Clone Sequence Records
BS08869.3prime Sequence
958 bp (757 high quality bases) assembled on 2006-01-18
> BS08869.3prime
ATGGTCTAGAAAGCTTCTAATTAAGGGCTGCCACAGCCTTGTGGGCGGCA
TCATCCAAGTCACTGGCTGTCTGAATGGGCAGGCCCGAATTCTTCAGGAT
CTCGCGAGCCTGATTTACATTGGTGCCCTCCAGTCGCACAACCAGTGGAA
CATTCAGTTGCAGCTTTTTGGATGCAGCCACAATGCCATTGGCAATGGTG
GCACAATTGACAATGCCGCCAAAGACATTGACCAGGATTCCCTTGACTTT
CGGGTCAGCAGTGAGGATCTCGAAGGCTTTGGCCACCTGATCCTCCCTGA
CGCCACCGCCGACGTCCAAAAAGTTGGCGGGCTCGCCTCCATTCAGCTTG
ATGATGTCCATGGTGGCCATGGCCAGGCCGGCACCATTAACCAAGCAGCC
AATGTTGCCATCCATGGCGACGTAGTTCAGATTGTACTTGGCCGCCTCCA
CTTCTCGGGGATCGGATTCCTCCTCGGTGACGTCCATGGAGAAAATATCC
TTCTGACGGAACTGGGCATTGTCGTCAAAGTTGAGCTTAGCATCAACGGA
GATAACTTCTCCCTTATCCGTCTCCGCCAGCGGGTTGATCTCGATCTGTA
CGGCATCCACAGCTTTGAAGAGAGTATAGAGTTTTTGAATTTCCTCAGCA
CAACGCTTTACAGAGTCTCCCTTGAACTCCAAGAACTTGGCCACCTCCAA
GAGCGTCGACTCCGGTATGGGCTTGCCAATGTCTAGCGGAACAGTCTTAA
TTTTCTCAGGGGTTTCCTCGGCCACCGCCTCGATATCCATGCCACCGGCA
GGTGAGGCAATCAGCACGGGTCCATTGTGCTCGCGGTCCAGCAAGATGCA
GAGATAGGTCTCGCGGGTGATGTTGATACTGCGTGCCACCATGACCCTTG
TGACAAAATTCCCGATTTGGGCGTTTGTTTCGTTATCAGTCGGTTTCCAT
CATCTGCT
BS08869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10622-PA | 1251 | Sucb-RA | 372..1251 | 896..17 | 4400 | 100 | Minus |
CG10622-PA | 1251 | Sucb-RA | 318..363 | 949..904 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 456..1399 | 958..17 | 4625 | 99.6 | Minus |
Sucb-RA | 1600 | CG10622-RA | 456..1399 | 958..17 | 4625 | 99.6 | Minus |
skap-RH | 1914 | CG11963-RH | 931..1082 | 454..303 | 355 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5561902..5562835 | 17..949 | 4575 | 99.6 | Plus |
3R | 32079331 | 3R | 8941506..8941657 | 454..303 | 355 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:05:25 has no hits.
BS08869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:29 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-PA | 308..1251 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:20 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10622-PA | 308..1251 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:30 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 456..1399 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:20 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 456..1399 | 17..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:20 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5561902..5562845 | 17..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:30 Download gff for
BS08869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555002..5555945 | 17..958 | 99 | | Plus |
BS08869.5prime Sequence
891 bp (779 high quality bases) assembled on 2006-01-18
> BS08869.5prime
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGANGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTT
BS08869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10622-PA | 1251 | Sucb-RA | 1..875 | 17..891 | 4356 | 99.8 | Plus |
CG10622-PB | 339 | Sucb-RB | 1..281 | 17..297 | 1405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 139..1023 | 7..891 | 4369 | 99.5 | Plus |
Sucb-RA | 1600 | CG10622-RA | 139..1023 | 7..891 | 4369 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5562278..5562875 | 891..294 | 2964 | 99.7 | Minus |
3L | 28110227 | 3L | 5563266..5563397 | 197..66 | 660 | 100 | Minus |
3L | 28110227 | 3L | 5563085..5563185 | 297..197 | 505 | 100 | Minus |
3L | 28110227 | 3L | 5563490..5563553 | 70..7 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:48:01 has no hits.
