Clone BS08870 Report

Search the DGRC for BS08870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG6422-RA
Protein status:BS08870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08870.3prime Sequence

825 bp (824 high quality bases) assembled on 2006-01-18

> BS08870.3prime
ATGGTCTAGAAAGCTTTTATGAATATTCATTGCTTCGCATTTTATCCTTG
TCCGTGTCCTTAAAGCGCACGCCGATTTTAATTTGTTCAGTACTAAAGTC
ACGATCTCGGGTTTTTAACCTGGCCTTGTTCGTATTATTGTGTTTGTATT
CATTTTTTCGGTTATTGGACCCGTAGTGGGACCCAAAGTCATTTTCTCTG
TCAAAGTCCGGGCCATCGCGGTCCTTGAACTGATAGTCGCTGCTTGATTT
ATGAATGTCGAAGCCTCGACGATACTCGCTGTAATTGTTGTGTGATCCGC
CACTGCCGGCGCCACCCCTATGACCTGGATTACGGAAACCAGCTCCTCCT
CCAGAATTGAAGTGCTTTTGTGACATGCCGCCGCGTCCGTCGCGATCCCT
GTCCTTGTCGTCCGCCTGGCGATTGAAGCTGCGGGCGAGTGGGGCAGGCG
CGTGGTTGTTGCCATCGGGCCCATGCATTGGCGGACGCTTCGAGGACACC
TCTTCCTCCTGCTTCTTTTCATAGTGGAAGAAGTCATCGAATATGGACGT
TGAATGGTTGTACGAGTGCAAAATCTGCAGCACCTCGATGCCTTTGTCGT
TGGGCACTTCCTGGGTGTCCCTTGAGTTCGTCACCGACTTATTCTCATTG
TTCTCCAGTCGAATGTGACGCAGCGTTCCGTTAGGCACATCTTTGACATA
TATCCATTTCACCTTGAACTTGCCCCTCCACTTGTCCTGCGACCAGACGC
TCGACGTTGAGTTGTAGTCGACCGGCGTCATCATTTGTGCCATGCCGCAG
AAATGGCCAGATCCATTCACCGAGA

BS08870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PA 2103 CG6422-RA 1295..2103 825..17 4045 100 Minus
CG6422-PB 2100 CG6422-RB 1292..2100 825..17 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 1617..2426 825..16 4050 100 Minus
CG6422-RC 2616 CG6422-RC 1371..2180 825..16 4050 100 Minus
CG6422-RB 2832 CG6422-RB 1587..2396 825..16 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25034687..25035454 58..825 3840 100 Plus
3R 32079331 3R 25034581..25034625 16..60 225 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:45:21 has no hits.

BS08870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:31 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1296..2103 17..824 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:23 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PB 1293..2100 17..824 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:03 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1588..2399 10..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:44 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1588..2399 10..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:44 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25034578..25034623 10..58 93 <- Plus
3R 25034688..25035453 59..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:03 Download gff for BS08870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20860300..20860345 10..58 93 <- Plus
arm_3R 20860410..20861175 59..824 100   Plus

BS08870.5prime Sequence

871 bp (827 high quality bases) assembled on 2006-01-18

> BS08870.5prime
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAG
CCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCTCAGCAG
CCTGTCCACCATGCCGCCCCA

BS08870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PA 2103 CG6422-RA 1..855 17..871 4250 99.8 Plus
CG6422-PB 2100 CG6422-RB 35..852 54..871 4065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 323..1177 17..871 4260 99.9 Plus
CG6422-RA 2965 CG6422-RA 157..1011 17..871 4260 99.9 Plus
CG6422-RC 2616 CG6422-RC 91..931 31..871 4190 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25035960..25036331 871..500 1845 99.7 Minus
3R 32079331 3R 25036392..25036538 500..354 735 100 Minus
3R 32079331 3R 25038211..25038319 260..152 545 100 Minus
3R 32079331 3R 25038420..25038519 153..54 500 100 Minus
3R 32079331 3R 25036623..25036718 355..260 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:31:10 has no hits.

BS08870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:32 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1..854 17..870 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:24 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-PA 1..854 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:08 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 151..1010 9..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:57:07 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 151..1010 9..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:57:07 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25035961..25036331 500..870 99 <- Minus
3R 25036393..25036536 356..499 100 <- Minus
3R 25036623..25036717 261..355 100 <- Minus
3R 25038211..25038318 153..260 100 <- Minus
3R 25038421..25038516 57..152 100 <- Minus
3R 25038653..25038674 35..56 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:08 Download gff for BS08870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20862115..20862258 356..499 100 <- Minus
arm_3R 20862345..20862439 261..355 100 <- Minus
arm_3R 20861683..20862053 500..870 99 <- Minus
arm_3R 20863933..20864040 153..260 100 <- Minus
arm_3R 20864143..20864238 57..152 100 <- Minus
arm_3R 20864375..20864396 35..56 100 <- Minus

