Clone Sequence Records
BS08866.3prime Sequence
864 bp (816 high quality bases) assembled on 2006-01-18
> BS08866.3prime
ATGGTCTAGAAAGCTTCTACACTGGGCCCATGCTGGCCTCGAACTTTCGA
CGACCTTGGATGTACCACATGGTTTCGTGGTAGGAGCGGGGCAGCACCTC
GGTAACCGTGTCCGGAGACGAGAAGGTGTAGTAGAACGTGTTGGTGGTCA
CCTGGCTGCCCGTTTGTGGGTCCATCACATCTGCAACGGTCATGATCTGC
ACGTAGTTCTCCTTGGTGTACACCACATAGGCGGTCATCTTGATGAAGCT
GTTCACGCTGACGGGCTTCTCGAAGCTGATGTCGGATATGTGCTCCAGCT
TGGGTCGCGTTTTGCAGTAGAGGTAGGCTGCTGCCCAGCTTATCTCCAGG
GCACTTCGCATGAGGAAGCCTCCGAAGACCCGGTTGTGGTGGTTCCTGTG
CTCCGGAAATGAGGGAATAGTGCTCATCTGGAAAGAGTCCTCCATCCAGC
GACAGTTTGGTGGCAGGATGCGCTTGTTGAGTTCCAAAGTGTTGGTGGGA
GTTGTCCTTTTGTACAGCTCGTACATAATTGTCTGCTCCGGGTCATTGGG
TTCCACCTTAAAGATGGACTGAGCACAGAGAATCTGACGTTTCTTCTTTC
TATCTGCGCCGCCAGCCAGAATCACTTTCTCTTCCTCGTTGGCCGGCTGT
AAGGGGTTCACAGGAGCCGCTCCGGTATTGTTAGCGTTTCTTGCTGCCAT
CAGGAACAAGGCACGGGTTAACTTTTGGTACCTCCCGCCAACCATCTGTT
CCAGCCACACTACCACCTCAATTGAACTGGTTCCCACCCAGGAAACGTGC
CCAGACAAACGGATATCTTGGGTGCCTGAAGCCAAGACATTGGTGAAATC
GATGCGGTCCACCA
BS08866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-PA | 1347 | CG1635-RA | 500..1347 | 864..17 | 4240 | 100 | Minus |
CG1638-PA | 1149 | CG1638-RA | 866..989 | 306..183 | 370 | 91.9 | Minus |
CG1638-PA | 1149 | CG1638-RA | 1021..1121 | 151..51 | 230 | 89.1 | Minus |
CG1638-PA | 1149 | CG1638-RA | 733..782 | 439..390 | 200 | 96 | Minus |
CG1638-PA | 1149 | CG1638-RA | 349..431 | 826..744 | 190 | 89.1 | Minus |
CG1638-PA | 1149 | CG1638-RA | 793..860 | 379..312 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-RA | 1548 | CG1635-RA | 580..1428 | 864..16 | 4245 | 100 | Minus |
CG1638-RB | 1567 | CG1638-RB | 531..1361 | 864..31 | 1640 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31589424..31590272 | 864..16 | 4245 | 100 | Minus |
3R | 32079331 | 3R | 31591280..31592110 | 864..31 | 1585 | 79.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:01:05 has no hits.
BS08866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:24 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-PA | 501..1347 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:14 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-PA | 501..1347 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:53 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 586..1433 | 16..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:59 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 581..1428 | 16..863 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:59 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31589425..31590272 | 16..863 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:53 Download gff for
BS08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27415147..27415994 | 16..863 | 100 | | Minus |
BS08866.5prime Sequence
819 bp (784 high quality bases) assembled on 2006-01-18
> BS08866.5prime
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTT
BS08866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-PA | 1347 | CG1635-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
CG1638-PA | 1149 | CG1638-RA | 349..431 | 554..636 | 190 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-RA | 1548 | CG1635-RA | 77..883 | 13..819 | 4020 | 99.9 | Plus |
CG1638-RB | 1567 | CG1638-RB | 200..834 | 185..819 | 835 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31589345..31589727 | 437..819 | 1915 | 100 | Plus |
3R | 32079331 | 3R | 31589043..31589286 | 194..437 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 31591201..31591583 | 437..819 | 580 | 76.8 | Plus |
3R | 32079331 | 3R | 31588749..31588860 | 13..124 | 545 | 99.1 | Plus |
3R | 32079331 | 3R | 31588920..31588990 | 124..194 | 355 | 100 | Plus |
3R | 32079331 | 3R | 31590898..31591056 | 194..352 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2015-02-10 23:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 252..299 | 132 | 75 | Plus |
BS08866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:26 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:15 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:35 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 73..888 | 2..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:12 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 68..883 | 2..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:12 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31588920..31588990 | 124..194 | 100 | -> | Plus |
