Clone Sequence Records
BS08870.3prime Sequence
825 bp (824 high quality bases) assembled on 2006-01-18
> BS08870.3prime
ATGGTCTAGAAAGCTTTTATGAATATTCATTGCTTCGCATTTTATCCTTG
TCCGTGTCCTTAAAGCGCACGCCGATTTTAATTTGTTCAGTACTAAAGTC
ACGATCTCGGGTTTTTAACCTGGCCTTGTTCGTATTATTGTGTTTGTATT
CATTTTTTCGGTTATTGGACCCGTAGTGGGACCCAAAGTCATTTTCTCTG
TCAAAGTCCGGGCCATCGCGGTCCTTGAACTGATAGTCGCTGCTTGATTT
ATGAATGTCGAAGCCTCGACGATACTCGCTGTAATTGTTGTGTGATCCGC
CACTGCCGGCGCCACCCCTATGACCTGGATTACGGAAACCAGCTCCTCCT
CCAGAATTGAAGTGCTTTTGTGACATGCCGCCGCGTCCGTCGCGATCCCT
GTCCTTGTCGTCCGCCTGGCGATTGAAGCTGCGGGCGAGTGGGGCAGGCG
CGTGGTTGTTGCCATCGGGCCCATGCATTGGCGGACGCTTCGAGGACACC
TCTTCCTCCTGCTTCTTTTCATAGTGGAAGAAGTCATCGAATATGGACGT
TGAATGGTTGTACGAGTGCAAAATCTGCAGCACCTCGATGCCTTTGTCGT
TGGGCACTTCCTGGGTGTCCCTTGAGTTCGTCACCGACTTATTCTCATTG
TTCTCCAGTCGAATGTGACGCAGCGTTCCGTTAGGCACATCTTTGACATA
TATCCATTTCACCTTGAACTTGCCCCTCCACTTGTCCTGCGACCAGACGC
TCGACGTTGAGTTGTAGTCGACCGGCGTCATCATTTGTGCCATGCCGCAG
AAATGGCCAGATCCATTCACCGAGA
BS08870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-PA | 2103 | CG6422-RA | 1295..2103 | 825..17 | 4045 | 100 | Minus |
CG6422-PB | 2100 | CG6422-RB | 1292..2100 | 825..17 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-RD | 2862 | CG6422-RD | 1617..2426 | 825..16 | 4050 | 100 | Minus |
CG6422-RC | 2616 | CG6422-RC | 1371..2180 | 825..16 | 4050 | 100 | Minus |
CG6422-RB | 2832 | CG6422-RB | 1587..2396 | 825..16 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25034687..25035454 | 58..825 | 3840 | 100 | Plus |
3R | 32079331 | 3R | 25034581..25034625 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:45:21 has no hits.
BS08870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:31 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-PA | 1296..2103 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:23 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-PB | 1293..2100 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:03 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RB | 1588..2399 | 10..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:44 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RB | 1588..2399 | 10..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:44 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25034578..25034623 | 10..58 | 93 | <- | Plus |
3R | 25034688..25035453 | 59..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:03 Download gff for
BS08870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20860300..20860345 | 10..58 | 93 | <- | Plus |
arm_3R | 20860410..20861175 | 59..824 | 100 | | Plus |
BS08870.5prime Sequence
871 bp (827 high quality bases) assembled on 2006-01-18
> BS08870.5prime
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAG
CCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCTCAGCAG
CCTGTCCACCATGCCGCCCCA
BS08870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-PA | 2103 | CG6422-RA | 1..855 | 17..871 | 4250 | 99.8 | Plus |
CG6422-PB | 2100 | CG6422-RB | 35..852 | 54..871 | 4065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-RD | 2862 | CG6422-RD | 323..1177 | 17..871 | 4260 | 99.9 | Plus |
CG6422-RA | 2965 | CG6422-RA | 157..1011 | 17..871 | 4260 | 99.9 | Plus |
CG6422-RC | 2616 | CG6422-RC | 91..931 | 31..871 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25035960..25036331 | 871..500 | 1845 | 99.7 | Minus |
3R | 32079331 | 3R | 25036392..25036538 | 500..354 | 735 | 100 | Minus |
3R | 32079331 | 3R | 25038211..25038319 | 260..152 | 545 | 100 | Minus |
3R | 32079331 | 3R | 25038420..25038519 | 153..54 | 500 | 100 | Minus |
3R | 32079331 | 3R | 25036623..25036718 | 355..260 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:31:10 has no hits.
