Clone Sequence Records
BS08859.3prime Sequence
924 bp (832 high quality bases) assembled on 2006-01-18
> BS08859.3prime
ATGGTCTAGAAAGCTTCTATTTGACTTTGGAGCGGAAGCCCTTCGATACG
AGGGGAGCCACCTCTGAGGGATCGCGTCCCCGCGTTTCCGGCAGATAGAA
TTTCGTAAGCAAGAAGAGCAGCACGCAGGTAATGGAGAAGGGCAGGAAGA
CGAAGGCGCCCCATGCGTTCTGCAGCAGGGGGAACGATATGCCAATTATG
AAATTGCACGTCCACGAGGCCAAGCTGCCCATCGACATGGCCACGGAGCG
GGGAGCCACCTCGAACAGTTCTGCGCCAATAAAGTAGGGAATGGGGCCCA
GCCCGAATTGGTAGAAGAATATGTAACCCATGATGCAGACGATGCAGGCA
ATGGCAAACCAGCTAACTTGGTCAATATAAAACAACACAAAGGCTATGGT
GAACAGAAAAACGGAGCAAAGAGCACAGGAGAACATCATCAAGGTTCGTC
TATTGCACTTGGCCATTAGCCAAGGTCCCAACAAAGAGACAGCTAGATTC
AGGCAACCAGCGCCCAAATTGGCCCATTGAGCATCCACTGTGGACAGTCC
GGCCTTTTCGAAGATGCTGACCGAGTAATAAAATATCGCATTAATGCCCG
ACAACTGCTGACCACCATGGAAGCAGCAGACAATGATCAGGGGCAATGTG
AGACGAGGATCGCGAAGCACATCGCAAAAGCTGCTCGTCTGCACCTTGGC
ATTAGACTCTGCCTCCATCTCGGCCATTTCTTGGGCGATAAGCTCCTCCG
CATCCTTGCCCCGCAGCCGTTGAAGCTCCCGCTTGGCAGCTGCGCGATTT
CCTTTAACAATATACAGGAACTTGGGACTCTCGGGGAAGAGGTATGATGG
CAGGTAGCAGACCAGGATAAGGAACATGTAGGCAGTCAGGGCGTAGTGCC
AGAGATCCTCAGTACCGAAGACAT
BS08859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8714-PA | 1524 | sut1-RA | 617..1524 | 924..17 | 4515 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 934..1841 | 924..17 | 4525 | 99.9 | Minus |
CG7882-RC | 2266 | CG7882-RC | 1435..1751 | 364..48 | 430 | 76.5 | Minus |
CG7882-RA | 1802 | CG7882-RA | 1337..1653 | 364..48 | 430 | 76.5 | Minus |
CG7882-RC | 2266 | CG7882-RC | 1159..1258 | 640..541 | 200 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085304..8085641 | 924..587 | 1675 | 99.7 | Minus |
2R | 25286936 | 2R | 8086323..8086580 | 274..17 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 8085699..8085913 | 587..373 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 8085982..8086084 | 373..271 | 515 | 100 | Minus |
2R | 25286936 | 2R | 5959443..5959668 | 273..48 | 320 | 76.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:56:15 has no hits.
BS08859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:14 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-PA | 617..1524 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:00 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8714-PA | 617..1524 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:21 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 934..1841 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:22 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 934..1841 | 17..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:22 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8085304..8085641 | 587..924 | 99 | -> | Minus |
2R | 8085700..8085912 | 374..586 | 100 | -> | Minus |
2R | 8085982..8086084 | 271..373 | 100 | -> | Minus |
2R | 8086327..8086580 | 17..270 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:21 Download gff for
BS08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3973487..3973589 | 271..373 | 100 | -> | Minus |
arm_2R | 3972809..3973146 | 587..924 | 99 | -> | Minus |
arm_2R | 3973205..3973417 | 374..586 | 100 | -> | Minus |
arm_2R | 3973832..3974085 | 17..270 | 100 | | Minus |
BS08859.5prime Sequence
967 bp (841 high quality bases) assembled on 2006-01-18
> BS08859.5prime
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCCTGGTGGTCAGC
AGTTGTCGGGCATTAAT
BS08859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8714-PA | 1524 | sut1-RA | 1..951 | 17..967 | 4730 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 318..1268 | 17..967 | 4740 | 99.9 | Plus |
slv-RC | 1247 | CG8717-RC | 1..65 | 81..17 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085044..8085638 | 373..967 | 2960 | 99.8 | Plus |
2R | 25286936 | 2R | 8084690..8084853 | 213..376 | 820 | 100 | Plus |
2R | 25286936 | 2R | 8084528..8084639 | 107..218 | 545 | 99.1 | Plus |
2R | 25286936 | 2R | 8083293..8083385 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:05 has no hits.
