23513712 2L 18651425..18651697 1305..1033 1365 100 Minus
2L 23513712 2L 18651755..18651986 1034..803 1160 100 Minus
2L 23513712 2L 18651170..18651362 1496..1304 965 100 Minus
2L 23513712 2L 18652038..18652219 803..622 910 100 Minus
2L 23513712 2L 18652281..18652397 621..505 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:34 has no hits.

BS08856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:51 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 1..1479 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:57 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 37..1522 9..1500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:47 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 67..1543 17..1493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:51 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 37..1522 9..1500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:54 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp310a1-RA 67..1543 17..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:54 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18652457..18652944 17..504 100   Minus
2L 18651173..18651361 1305..1493 100 <- Minus
2L 18651426..18651695 1035..1304 100 <- Minus
2L 18651755..18651985 804..1034 100 <- Minus
2L 18652038..18652219 622..803 100 <- Minus
2L 18652281..18652397 505..621 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:47 Download gff for BS08856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18651173..18651361 1305..1493 100 <- Minus
arm_2L 18651426..18651695 1035..1304 100 <- Minus
arm_2L 18651755..18651985 804..1034 100 <- Minus
arm_2L 18652038..18652219 622..803 100 <- Minus
arm_2L 18652281..18652397 505..621 100 <- Minus
arm_2L 18652457..18652944 17..504 100   Minus

BS08856.pep Sequence

Translation from 16 to 1494

> BS08856.pep
MWLLLPILLYSAVFLSVRHIYSHWRRRGFPSEKAGITWSFLQKAYRREFR
HVEAICEAYQSGKDRLLGIYCFFRPVLLVRNVELAQTILQQSNGHFSELK
WDYISGYRRFNLLEKLAPMFGTKRLSEMFGQVQKVGDHLIHHLLDRQGQG
CPQEVDIQQKLRVYSVNIIANLIYGLDINNFEHEDHILTSYLSHSQASIQ
SFTLGRLPQKSSYTYRLRDLIKQSVELREDHGLIRKDILQLLVRFRNGNE
VSGDKWQLEPINDADKLLSIKRLAKVAEDLLKVSLDAVASTVTFTLLEIL
QEPLIVEKLRAEIKELSNENGQLKFEELNGLRYMDMCLKETLRKYPPLPI
IERVCRKSYSLPNSKFTIDEGKTLMVPLLAMHRDEKYFSEPMKYKPLRFL
QTANDVGQCEDKTKSNVFIGFGIGGSQCVGQNFAKLVIKVALIKLLQNFH
LELDANQVKTLKVSHRPAPFIHTKDGLKVKLKRREINTKFYS*

BS08856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp310a1-PA 492 CG10391-PA 1..492 1..492 2542 100 Plus
Cyp6d4-PA 515 CG12800-PA 5..510 3..484 659 30 Plus
Cyp6d5-PA 508 CG3050-PA 4..478 3..453 639 29.6 Plus
Cyp6d2-PA 512 CG4373-PA 1..512 1..485 589 28.4 Plus
Cyp6a22-PC 499 CG10240-PC 7..464 5..453 431 26.3 Plus