BS08870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:32 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:24 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:08 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 151..1010 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:57:07 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 151..1010 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:57:07 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25035961..25036331 | 500..870 | 99 | <- | Minus |
3R | 25036393..25036536 | 356..499 | 100 | <- | Minus |
3R | 25036623..25036717 | 261..355 | 100 | <- | Minus |
3R | 25038211..25038318 | 153..260 | 100 | <- | Minus |
3R | 25038421..25038516 | 57..152 | 100 | <- | Minus |
3R | 25038653..25038674 | 35..56 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:08 Download gff for
BS08870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20862115..20862258 | 356..499 | 100 | <- | Minus |
arm_3R | 20862345..20862439 | 261..355 | 100 | <- | Minus |
arm_3R | 20861683..20862053 | 500..870 | 99 | <- | Minus |
arm_3R | 20863933..20864040 | 153..260 | 100 | <- | Minus |
arm_3R | 20864143..20864238 | 57..152 | 100 | <- | Minus |
arm_3R | 20864375..20864396 | 35..56 | 100 | <- | Minus |
BS08870.complete Sequence
2135 bp assembled on 2008-01-16
GenBank Submission: FJ636306
> BS08870.complete
GAAGTTATCAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAA
ACACAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTC
GATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTC
TGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGG
AGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAAC
GCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACAC
ACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAG
CACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAAC
AGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAA
GACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAG
CAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCA
CCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTT
GCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATT
TGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCA
CCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTT
CCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGCAGAG
CCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCCCAGCAG
CCTGTCCACCATGCCGCCCCACGTCCAGCGACCAATGCCGGTCCATTTGG
GCCACCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACT
CGGAGCGCTCGGGCAACTATTCCAGTTTCCGCGGCAGCGAGTTTGAGAGT
GCTTCGAAGTTCGAATACCGCGACGAGAACCAATCACGACCGGTGGAAGC
CACATCTGCAACCGAAGAGCTGCCTGTCGATTCCCAACTCGTGTTGGACG
AATTAAAAGACAAAAACAATTACAACCCAAAAGTGTTGGACTTGAAAAAA
GCCGGATCGGCCAGATTCTTTGTCATCAAATCGTACTCCGAAGATGACAT
CCATCGCAGTATAAAGTATGAGATTTGGTGCTCAACCGATCACGGCAATA
AGAGATTGGACGATGCCTTCAAGGAGCGACACGAAGAGGGCGGCAACATA
ATGCTGTTCTTCTCGGTGAATGGATCTGGCCATTTCTGCGGCATGGCACA
AATGATGACGCCGGTCGACTACAACTCAACGTCGAGCGTCTGGTCGCAGG
ACAAGTGGAGGGGCAAGTTCAAGGTGAAATGGATATATGTCAAAGATGTG
CCTAACGGAACGCTGCGTCACATTCGACTGGAGAACAATGAGAATAAGTC
GGTGACGAACTCAAGGGACACCCAGGAAGTGCCCAACGACAAAGGCATCG
AGGTGCTGCAGATTTTGCACTCGTACAACCATTCAACGTCCATATTCGAT
GACTTCTTCCACTATGAAAAGAAGCAGGAGGAAGAGGTGTCCTCGAAGCG
TCCGCCAATGCATGGGCCCGATGGCAACAACCACGCGCCTGCCCCACTCG
CCCGCAGCTTCAATCGCCAGGCGGACGACAAGGACAGGGATCGCGACGGA
CGCGGCGGCATGTCACAAAAGCACTTCAATTCTGGAGGAGGAGCTGGTTT
CCGTAATCCAGGTCATAGGGGTGGCGCCGGCAGTGGCGGATCACACAACA
ATTACAGCGAGTATCGTCGAGGCTTCGACATTCATAAATCAAGCAGCGAC
TATCAGTTCAAGGACCGCGATGGCCCGGACTTTGACAGAGAAAATGACTT
TGGGTCCCACTACGGGTCCAATAACCGAAAAAATGAATACAAACACAATA
ATACGAACAAGGCCAGGTTAAAAACCCGAGATCGTGACTTTAGTACTGAA
CAAATTAAAATCGGCGTGCGCTTTAAGGACACGGACAAGGATAAAATGCG
AAGCAATGAATATTCATAAAAGCTTTCTAGACCAT
BS08870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-RD | 2103 | CG6422-PD | 1..2103 | 17..2119 | 10515 | 100 | Plus |
CG6422-RA | 2103 | CG6422-PA | 1..2103 | 17..2119 | 10515 | 100 | Plus |
