Clone BS08859 Report

Search the DGRC for BS08859

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:59
Vector:pDNR-Dual
Associated Gene/Transcriptsut1-RA
Protein status:BS08859.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08859.3prime Sequence

924 bp (832 high quality bases) assembled on 2006-01-18

> BS08859.3prime
ATGGTCTAGAAAGCTTCTATTTGACTTTGGAGCGGAAGCCCTTCGATACG
AGGGGAGCCACCTCTGAGGGATCGCGTCCCCGCGTTTCCGGCAGATAGAA
TTTCGTAAGCAAGAAGAGCAGCACGCAGGTAATGGAGAAGGGCAGGAAGA
CGAAGGCGCCCCATGCGTTCTGCAGCAGGGGGAACGATATGCCAATTATG
AAATTGCACGTCCACGAGGCCAAGCTGCCCATCGACATGGCCACGGAGCG
GGGAGCCACCTCGAACAGTTCTGCGCCAATAAAGTAGGGAATGGGGCCCA
GCCCGAATTGGTAGAAGAATATGTAACCCATGATGCAGACGATGCAGGCA
ATGGCAAACCAGCTAACTTGGTCAATATAAAACAACACAAAGGCTATGGT
GAACAGAAAAACGGAGCAAAGAGCACAGGAGAACATCATCAAGGTTCGTC
TATTGCACTTGGCCATTAGCCAAGGTCCCAACAAAGAGACAGCTAGATTC
AGGCAACCAGCGCCCAAATTGGCCCATTGAGCATCCACTGTGGACAGTCC
GGCCTTTTCGAAGATGCTGACCGAGTAATAAAATATCGCATTAATGCCCG
ACAACTGCTGACCACCATGGAAGCAGCAGACAATGATCAGGGGCAATGTG
AGACGAGGATCGCGAAGCACATCGCAAAAGCTGCTCGTCTGCACCTTGGC
ATTAGACTCTGCCTCCATCTCGGCCATTTCTTGGGCGATAAGCTCCTCCG
CATCCTTGCCCCGCAGCCGTTGAAGCTCCCGCTTGGCAGCTGCGCGATTT
CCTTTAACAATATACAGGAACTTGGGACTCTCGGGGAAGAGGTATGATGG
CAGGTAGCAGACCAGGATAAGGAACATGTAGGCAGTCAGGGCGTAGTGCC
AGAGATCCTCAGTACCGAAGACAT

BS08859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8714-PA 1524 sut1-RA 617..1524 924..17 4515 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 934..1841 924..17 4525 99.9 Minus
CG7882-RC 2266 CG7882-RC 1435..1751 364..48 430 76.5 Minus
CG7882-RA 1802 CG7882-RA 1337..1653 364..48 430 76.5 Minus
CG7882-RC 2266 CG7882-RC 1159..1258 640..541 200 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085304..8085641 924..587 1675 99.7 Minus
2R 25286936 2R 8086323..8086580 274..17 1290 100 Minus
2R 25286936 2R 8085699..8085913 587..373 1075 100 Minus
2R 25286936 2R 8085982..8086084 373..271 515 100 Minus
2R 25286936 2R 5959443..5959668 273..48 320 76.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:56:15 has no hits.

BS08859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:14 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-PA 617..1524 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:00 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8714-PA 617..1524 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:21 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 934..1841 17..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:22 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 934..1841 17..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:22 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8085304..8085641 587..924 99 -> Minus
2R 8085700..8085912 374..586 100 -> Minus
2R 8085982..8086084 271..373 100 -> Minus
2R 8086327..8086580 17..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:21 Download gff for BS08859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3973487..3973589 271..373 100 -> Minus
arm_2R 3972809..3973146 587..924 99 -> Minus
arm_2R 3973205..3973417 374..586 100 -> Minus
arm_2R 3973832..3974085 17..270 100   Minus

BS08859.5prime Sequence

967 bp (841 high quality bases) assembled on 2006-01-18

> BS08859.5prime
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCCTGGTGGTCAGC
AGTTGTCGGGCATTAAT

BS08859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8714-PA 1524 sut1-RA 1..951 17..967 4730 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 318..1268 17..967 4740 99.9 Plus
slv-RC 1247 CG8717-RC 1..65 81..17 325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085044..8085638 373..967 2960 99.8 Plus
2R 25286936 2R 8084690..8084853 213..376 820 100 Plus
2R 25286936 2R 8084528..8084639 107..218 545 99.1 Plus
2R 25286936 2R 8083293..8083385 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:05 has no hits.

BS08859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:15 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-PA 1..951 17..967 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:01 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8714-PA 1..951 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:54 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 311..1268 9..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:05 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 311..1268 9..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:05 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8083286..8083385 9..109 96 -> Plus
2R 8084531..8084635 110..214 100 -> Plus
2R 8084692..8084852 215..375 100 -> Plus
2R 8085047..8085638 376..967 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:54 Download gff for BS08859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3970791..3970890 9..109 96 -> Plus
arm_2R 3972036..3972140 110..214 100 -> Plus
arm_2R 3972197..3972357 215..375 100 -> Plus
arm_2R 3972552..3973143 376..967 99   Plus