BS08859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:15 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:01 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8714-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:54 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 311..1268 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:05 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 311..1268 | 9..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:05 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8083286..8083385 | 9..109 | 96 | -> | Plus |
2R | 8084531..8084635 | 110..214 | 100 | -> | Plus |
2R | 8084692..8084852 | 215..375 | 100 | -> | Plus |
2R | 8085047..8085638 | 376..967 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:54 Download gff for
BS08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3970791..3970890 | 9..109 | 96 | -> | Plus |
arm_2R | 3972036..3972140 | 110..214 | 100 | -> | Plus |
arm_2R | 3972197..3972357 | 215..375 | 100 | -> | Plus |
arm_2R | 3972552..3973143 | 376..967 | 99 | | Plus |
BS08859.complete Sequence
1556 bp (1556 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636302
> BS08859.complete
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCATGGTGGTCAGC
AGTTGTCGGGCATTAATGCGATATTTTATTACTCGGTCAGCATCTTCGAA
AAGGCCGGACTGTCCACAGTGGATGCTCAATGGGCCAATTTGGGCGCTGG
TTGCCTGAATCTAGCTGTCTCTTTGTTGGGACCTTGGCTAATGGCCAAGT
GCAATAGACGAACCTTGATGATGTTCTCCTGTGCTCTTTGCTCCGTTTTT
CTGTTCACCATAGCCTTTGTGTTGTTTTATATTGACCAAGTTAGCTGGTT
TGCCATTGCCTGCATCGTCTGCATCATGGGTTACATATTCTTCTACCAAT
TCGGGCTGGGCCCCATTCCCTACTTTATTGGCGCAGAACTGTTCGAGGTG
GCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTGGCCTCGTGGACGTG
CAATTTCATAATTGGCATATCGTTCCCCCTGCTGCAGAACGCATGGGGCG
CCTTCGTCTTCCTGCCCTTCTCCATTACCTGCGTGCTGCTCTTCTTGCTT
ACGAAATTCTATCTGCCGGAAACGCGGGGACGCGATCCCTCAGAGGTGGC
TCCCCTCGTATCGAAGGGCTTCCGCTCCAAAGTCAAATAGAAGCTTTCTA
GACCAT
BS08859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 1524 | CG8714-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
CG7882-RC | 1551 | CG7882-PC | 1183..1499 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RA | 1551 | CG7882-PA | 1183..1499 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RC | 1551 | CG7882-PC | 907..1006 | 917..1016 | 200 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 318..1841 | 17..1540 | 7620 | 100 | Plus |
CG7882-RC | 2266 | CG7882-RC | 1435..1751 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RA | 1802 | CG7882-RA | 1337..1653 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RC | 2266 | CG7882-RC | 1159..1258 | 917..1016 | 200 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085044..8085641 | 373..970 | 2990 | 100 | Plus |
2R | 25286936 | 2R | 8086323..8086580 | 1283..1540 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 8085699..8085913 | 970..1184 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 8084690..8084853 | 213..376 | 820 | 100 | Plus |
2R | 25286936 | 2R | 8084528..8084639 | 107..218 | 545 | 99.1 | Plus |
2R | 25286936 | 2R | 8085982..8086084 | 1184..1286 | 515 | 100 | Plus |
2R | 25286936 | 2R | 8083293..8083385 | 17..109 | 465 | 100 | Plus |
2R | 25286936 | 2R | 5959443..5959668 | 1284..1509 | 320 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:01:36 has no hits.
BS08859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:39 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 1..1524 | 17..1540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:41 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 309..1839 | 9..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:32 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 318..1835 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:40 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 309..1839 | 9..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:39 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 318..1835 | 17..1534 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:39 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8083293..8083385 | 17..109 | 100 | -> | Plus |
2R | 8084531..8084635 | 110..214 | 100 | -> | Plus |
2R | 8084692..8084852 | 215..375 | 100 | -> | Plus |
2R | 8085047..8085641 | 376..970 | 100 | -> | Plus |
2R | 8085700..8085912 | 971..1183 | 100 | -> | Plus |
2R | 8085982..8086084 | 1184..1286 | 100 | -> | Plus |
2R | 8086327..8086574 | 1287..1534 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:32 Download gff for
BS08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3970798..3970890 | 17..109 | 100 | -> | Plus |
arm_2R | 3972036..3972140 | 110..214 | 100 | -> | Plus |
arm_2R | 3972197..3972357 | 215..375 | 100 | -> | Plus |
arm_2R | 3972552..3973146 | 376..970 | 100 | -> | Plus |
arm_2R | 3973205..3973417 | 971..1183 | 100 | -> | Plus |
arm_2R | 3973487..3973589 | 1184..1286 | 100 | -> | Plus |
arm_2R | 3973832..3974079 | 1287..1534 | 100 | | Plus |
BS08859.pep Sequence
Translation from 16 to 1539
> BS08859.pep
MATKSQPAEAQQLYPQPNRVELLSAQTDPSQKPRWGNLLLLVALATTFGG
AVSTGYCIGVINAPSKLMKVWCNQTLHDTYGSNLSAGGLDLLWSCVVSVF
LVGGAIGSLGGAGAANKFGRKACFLICGALFTVGAVLFFFCRAASSVEML
VIGRFVVGLASGLVTATLPMYLSEVAPMALRGTLGVFIAVGVTGGVVVGQ
VCSLANVFGTEDLWHYALTAYMFLILVCYLPSYLFPESPKFLYIVKGNRA
AAKRELQRLRGKDAEELIAQEMAEMEAESNAKVQTSSFCDVLRDPRLTLP
LIIVCCFHGGQQLSGINAIFYYSVSIFEKAGLSTVDAQWANLGAGCLNLA
VSLLGPWLMAKCNRRTLMMFSCALCSVFLFTIAFVLFYIDQVSWFAIACI
VCIMGYIFFYQFGLGPIPYFIGAELFEVAPRSVAMSMGSLASWTCNFIIG
ISFPLLQNAWGAFVFLPFSITCVLLFLLTKFYLPETRGRDPSEVAPLVSK
GFRSKVK*
BS08859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-PA | 507 | CG8714-PA | 1..507 | 1..507 | 2633 | 100 | Plus |
CG7882-PC | 516 | CG7882-PC | 32..508 | 31..506 | 1474 | 58.5 | Plus |
CG7882-PA | 516 | CG7882-PA | 32..508 | 31..506 | 1474 | 58.5 | Plus |
sut2-PA | 491 | CG17975-PA | 9..490 | 29..506 | 1175 | 46.9 | Plus |
sut3-PA | 476 | CG17976-PA | 5..476 | 32..507 | 992 | 42.2 | Plus |