3R | 31589044..31589286 | 195..437 | 100 | -> | Plus |
3R | 31588740..31588859 | 2..123 | 95 | -> | Plus |
3R | 31589346..31589727 | 438..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:35 Download gff for
BS08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27414462..27414581 | 2..123 | 95 | -> | Plus |
arm_3R | 27414642..27414712 | 124..194 | 100 | -> | Plus |
arm_3R | 27414766..27415008 | 195..437 | 100 | -> | Plus |
arm_3R | 27415068..27415449 | 438..819 | 100 | | Plus |
BS08866.complete Sequence
1379 bp (1379 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636304
> BS08866.complete
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTTTAAGGTGGAACCCAATGACCCGGAGCAGACA
ATTATGTACGAGCTGTACAAAAGGACAACTCCCACCAACACTTTGGAACT
CAACAAGCGCATCCTGCCACCAAACTGTCGCTGGATGGAGGACTCTTTCC
AGATGAGCACTATTCCCTCATTTCCGGAGCACAGGAACCACCACAACCGG
GTCTTCGGAGGCTTCCTCATGCGAAGTGCCCTGGAGATAAGCTGGGCAGC
AGCCTACCTCTACTGCAAAACGCGACCCAAGCTGGAGCACATATCCGACA
TCAGCTTCGAGAAGCCCGTCAGCGTGAACAGCTTCATCAAGATGACCGCC
TATGTGGTGTACACCAAGGAGAACTACGTGCAGATCATGACCGTTGCAGA
TGTGATGGACCCACAAACGGGCAGCCAGGTGACCACCAACACGTTCTACT
ACACCTTCTCGTCTCCGGACACGGTTACCGAGGTGCTGCCCCGCTCCTAC
CACGAAACCATGTGGTACATCCAAGGTCGTCGAAAGTTCGAGGCCAGCAT
GGGCCCAGTGTAGAAGCTTTCTAGACCAT
BS08866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-RA | 1347 | CG1635-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
CG1638-RB | 1332 | CG1638-PB | 163..1324 | 185..1349 | 1920 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-RA | 1548 | CG1635-RA | 77..1428 | 13..1364 | 6745 | 99.9 | Plus |
CG1638-RB | 1567 | CG1638-RB | 200..1361 | 185..1349 | 1920 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31589345..31590272 | 437..1364 | 4640 | 100 | Plus |
3R | 32079331 | 3R | 31591201..31592110 | 437..1349 | 1710 | 79.6 | Plus |
3R | 32079331 | 3R | 31589043..31589286 | 194..437 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 31588749..31588860 | 13..124 | 545 | 99.1 | Plus |
3R | 32079331 | 3R | 31588920..31588990 | 124..194 | 355 | 100 | Plus |
3R | 32079331 | 3R | 31590898..31591056 | 194..352 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2014-11-27 07:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 252..299 | 132 | 75 | Plus |
BS08866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:41 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:43 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 73..1433 | 2..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:54 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 86..1432 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:41 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 73..1433 | 2..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:48 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1635-RA | 81..1427 | 17..1363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:48 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31588753..31588859 | 17..123 | 100 | -> | Plus |
3R | 31588920..31588990 | 124..194 | 100 | -> | Plus |
3R | 31589044..31589286 | 195..437 | 100 | -> | Plus |
3R | 31589346..31590271 | 438..1363 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:54 Download gff for
BS08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27414642..27414712 | 124..194 | 100 | -> | Plus |
arm_3R | 27414766..27415008 | 195..437 | 100 | -> | Plus |
arm_3R | 27414475..27414581 | 17..123 | 100 | -> | Plus |
arm_3R | 27415068..27415993 | 438..1363 | 100 | | Plus |
BS08866.pep Sequence
Translation from 16 to 1362
> BS08866.pep
MMRSLIGAQKCWGLIRTRNFMELPTKQVPASFALFKRHYSPPTHIKQSAV
ANESGTMAEVKQGMMKRLGLEPGYNPLPKSREQLLKYQPKLEDLPPRAMQ
DSFTSAIIPLSTDRSLQDKYVTYLGNVRFGRLLEDMDLFAAWCCHKHLVL
PNLPEGVHLPYTFVTILVDRIDFTNVLASGTQDIRLSGHVSWVGTSSIEV
VVWLEQMVGGRYQKLTRALFLMAARNANNTGAAPVNPLQPANEEEKVILA
GGADRKKKRQILCAQSIFKVEPNDPEQTIMYELYKRTTPTNTLELNKRIL
PPNCRWMEDSFQMSTIPSFPEHRNHHNRVFGGFLMRSALEISWAAAYLYC
KTRPKLEHISDISFEKPVSVNSFIKMTAYVVYTKENYVQIMTVADVMDPQ
TGSQVTTNTFYYTFSSPDTVTEVLPRSYHETMWYIQGRRKFEASMGPV*
BS08866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1635-PA | 448 | CG1635-PA | 1..448 | 1..448 | 2362 | 100 | Plus |
CG1638-PB | 443 | CG1638-PB | 16..441 | 5..444 | 1602 | 69.5 | Plus |
CG1774-PB | 472 | CG1774-PB | 13..445 | 6..440 | 1115 | 46.9 | Plus |
CG1774-PA | 472 | CG1774-PA | 13..445 | 6..440 | 1115 | 46.9 | Plus |
CG13771-PA | 451 | CG13771-PA | 40..425 | 52..441 | 830 | 42.4 | Plus |