Clone BS08869 Report

Search the DGRC for BS08869

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptSucb-RA
Protein status:BS08869.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08869.3prime Sequence

958 bp (757 high quality bases) assembled on 2006-01-18

> BS08869.3prime
ATGGTCTAGAAAGCTTCTAATTAAGGGCTGCCACAGCCTTGTGGGCGGCA
TCATCCAAGTCACTGGCTGTCTGAATGGGCAGGCCCGAATTCTTCAGGAT
CTCGCGAGCCTGATTTACATTGGTGCCCTCCAGTCGCACAACCAGTGGAA
CATTCAGTTGCAGCTTTTTGGATGCAGCCACAATGCCATTGGCAATGGTG
GCACAATTGACAATGCCGCCAAAGACATTGACCAGGATTCCCTTGACTTT
CGGGTCAGCAGTGAGGATCTCGAAGGCTTTGGCCACCTGATCCTCCCTGA
CGCCACCGCCGACGTCCAAAAAGTTGGCGGGCTCGCCTCCATTCAGCTTG
ATGATGTCCATGGTGGCCATGGCCAGGCCGGCACCATTAACCAAGCAGCC
AATGTTGCCATCCATGGCGACGTAGTTCAGATTGTACTTGGCCGCCTCCA
CTTCTCGGGGATCGGATTCCTCCTCGGTGACGTCCATGGAGAAAATATCC
TTCTGACGGAACTGGGCATTGTCGTCAAAGTTGAGCTTAGCATCAACGGA
GATAACTTCTCCCTTATCCGTCTCCGCCAGCGGGTTGATCTCGATCTGTA
CGGCATCCACAGCTTTGAAGAGAGTATAGAGTTTTTGAATTTCCTCAGCA
CAACGCTTTACAGAGTCTCCCTTGAACTCCAAGAACTTGGCCACCTCCAA
GAGCGTCGACTCCGGTATGGGCTTGCCAATGTCTAGCGGAACAGTCTTAA
TTTTCTCAGGGGTTTCCTCGGCCACCGCCTCGATATCCATGCCACCGGCA
GGTGAGGCAATCAGCACGGGTCCATTGTGCTCGCGGTCCAGCAAGATGCA
GAGATAGGTCTCGCGGGTGATGTTGATACTGCGTGCCACCATGACCCTTG
TGACAAAATTCCCGATTTGGGCGTTTGTTTCGTTATCAGTCGGTTTCCAT
CATCTGCT

BS08869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10622-PA 1251 Sucb-RA 372..1251 896..17 4400 100 Minus
CG10622-PA 1251 Sucb-RA 318..363 949..904 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 456..1399 958..17 4625 99.6 Minus
Sucb-RA 1600 CG10622-RA 456..1399 958..17 4625 99.6 Minus
skap-RH 1914 CG11963-RH 931..1082 454..303 355 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5561902..5562835 17..949 4575 99.6 Plus
3R 32079331 3R 8941506..8941657 454..303 355 82.2 Minus
Blast to na_te.dros performed on 2015-02-11 18:05:25 has no hits.

BS08869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:29 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-PA 308..1251 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:20 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10622-PA 308..1251 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:30 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 456..1399 17..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:20 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 456..1399 17..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:20 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5561902..5562845 17..958 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:30 Download gff for BS08869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555002..5555945 17..958 99   Plus

BS08869.5prime Sequence

891 bp (779 high quality bases) assembled on 2006-01-18

> BS08869.5prime
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGANGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTT

BS08869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10622-PA 1251 Sucb-RA 1..875 17..891 4356 99.8 Plus
CG10622-PB 339 Sucb-RB 1..281 17..297 1405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 139..1023 7..891 4369 99.5 Plus
Sucb-RA 1600 CG10622-RA 139..1023 7..891 4369 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5562278..5562875 891..294 2964 99.7 Minus
3L 28110227 3L 5563266..5563397 197..66 660 100 Minus
3L 28110227 3L 5563085..5563185 297..197 505 100 Minus
3L 28110227 3L 5563490..5563553 70..7 275 95.3 Minus
Blast to na_te.dros performed on 2015-02-13 02:48:01 has no hits.