BS08869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:30 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:21 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10622-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:14 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 137..1023 | 3..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:26:45 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 137..1023 | 3..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:26:45 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5562278..5562871 | 298..891 | 99 | <- | Minus |
3L | 5563085..5563184 | 198..297 | 100 | <- | Minus |
3L | 5563266..5563395 | 68..197 | 100 | <- | Minus |
3L | 5563493..5563555 | 3..67 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:14 Download gff for
BS08869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555378..5555971 | 298..891 | 99 | <- | Minus |
arm_3L | 5556185..5556284 | 198..297 | 100 | <- | Minus |
arm_3L | 5556366..5556495 | 68..197 | 100 | <- | Minus |
arm_3L | 5556593..5556655 | 3..67 | 92 | | Minus |
BS08869.complete Sequence
1283 bp (1283 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636305
> BS08869.complete
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATGG
TGCCGGCCTGGCCATGGCCACCATGGACATCATCAAGCTGAATGGAGGCG
AGCCCGCCAACTTTTTGGACGTCGGCGGTGGCGTCAGGGAGGATCAGGTG
GCCAAAGCCTTCGAGATCCTCACTGCTGACCCGAAAGTCAAGGGAATCCT
GGTCAATGTCTTTGGCGGCATTGTCAATTGTGCCACCATTGCCAATGGCA
TTGTGGCTGCATCCAAAAAGCTGCAACTGAATGTTCCACTGGTTGTGCGA
CTGGAGGGCACCAATGTAAATCAGGCTCGCGAGATCCTGAAGAATTCGGG
CCTGCCCATTCAGACAGCCAGTGACTTGGATGATGCCGCCCACAAGGCTG
TGGCAGCCCTTAATTAGAAGCTTTCTAGACCAT
BS08869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1251 | CG10622-PC | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Sucb-RA | 1251 | CG10622-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
skap-RH | 1356 | CG11963-PH | 856..1007 | 830..981 | 355 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 139..1399 | 7..1267 | 6260 | 99.8 | Plus |
Sucb-RA | 1600 | CG10622-RA | 139..1399 | 7..1267 | 6260 | 99.8 | Plus |
skap-RH | 1914 | CG11963-RH | 931..1082 | 830..981 | 355 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5561902..5562875 | 1267..294 | 4855 | 99.9 | Minus |
3L | 28110227 | 3L | 5563266..5563397 | 197..66 | 660 | 100 | Minus |
3L | 28110227 | 3L | 5563085..5563185 | 297..197 | 505 | 100 | Minus |
3R | 32079331 | 3R | 8941506..8941657 | 830..981 | 355 | 82.2 | Plus |
3L | 28110227 | 3L | 5563490..5563553 | 70..7 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:17:17 has no hits.
BS08869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:42 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:45 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 130..1392 | 3..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:16 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 149..1399 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:42 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 130..1392 | 3..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:38 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 149..1399 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:38 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5561902..5562871 | 298..1267 | 100 | <- | Minus |
3L | 5563085..5563184 | 198..297 | 100 | <- | Minus |
3L | 5563266..5563395 | 68..197 | 100 | <- | Minus |
3L | 5563493..5563543 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:16 Download gff for
BS08869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555002..5555971 | 298..1267 | 100 | <- | Minus |
arm_3L | 5556185..5556284 | 198..297 | 100 | <- | Minus |
arm_3L | 5556366..5556495 | 68..197 | 100 | <- | Minus |
arm_3L | 5556593..5556643 | 17..67 | 100 | | Minus |
BS08869.pep Sequence
Translation from 16 to 1266
> BS08869.pep
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALN*
BS08869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-PC | 416 | CG10622-PC | 1..416 | 1..416 | 2086 | 100 | Plus |
Sucb-PA | 416 | CG10622-PA | 1..416 | 1..416 | 2086 | 100 | Plus |
skap-PH | 451 | CG11963-PH | 35..426 | 20..412 | 962 | 50.8 | Plus |
skap-PG | 451 | CG11963-PG | 35..426 | 20..412 | 962 | 50.8 | Plus |
skap-PB | 502 | CG11963-PB | 35..426 | 20..412 | 962 | 50.8 | Plus |