BS08859.complete Sequence

1556 bp (1556 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636302

> BS08859.complete
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCATGGTGGTCAGC
AGTTGTCGGGCATTAATGCGATATTTTATTACTCGGTCAGCATCTTCGAA
AAGGCCGGACTGTCCACAGTGGATGCTCAATGGGCCAATTTGGGCGCTGG
TTGCCTGAATCTAGCTGTCTCTTTGTTGGGACCTTGGCTAATGGCCAAGT
GCAATAGACGAACCTTGATGATGTTCTCCTGTGCTCTTTGCTCCGTTTTT
CTGTTCACCATAGCCTTTGTGTTGTTTTATATTGACCAAGTTAGCTGGTT
TGCCATTGCCTGCATCGTCTGCATCATGGGTTACATATTCTTCTACCAAT
TCGGGCTGGGCCCCATTCCCTACTTTATTGGCGCAGAACTGTTCGAGGTG
GCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTGGCCTCGTGGACGTG
CAATTTCATAATTGGCATATCGTTCCCCCTGCTGCAGAACGCATGGGGCG
CCTTCGTCTTCCTGCCCTTCTCCATTACCTGCGTGCTGCTCTTCTTGCTT
ACGAAATTCTATCTGCCGGAAACGCGGGGACGCGATCCCTCAGAGGTGGC
TCCCCTCGTATCGAAGGGCTTCCGCTCCAAAGTCAAATAGAAGCTTTCTA
GACCAT

BS08859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 1524 CG8714-PA 1..1524 17..1540 7620 100 Plus
CG7882-RC 1551 CG7882-PC 1183..1499 1193..1509 430 75.7 Plus
CG7882-RA 1551 CG7882-PA 1183..1499 1193..1509 430 75.7 Plus
CG7882-RC 1551 CG7882-PC 907..1006 917..1016 200 80 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 318..1841 17..1540 7620 100 Plus
CG7882-RC 2266 CG7882-RC 1435..1751 1193..1509 430 75.7 Plus
CG7882-RA 1802 CG7882-RA 1337..1653 1193..1509 430 75.7 Plus
CG7882-RC 2266 CG7882-RC 1159..1258 917..1016 200 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085044..8085641 373..970 2990 100 Plus
2R 25286936 2R 8086323..8086580 1283..1540 1290 100 Plus
2R 25286936 2R 8085699..8085913 970..1184 1075 100 Plus
2R 25286936 2R 8084690..8084853 213..376 820 100 Plus
2R 25286936 2R 8084528..8084639 107..218 545 99.1 Plus
2R 25286936 2R 8085982..8086084 1184..1286 515 100 Plus
2R 25286936 2R 8083293..8083385 17..109 465 100 Plus
2R 25286936 2R 5959443..5959668 1284..1509 320 76.1 Plus
Blast to na_te.dros performed on 2014-11-27 17:01:36 has no hits.

BS08859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:39 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 1..1524 17..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:41 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 309..1839 9..1540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:32 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 318..1835 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:40 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 309..1839 9..1540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:39 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 318..1835 17..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:39 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8083293..8083385 17..109 100 -> Plus
2R 8084531..8084635 110..214 100 -> Plus
2R 8084692..8084852 215..375 100 -> Plus
2R 8085047..8085641 376..970 100 -> Plus
2R 8085700..8085912 971..1183 100 -> Plus
2R 8085982..8086084 1184..1286 100 -> Plus
2R 8086327..8086574 1287..1534 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:32 Download gff for BS08859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3970798..3970890 17..109 100 -> Plus
arm_2R 3972036..3972140 110..214 100 -> Plus
arm_2R 3972197..3972357 215..375 100 -> Plus
arm_2R 3972552..3973146 376..970 100 -> Plus
arm_2R 3973205..3973417 971..1183 100 -> Plus
arm_2R 3973487..3973589 1184..1286 100 -> Plus
arm_2R 3973832..3974079 1287..1534 100   Plus

BS08859.pep Sequence

Translation from 16 to 1539

> BS08859.pep
MATKSQPAEAQQLYPQPNRVELLSAQTDPSQKPRWGNLLLLVALATTFGG
AVSTGYCIGVINAPSKLMKVWCNQTLHDTYGSNLSAGGLDLLWSCVVSVF
LVGGAIGSLGGAGAANKFGRKACFLICGALFTVGAVLFFFCRAASSVEML
VIGRFVVGLASGLVTATLPMYLSEVAPMALRGTLGVFIAVGVTGGVVVGQ
VCSLANVFGTEDLWHYALTAYMFLILVCYLPSYLFPESPKFLYIVKGNRA
AAKRELQRLRGKDAEELIAQEMAEMEAESNAKVQTSSFCDVLRDPRLTLP
LIIVCCFHGGQQLSGINAIFYYSVSIFEKAGLSTVDAQWANLGAGCLNLA
VSLLGPWLMAKCNRRTLMMFSCALCSVFLFTIAFVLFYIDQVSWFAIACI
VCIMGYIFFYQFGLGPIPYFIGAELFEVAPRSVAMSMGSLASWTCNFIIG
ISFPLLQNAWGAFVFLPFSITCVLLFLLTKFYLPETRGRDPSEVAPLVSK
GFRSKVK*

BS08859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-PA 507 CG8714-PA 1..507 1..507 2633 100 Plus
CG7882-PC 516 CG7882-PC 32..508 31..506 1474 58.5 Plus
CG7882-PA 516 CG7882-PA 32..508 31..506 1474 58.5 Plus
sut2-PA 491 CG17975-PA 9..490 29..506 1175 46.9 Plus
sut3-PA 476 CG17976-PA 5..476 32..507 992 42.2 Plus