Clone BS08866 Report

Search the DGRC for BS08866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG1635-RA
Protein status:BS08866.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08866.3prime Sequence

864 bp (816 high quality bases) assembled on 2006-01-18

> BS08866.3prime
ATGGTCTAGAAAGCTTCTACACTGGGCCCATGCTGGCCTCGAACTTTCGA
CGACCTTGGATGTACCACATGGTTTCGTGGTAGGAGCGGGGCAGCACCTC
GGTAACCGTGTCCGGAGACGAGAAGGTGTAGTAGAACGTGTTGGTGGTCA
CCTGGCTGCCCGTTTGTGGGTCCATCACATCTGCAACGGTCATGATCTGC
ACGTAGTTCTCCTTGGTGTACACCACATAGGCGGTCATCTTGATGAAGCT
GTTCACGCTGACGGGCTTCTCGAAGCTGATGTCGGATATGTGCTCCAGCT
TGGGTCGCGTTTTGCAGTAGAGGTAGGCTGCTGCCCAGCTTATCTCCAGG
GCACTTCGCATGAGGAAGCCTCCGAAGACCCGGTTGTGGTGGTTCCTGTG
CTCCGGAAATGAGGGAATAGTGCTCATCTGGAAAGAGTCCTCCATCCAGC
GACAGTTTGGTGGCAGGATGCGCTTGTTGAGTTCCAAAGTGTTGGTGGGA
GTTGTCCTTTTGTACAGCTCGTACATAATTGTCTGCTCCGGGTCATTGGG
TTCCACCTTAAAGATGGACTGAGCACAGAGAATCTGACGTTTCTTCTTTC
TATCTGCGCCGCCAGCCAGAATCACTTTCTCTTCCTCGTTGGCCGGCTGT
AAGGGGTTCACAGGAGCCGCTCCGGTATTGTTAGCGTTTCTTGCTGCCAT
CAGGAACAAGGCACGGGTTAACTTTTGGTACCTCCCGCCAACCATCTGTT
CCAGCCACACTACCACCTCAATTGAACTGGTTCCCACCCAGGAAACGTGC
CCAGACAAACGGATATCTTGGGTGCCTGAAGCCAAGACATTGGTGAAATC
GATGCGGTCCACCA

BS08866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-PA 1347 CG1635-RA 500..1347 864..17 4240 100 Minus
CG1638-PA 1149 CG1638-RA 866..989 306..183 370 91.9 Minus
CG1638-PA 1149 CG1638-RA 1021..1121 151..51 230 89.1 Minus
CG1638-PA 1149 CG1638-RA 733..782 439..390 200 96 Minus
CG1638-PA 1149 CG1638-RA 349..431 826..744 190 89.1 Minus
CG1638-PA 1149 CG1638-RA 793..860 379..312 140 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-RA 1548 CG1635-RA 580..1428 864..16 4245 100 Minus
CG1638-RB 1567 CG1638-RB 531..1361 864..31 1640 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31589424..31590272 864..16 4245 100 Minus
3R 32079331 3R 31591280..31592110 864..31 1585 79.9 Minus
Blast to na_te.dros performed on 2015-02-11 18:01:05 has no hits.

BS08866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:24 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-PA 501..1347 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:14 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-PA 501..1347 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:53 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 586..1433 16..863 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:59 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 581..1428 16..863 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:59 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31589425..31590272 16..863 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:53 Download gff for BS08866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27415147..27415994 16..863 100   Minus

BS08866.5prime Sequence

819 bp (784 high quality bases) assembled on 2006-01-18

> BS08866.5prime
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTT

BS08866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-PA 1347 CG1635-RA 1..803 17..819 4015 100 Plus
CG1638-PA 1149 CG1638-RA 349..431 554..636 190 89.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-RA 1548 CG1635-RA 77..883 13..819 4020 99.9 Plus
CG1638-RB 1567 CG1638-RB 200..834 185..819 835 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31589345..31589727 437..819 1915 100 Plus
3R 32079331 3R 31589043..31589286 194..437 1220 100 Plus
3R 32079331 3R 31591201..31591583 437..819 580 76.8 Plus
3R 32079331 3R 31588749..31588860 13..124 545 99.1 Plus
3R 32079331 3R 31588920..31588990 124..194 355 100 Plus
3R 32079331 3R 31590898..31591056 194..352 225 76.1 Plus
Blast to na_te.dros performed 2015-02-10 23:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2707..2754 252..299 132 75 Plus

BS08866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:26 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:15 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:35 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 73..888 2..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:12 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 68..883 2..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:12 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31588920..31588990 124..194 100 -> Plus
3R 31589044..31589286 195..437 100 -> Plus
3R 31588740..31588859 2..123 95 -> Plus
3R 31589346..31589727 438..819 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:35 Download gff for BS08866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27414462..27414581 2..123 95 -> Plus
arm_3R 27414642..27414712 124..194 100 -> Plus
arm_3R 27414766..27415008 195..437 100 -> Plus
arm_3R 27415068..27415449 438..819 100   Plus