CG6422-RC | 2085 | CG6422-PC | 1..2085 | 35..2119 | 10425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-RD | 2862 | CG6422-RD | 323..2426 | 17..2120 | 10520 | 100 | Plus |
CG6422-RA | 2965 | CG6422-RA | 157..2260 | 17..2120 | 10520 | 100 | Plus |
CG6422-RC | 2616 | CG6422-RC | 91..2180 | 31..2120 | 10450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25034687..25035603 | 2078..1162 | 4585 | 100 | Minus |
3R | 32079331 | 3R | 25035667..25036331 | 1164..500 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 25036392..25036538 | 500..354 | 735 | 100 | Minus |
3R | 32079331 | 3R | 25038211..25038319 | 260..152 | 545 | 100 | Minus |
3R | 32079331 | 3R | 25038420..25038519 | 153..54 | 500 | 100 | Minus |
3R | 32079331 | 3R | 25036623..25036718 | 355..260 | 480 | 100 | Minus |
3R | 32079331 | 3R | 25034581..25034625 | 2120..2076 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:54:29 has no hits.
BS08870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:52 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 1..2103 | 17..2119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:50 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 153..2253 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:27 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 157..2257 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:52 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 147..2259 | 9..2126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:51 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6422-RA | 157..2257 | 17..2117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:51 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25036393..25036536 | 356..499 | 100 | <- | Minus |
3R | 25036623..25036717 | 261..355 | 100 | <- | Minus |
3R | 25038211..25038318 | 153..260 | 100 | <- | Minus |
3R | 25038421..25038516 | 57..152 | 100 | <- | Minus |
3R | 25038653..25038674 | 35..56 | 100 | <- | Minus |
3R | 25038846..25038863 | 17..34 | 100 | | Minus |
3R | 25034584..25034623 | 2078..2117 | 100 | <- | Minus |
3R | 25034688..25035600 | 1165..2077 | 100 | <- | Minus |
3R | 25035667..25036331 | 500..1164 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:27 Download gff for
BS08870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20863933..20864040 | 153..260 | 100 | <- | Minus |
arm_3R | 20864143..20864238 | 57..152 | 100 | <- | Minus |
arm_3R | 20864375..20864396 | 35..56 | 100 | <- | Minus |
arm_3R | 20864568..20864585 | 17..34 | 100 | | Minus |
arm_3R | 20862115..20862258 | 356..499 | 100 | <- | Minus |
arm_3R | 20862345..20862439 | 261..355 | 100 | <- | Minus |
arm_3R | 20860306..20860345 | 2078..2117 | 100 | <- | Minus |
arm_3R | 20860410..20861322 | 1165..2077 | 100 | <- | Minus |
arm_3R | 20861389..20862053 | 500..1164 | 100 | <- | Minus |
BS08870.pep Sequence
Translation from 16 to 2118
> BS08870.pep
MSGVDQMKIPGNTAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNS
MQFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEH
QVNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWAS
IASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKP
PPVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEH
KGLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNAR
RHDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATE
ELPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIK
YEIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPV
DYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSR
DTQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHG
PDGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGH
RGGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYG
SNNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYS
*
BS08870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6422-PD | 700 | CG6422-PD | 1..700 | 1..700 | 3807 | 100 | Plus |
CG6422-PA | 700 | CG6422-PA | 1..700 | 1..700 | 3807 | 100 | Plus |
CG6422-PC | 694 | CG6422-PC | 1..694 | 7..700 | 3777 | 100 | Plus |
CG6422-PB | 699 | CG6422-PB | 8..699 | 9..700 | 3751 | 99.6 | Plus |