BS08870.complete Sequence

2135 bp assembled on 2008-01-16

GenBank Submission: FJ636306

> BS08870.complete
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAG
CCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCCCAGCAG
CCTGTCCACCATGCCGCCCCACGTCCAGCGACCAATGCCGGTCCATTTGG
GCCACCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACT
CGGAGCGCTCGGGCAACTATTCCAGTTTCCGCGGCAGCGAGTTTGAGAGT
GCTTCGAAGTTCGAATACCGCGACGAGAACCAATCACGACCGGTGGAAGC
CACATCTGCAACCGAAGAGCTGCCTGTCGATTCCCAACTCGTGTTGGACG
AATTAAAAGACAAAAACAATTACAACCCAAAAGTGTTGGACTTGAAAAAA
GCCGGATCGGCCAGATTCTTTGTCATCAAATCGTACTCCGAAGATGACAT
CCATCGCAGTATAAAGTATGAGATTTGGTGCTCAACCGATCACGGCAATA
AGAGATTGGACGATGCCTTCAAGGAGCGACACGAAGAGGGCGGCAACATA
ATGCTGTTCTTCTCGGTGAATGGATCTGGCCATTTCTGCGGCATGGCACA
AATGATGACGCCGGTCGACTACAACTCAACGTCGAGCGTCTGGTCGCAGG
ACAAGTGGAGGGGCAAGTTCAAGGTGAAATGGATATATGTCAAAGATGTG
CCTAACGGAACGCTGCGTCACATTCGACTGGAGAACAATGAGAATAAGTC
GGTGACGAACTCAAGGGACACCCAGGAAGTGCCCAACGACAAAGGCATCG
AGGTGCTGCAGATTTTGCACTCGTACAACCATTCAACGTCCATATTCGAT
GACTTCTTCCACTATGAAAAGAAGCAGGAGGAAGAGGTGTCCTCGAAGCG
TCCGCCAATGCATGGGCCCGATGGCAACAACCACGCGCCTGCCCCACTCG
CCCGCAGCTTCAATCGCCAGGCGGACGACAAGGACAGGGATCGCGACGGA
CGCGGCGGCATGTCACAAAAGCACTTCAATTCTGGAGGAGGAGCTGGTTT
CCGTAATCCAGGTCATAGGGGTGGCGCCGGCAGTGGCGGATCACACAACA
ATTACAGCGAGTATCGTCGAGGCTTCGACATTCATAAATCAAGCAGCGAC
TATCAGTTCAAGGACCGCGATGGCCCGGACTTTGACAGAGAAAATGACTT
TGGGTCCCACTACGGGTCCAATAACCGAAAAAATGAATACAAACACAATA
ATACGAACAAGGCCAGGTTAAAAACCCGAGATCGTGACTTTAGTACTGAA
CAAATTAAAATCGGCGTGCGCTTTAAGGACACGGACAAGGATAAAATGCG
AAGCAATGAATATTCATAAAAGCTTTCTAGACCAT

BS08870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2103 CG6422-PD 1..2103 17..2119 10515 100 Plus
CG6422-RA 2103 CG6422-PA 1..2103 17..2119 10515 100 Plus
CG6422-RC 2085 CG6422-PC 1..2085 35..2119 10425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-RD 2862 CG6422-RD 323..2426 17..2120 10520 100 Plus
CG6422-RA 2965 CG6422-RA 157..2260 17..2120 10520 100 Plus
CG6422-RC 2616 CG6422-RC 91..2180 31..2120 10450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25034687..25035603 2078..1162 4585 100 Minus
3R 32079331 3R 25035667..25036331 1164..500 3325 100 Minus
3R 32079331 3R 25036392..25036538 500..354 735 100 Minus
3R 32079331 3R 25038211..25038319 260..152 545 100 Minus
3R 32079331 3R 25038420..25038519 153..54 500 100 Minus
3R 32079331 3R 25036623..25036718 355..260 480 100 Minus
3R 32079331 3R 25034581..25034625 2120..2076 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:54:29 has no hits.

BS08870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:52 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 1..2103 17..2119 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:50 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 153..2253 17..2117 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:27 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 157..2257 17..2117 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:52 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 147..2259 9..2126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:51 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RA 157..2257 17..2117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:51 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25036393..25036536 356..499 100 <- Minus
3R 25036623..25036717 261..355 100 <- Minus
3R 25038211..25038318 153..260 100 <- Minus
3R 25038421..25038516 57..152 100 <- Minus
3R 25038653..25038674 35..56 100 <- Minus
3R 25038846..25038863 17..34 100   Minus
3R 25034584..25034623 2078..2117 100 <- Minus
3R 25034688..25035600 1165..2077 100 <- Minus
3R 25035667..25036331 500..1164 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:27 Download gff for BS08870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20863933..20864040 153..260 100 <- Minus
arm_3R 20864143..20864238 57..152 100 <- Minus
arm_3R 20864375..20864396 35..56 100 <- Minus
arm_3R 20864568..20864585 17..34 100   Minus
arm_3R 20862115..20862258 356..499 100 <- Minus
arm_3R 20862345..20862439 261..355 100 <- Minus
arm_3R 20860306..20860345 2078..2117 100 <- Minus
arm_3R 20860410..20861322 1165..2077 100 <- Minus
arm_3R 20861389..20862053 500..1164 100 <- Minus

BS08870.pep Sequence

Translation from 16 to 2118

> BS08870.pep
MSGVDQMKIPGNTAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNS
MQFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEH
QVNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWAS
IASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKP
PPVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEH
KGLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNAR
RHDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATE
ELPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIK
YEIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPV
DYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSR
DTQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHG
PDGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGH
RGGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYG
SNNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYS
*

BS08870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PD 700 CG6422-PD 1..700 1..700 3807 100 Plus
CG6422-PA 700 CG6422-PA 1..700 1..700 3807 100 Plus
CG6422-PC 694 CG6422-PC 1..694 7..700 3777 100 Plus
CG6422-PB 699 CG6422-PB 8..699 9..700 3751 99.6 Plus