Clone Sequence Records
BS08862.3prime Sequence
920 bp (862 high quality bases) assembled on 2006-01-18
> BS08862.3prime
ATGGTCTAGAAAGCTTTTACTCCTTGGGCAACTTGTCAAGATCAATGCCG
TCATCAATGGACACCCCTGTCGCCTGGCTCAGCTCCAGCATTTCCTTAAC
CTGGTGAGCAACCTCCCTGTCCACAACTTCTCCACCTCGATTCATGGTCC
GTTCGATGATTTCCTCGTCAGACAGTTGCAAGGCGAACATCTCCTCGGGC
GAGATGTCCAAGGGATCCACCAAACTCATGAGGAAACTGGCCGATATGGA
TAAGCTGTACGGCAGGAAACGCACGTACTCCTTCAGAAGCTCACCGCGAC
TTAGGAAATCCGGAACCTCCTCCTTGGCGTGCTCCCTATAGCTATTATGA
AGCGCCAAGGTGTATTCACAGAAGATGGCCTCGAAGTTTGGATCGCGTAC
CTCGGCAAAAATGGACACGGCTAGAAAGACGTTGAGATCGACCATGGGAG
AGGAGACTCGCAATGTCTGGTAGTCGAACATCATGATCTCCTGCGGCTCC
TCCTTGTCATCGTACCTGTACGCCACATTATTCCTCACATAATCGCCGTG
GCACAGGGTGGCCAGTGGCTCCCTGGGCGCCACCCGTTGCCTACCGTATT
GCGAATAGTCCGAGATCATGAAACAGAACTTCTTAACAAACTCCTCGTCG
ATCTGTGGCTGATAGGTGGCCACCGCCTTGGCCGCTCGATCGATGCTCGT
TTTCATGGTGAGCTTCCATTCCGGATGAATGTTATCGTTGGCATAGCGAG
ATTCCTTCAGATTGTCAGTCAGCTGGGCAAACTTTTCCGGGTTCTTGTGC
TTCATGGCGTACGCAAAGCCATGGAACCTTCCCAGGTAACTCACGGCAAT
CATGGCGTGCTGCAGACTCAGACCCACACGATCCTTGGTGACCCGCCATC
CCTGCTCCGCGAAATTCTCC
BS08862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3767-PA | 1320 | JhI-26-RA | 417..1320 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 469..1372 | 920..17 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16290131..16290751 | 920..300 | 3105 | 100 | Minus |
2R | 25286936 | 2R | 16290926..16291210 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:06:02 has no hits.
BS08862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:18 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 417..1320 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:06 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 417..1320 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:36 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 469..1372 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:52 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 469..1372 | 17..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:52 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16290131..16290751 | 300..920 | 100 | -> | Minus |
2R | 16290928..16291210 | 17..299 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:36 Download gff for
BS08862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12177636..12178256 | 300..920 | 100 | -> | Minus |
arm_2R | 12178433..12178715 | 17..299 | 100 | | Minus |
BS08862.5prime Sequence
976 bp (840 high quality bases) assembled on 2006-01-18
> BS08862.5prime
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGAACAG
GAGGAGCCGCANGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGAATCTCACGTCTTTCTAGCCGTGTTCATTTTTGCCC
GAGGTACGCCGATCCAAACTTCGAGG
BS08862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3767-PA | 1320 | JhI-26-RA | 1..899 | 17..915 | 4426 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 49..1010 | 13..976 | 4654 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16289950..16290672 | 252..976 | 3394 | 98.5 | Plus |
2R | 25286936 | 2R | 16289368..16289608 | 13..253 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:10:18 has no hits.
BS08862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:19 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 1..958 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:08 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 1..958 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:39 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 41..1010 | 3..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:38 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 41..1010 | 3..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:38 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16289360..16289608 | 3..253 | 98 | -> | Plus |
2R | 16289952..16290672 | 254..976 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:39 Download gff for
BS08862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12176865..12177113 | 3..253 | 98 | -> | Plus |
arm_2R | 12177457..12178177 | 254..976 | 98 | | Plus |
BS08862.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636303
> BS08862.complete
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCAGGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGCCATCTTCTGTGAATACACCTTGGCG
CTTCATAATAGCTATAGGGAGCACGCCAAGGAGGAGGTTCCGGATTTCCT
AAGTCGCGGTGAGCTTCTGAAGGAGTACGTGCGTTTCCTGCCGTACAGCT
TATCCATATCGGCCAGTTTCCTCATGAGTTTGGTGGATCCCTTGGACATC
TCGCCCGAGGAGATGTTCGCCTTGCAACTGTCTGACGAGGAAATCATCGA
ACGGACCATGAATCGAGGTGGAGAAGTTGTGGACAGGGAGGTTGCTCACC
AGGTTAAGGAAATGCTGGAGCTGAGCCAGGCGACAGGGGTGTCCATTGAT
GACGGCATTGATCTTGACAAGTTGCCCAAGGAGTAAAAGCTTTCTAGACC
AT
BS08862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1320 | CG3767-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 49..1372 | 13..1336 | 6605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16289950..16290751 | 252..1053 | 4010 | 100 | Plus |
2R | 25286936 | 2R | 16290926..16291210 | 1052..1336 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 16289368..16289608 | 13..253 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:49:53 has no hits.
BS08862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:30 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:36 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 36..1367 | 3..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:17 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 53..1370 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:30 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 36..1367 | 3..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:39 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 53..1370 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:39 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16289372..16289608 | 17..253 | 100 | -> | Plus |
2R | 16289952..16290751 | 254..1053 | 100 | -> | Plus |
2R | 16290928..16291208 | 1054..1334 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:17 Download gff for
BS08862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12176877..12177113 | 17..253 | 100 | -> | Plus |
arm_2R | 12177457..12178256 | 254..1053 | 100 | -> | Plus |
arm_2R | 12178433..12178713 | 1054..1334 | 100 | | Plus |
BS08862.pep Sequence
Translation from 16 to 1335
> BS08862.pep
MEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVGDIDIDVIGHS
EAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYESIQFGPLFTN
EINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILENFAEQGWRVT
KDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLTDNLKESRYAN
DNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFMISDYSQYGRQ
RVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQTLRVSSPMVD
LNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEEVPDFLSRGEL
LKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSDEEIIERTMNR
GGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKE*
BS08862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-PA | 439 | CG3767-PA | 1..439 | 1..439 | 2292 | 100 | Plus |
CG14314-PA | 438 | CG14314-PA | 64..408 | 59..404 | 236 | 24.2 | Plus |
CG2004-PG | 425 | CG2004-PG | 66..362 | 68..357 | 221 | 26.1 | Plus |
CG2004-PF | 425 | CG2004-PF | 66..362 | 68..357 | 221 | 26.1 | Plus |
CG2004-PD | 425 | CG2004-PD | 66..362 | 68..357 | 221 | 26.1 | Plus |