BS08869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:30 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:21 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10622-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:14 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 137..1023 3..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:26:45 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 137..1023 3..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:26:45 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5562278..5562871 298..891 99 <- Minus
3L 5563085..5563184 198..297 100 <- Minus
3L 5563266..5563395 68..197 100 <- Minus
3L 5563493..5563555 3..67 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:14 Download gff for BS08869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555378..5555971 298..891 99 <- Minus
arm_3L 5556185..5556284 198..297 100 <- Minus
arm_3L 5556366..5556495 68..197 100 <- Minus
arm_3L 5556593..5556655 3..67 92   Minus

BS08869.complete Sequence

1283 bp (1283 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636305

> BS08869.complete
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATGG
TGCCGGCCTGGCCATGGCCACCATGGACATCATCAAGCTGAATGGAGGCG
AGCCCGCCAACTTTTTGGACGTCGGCGGTGGCGTCAGGGAGGATCAGGTG
GCCAAAGCCTTCGAGATCCTCACTGCTGACCCGAAAGTCAAGGGAATCCT
GGTCAATGTCTTTGGCGGCATTGTCAATTGTGCCACCATTGCCAATGGCA
TTGTGGCTGCATCCAAAAAGCTGCAACTGAATGTTCCACTGGTTGTGCGA
CTGGAGGGCACCAATGTAAATCAGGCTCGCGAGATCCTGAAGAATTCGGG
CCTGCCCATTCAGACAGCCAGTGACTTGGATGATGCCGCCCACAAGGCTG
TGGCAGCCCTTAATTAGAAGCTTTCTAGACCAT

BS08869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1251 CG10622-PC 1..1251 17..1267 6255 100 Plus
Sucb-RA 1251 CG10622-PA 1..1251 17..1267 6255 100 Plus
skap-RH 1356 CG11963-PH 856..1007 830..981 355 82.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 139..1399 7..1267 6260 99.8 Plus
Sucb-RA 1600 CG10622-RA 139..1399 7..1267 6260 99.8 Plus
skap-RH 1914 CG11963-RH 931..1082 830..981 355 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5561902..5562875 1267..294 4855 99.9 Minus
3L 28110227 3L 5563266..5563397 197..66 660 100 Minus
3L 28110227 3L 5563085..5563185 297..197 505 100 Minus
3R 32079331 3R 8941506..8941657 830..981 355 82.2 Plus
3L 28110227 3L 5563490..5563553 70..7 275 95.3 Minus
Blast to na_te.dros performed on 2014-11-27 01:17:17 has no hits.

BS08869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:42 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:45 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 130..1392 3..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:16 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 149..1399 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:42 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 130..1392 3..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:38 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 149..1399 17..1267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:38 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5561902..5562871 298..1267 100 <- Minus
3L 5563085..5563184 198..297 100 <- Minus
3L 5563266..5563395 68..197 100 <- Minus
3L 5563493..5563543 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:16 Download gff for BS08869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555002..5555971 298..1267 100 <- Minus
arm_3L 5556185..5556284 198..297 100 <- Minus
arm_3L 5556366..5556495 68..197 100 <- Minus
arm_3L 5556593..5556643 17..67 100   Minus

BS08869.pep Sequence

Translation from 16 to 1266

> BS08869.pep
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALN*

BS08869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-PC 416 CG10622-PC 1..416 1..416 2086 100 Plus
Sucb-PA 416 CG10622-PA 1..416 1..416 2086 100 Plus
skap-PH 451 CG11963-PH 35..426 20..412 962 50.8 Plus
skap-PG 451 CG11963-PG 35..426 20..412 962 50.8 Plus
skap-PB 502 CG11963-PB 35..426 20..412 962 50.8 Plus