BS08866.complete Sequence

1379 bp (1379 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636304

> BS08866.complete
GAAGTTATCAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCT
GGGGCCTGATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTG
CCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATAT
CAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGC
AGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCC
AAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCC
TCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCA
CGGACCGCAGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGA
TTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCA
TAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACA
CCTTTGTGACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCT
TCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAAC
CAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGT
ACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAAC
AATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGA
GAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTC
TCTGTGCTCAGTCCATCTTTAAGGTGGAACCCAATGACCCGGAGCAGACA
ATTATGTACGAGCTGTACAAAAGGACAACTCCCACCAACACTTTGGAACT
CAACAAGCGCATCCTGCCACCAAACTGTCGCTGGATGGAGGACTCTTTCC
AGATGAGCACTATTCCCTCATTTCCGGAGCACAGGAACCACCACAACCGG
GTCTTCGGAGGCTTCCTCATGCGAAGTGCCCTGGAGATAAGCTGGGCAGC
AGCCTACCTCTACTGCAAAACGCGACCCAAGCTGGAGCACATATCCGACA
TCAGCTTCGAGAAGCCCGTCAGCGTGAACAGCTTCATCAAGATGACCGCC
TATGTGGTGTACACCAAGGAGAACTACGTGCAGATCATGACCGTTGCAGA
TGTGATGGACCCACAAACGGGCAGCCAGGTGACCACCAACACGTTCTACT
ACACCTTCTCGTCTCCGGACACGGTTACCGAGGTGCTGCCCCGCTCCTAC
CACGAAACCATGTGGTACATCCAAGGTCGTCGAAAGTTCGAGGCCAGCAT
GGGCCCAGTGTAGAAGCTTTCTAGACCAT

BS08866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-RA 1347 CG1635-PA 1..1347 17..1363 6735 100 Plus
CG1638-RB 1332 CG1638-PB 163..1324 185..1349 1920 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-RA 1548 CG1635-RA 77..1428 13..1364 6745 99.9 Plus
CG1638-RB 1567 CG1638-RB 200..1361 185..1349 1920 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31589345..31590272 437..1364 4640 100 Plus
3R 32079331 3R 31591201..31592110 437..1349 1710 79.6 Plus
3R 32079331 3R 31589043..31589286 194..437 1220 100 Plus
3R 32079331 3R 31588749..31588860 13..124 545 99.1 Plus
3R 32079331 3R 31588920..31588990 124..194 355 100 Plus
3R 32079331 3R 31590898..31591056 194..352 225 76.1 Plus
Blast to na_te.dros performed 2014-11-27 07:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2707..2754 252..299 132 75 Plus

BS08866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:41 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:43 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 73..1433 2..1364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:54 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 86..1432 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:41 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 73..1433 2..1364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:48 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 81..1427 17..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:48 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31588753..31588859 17..123 100 -> Plus
3R 31588920..31588990 124..194 100 -> Plus
3R 31589044..31589286 195..437 100 -> Plus
3R 31589346..31590271 438..1363 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:54 Download gff for BS08866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27414642..27414712 124..194 100 -> Plus
arm_3R 27414766..27415008 195..437 100 -> Plus
arm_3R 27414475..27414581 17..123 100 -> Plus
arm_3R 27415068..27415993 438..1363 100   Plus

BS08866.pep Sequence

Translation from 16 to 1362

> BS08866.pep
MMRSLIGAQKCWGLIRTRNFMELPTKQVPASFALFKRHYSPPTHIKQSAV
ANESGTMAEVKQGMMKRLGLEPGYNPLPKSREQLLKYQPKLEDLPPRAMQ
DSFTSAIIPLSTDRSLQDKYVTYLGNVRFGRLLEDMDLFAAWCCHKHLVL
PNLPEGVHLPYTFVTILVDRIDFTNVLASGTQDIRLSGHVSWVGTSSIEV
VVWLEQMVGGRYQKLTRALFLMAARNANNTGAAPVNPLQPANEEEKVILA
GGADRKKKRQILCAQSIFKVEPNDPEQTIMYELYKRTTPTNTLELNKRIL
PPNCRWMEDSFQMSTIPSFPEHRNHHNRVFGGFLMRSALEISWAAAYLYC
KTRPKLEHISDISFEKPVSVNSFIKMTAYVVYTKENYVQIMTVADVMDPQ
TGSQVTTNTFYYTFSSPDTVTEVLPRSYHETMWYIQGRRKFEASMGPV*

BS08866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-PA 448 CG1635-PA 1..448 1..448 2362 100 Plus
CG1638-PB 443 CG1638-PB 16..441 5..444 1602 69.5 Plus
CG1774-PB 472 CG1774-PB 13..445 6..440 1115 46.9 Plus
CG1774-PA 472 CG1774-PA 13..445 6..440 1115 46.9 Plus
CG13771-PA 451 CG13771-PA 40..425 52..441 830 42.4 Plus