Clone BS08862 Report

Search the DGRC for BS08862

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptJhI-26-RA
Protein status:BS08862.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08862.3prime Sequence

920 bp (862 high quality bases) assembled on 2006-01-18

> BS08862.3prime
ATGGTCTAGAAAGCTTTTACTCCTTGGGCAACTTGTCAAGATCAATGCCG
TCATCAATGGACACCCCTGTCGCCTGGCTCAGCTCCAGCATTTCCTTAAC
CTGGTGAGCAACCTCCCTGTCCACAACTTCTCCACCTCGATTCATGGTCC
GTTCGATGATTTCCTCGTCAGACAGTTGCAAGGCGAACATCTCCTCGGGC
GAGATGTCCAAGGGATCCACCAAACTCATGAGGAAACTGGCCGATATGGA
TAAGCTGTACGGCAGGAAACGCACGTACTCCTTCAGAAGCTCACCGCGAC
TTAGGAAATCCGGAACCTCCTCCTTGGCGTGCTCCCTATAGCTATTATGA
AGCGCCAAGGTGTATTCACAGAAGATGGCCTCGAAGTTTGGATCGCGTAC
CTCGGCAAAAATGGACACGGCTAGAAAGACGTTGAGATCGACCATGGGAG
AGGAGACTCGCAATGTCTGGTAGTCGAACATCATGATCTCCTGCGGCTCC
TCCTTGTCATCGTACCTGTACGCCACATTATTCCTCACATAATCGCCGTG
GCACAGGGTGGCCAGTGGCTCCCTGGGCGCCACCCGTTGCCTACCGTATT
GCGAATAGTCCGAGATCATGAAACAGAACTTCTTAACAAACTCCTCGTCG
ATCTGTGGCTGATAGGTGGCCACCGCCTTGGCCGCTCGATCGATGCTCGT
TTTCATGGTGAGCTTCCATTCCGGATGAATGTTATCGTTGGCATAGCGAG
ATTCCTTCAGATTGTCAGTCAGCTGGGCAAACTTTTCCGGGTTCTTGTGC
TTCATGGCGTACGCAAAGCCATGGAACCTTCCCAGGTAACTCACGGCAAT
CATGGCGTGCTGCAGACTCAGACCCACACGATCCTTGGTGACCCGCCATC
CCTGCTCCGCGAAATTCTCC

BS08862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3767-PA 1320 JhI-26-RA 417..1320 920..17 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 469..1372 920..17 4520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16290131..16290751 920..300 3105 100 Minus
2R 25286936 2R 16290926..16291210 301..17 1425 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:06:02 has no hits.

BS08862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:18 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 417..1320 17..920 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:06 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 417..1320 17..920 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:36 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 469..1372 17..920 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:52 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 469..1372 17..920 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:52 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16290131..16290751 300..920 100 -> Minus
2R 16290928..16291210 17..299 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:36 Download gff for BS08862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12177636..12178256 300..920 100 -> Minus
arm_2R 12178433..12178715 17..299 100   Minus

BS08862.5prime Sequence

976 bp (840 high quality bases) assembled on 2006-01-18

> BS08862.5prime
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGAACAG
GAGGAGCCGCANGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGAATCTCACGTCTTTCTAGCCGTGTTCATTTTTGCCC
GAGGTACGCCGATCCAAACTTCGAGG

BS08862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3767-PA 1320 JhI-26-RA 1..899 17..915 4426 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 49..1010 13..976 4654 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16289950..16290672 252..976 3394 98.5 Plus
2R 25286936 2R 16289368..16289608 13..253 1190 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 05:10:18 has no hits.

BS08862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:19 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 1..958 17..976 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:08 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 1..958 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:39 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 41..1010 3..976 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:38 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 41..1010 3..976 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:38 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16289360..16289608 3..253 98 -> Plus
2R 16289952..16290672 254..976 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:39 Download gff for BS08862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12176865..12177113 3..253 98 -> Plus
arm_2R 12177457..12178177 254..976 98   Plus

BS08862.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636303

> BS08862.complete
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCAGGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGCCATCTTCTGTGAATACACCTTGGCG
CTTCATAATAGCTATAGGGAGCACGCCAAGGAGGAGGTTCCGGATTTCCT
AAGTCGCGGTGAGCTTCTGAAGGAGTACGTGCGTTTCCTGCCGTACAGCT
TATCCATATCGGCCAGTTTCCTCATGAGTTTGGTGGATCCCTTGGACATC
TCGCCCGAGGAGATGTTCGCCTTGCAACTGTCTGACGAGGAAATCATCGA
ACGGACCATGAATCGAGGTGGAGAAGTTGTGGACAGGGAGGTTGCTCACC
AGGTTAAGGAAATGCTGGAGCTGAGCCAGGCGACAGGGGTGTCCATTGAT
GACGGCATTGATCTTGACAAGTTGCCCAAGGAGTAAAAGCTTTCTAGACC
AT

BS08862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1320 CG3767-PA 1..1320 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 49..1372 13..1336 6605 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16289950..16290751 252..1053 4010 100 Plus
2R 25286936 2R 16290926..16291210 1052..1336 1425 100 Plus
2R 25286936 2R 16289368..16289608 13..253 1190 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 12:49:53 has no hits.

BS08862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:30 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:36 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 36..1367 3..1336 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:17 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 53..1370 17..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:30 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 36..1367 3..1336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:39 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 53..1370 17..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:39 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16289372..16289608 17..253 100 -> Plus
2R 16289952..16290751 254..1053 100 -> Plus
2R 16290928..16291208 1054..1334 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:17 Download gff for BS08862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12176877..12177113 17..253 100 -> Plus
arm_2R 12177457..12178256 254..1053 100 -> Plus
arm_2R 12178433..12178713 1054..1334 100   Plus

BS08862.pep Sequence

Translation from 16 to 1335

> BS08862.pep
MEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVGDIDIDVIGHS
EAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYESIQFGPLFTN
EINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILENFAEQGWRVT
KDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLTDNLKESRYAN
DNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFMISDYSQYGRQ
RVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQTLRVSSPMVD
LNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEEVPDFLSRGEL
LKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSDEEIIERTMNR
GGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKE*

BS08862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-PA 439 CG3767-PA 1..439 1..439 2292 100 Plus
CG14314-PA 438 CG14314-PA 64..408 59..404 236 24.2 Plus
CG2004-PG 425 CG2004-PG 66..362 68..357 221 26.1 Plus
CG2004-PF 425 CG2004-PF 66..362 68..357 221 26.1 Plus
CG2004-PD 425 CG2004-PD 66..362 68..357 221 26.1 Plus