Clone BS08872 Report

Search the DGRC for BS08872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG3812-RA
Protein status:BS08872.pep: full length peptide match
Sequenced Size:1064

Clone Sequence Records

BS08872.3prime Sequence

896 bp (850 high quality bases) assembled on 2006-01-18

> BS08872.3prime
ATGGTCTAGAAAGCTTCTAAAGTGTCTTGAGCAAGCTGGCCTTTGCGGCT
CCGGCTTCGTAGCCCGGCGGTTGACCGTATGCCGAACTGCTACTGGCCAC
GGCAGCTGCGGCAGCCACTGCCGCATCCGCAACGGGAGTGACAGCAGTTC
CCGGTGATGCCAATGTTGTTGTTGTCGTAGATGATGTTGATGCTGATGAG
GCGGCTGGAATTCCAACCTTTTTAATGGGCTTATAACGATGCAACGCCTC
CGCAGACGTCACCTTGAACGTTTCAATCATCTGGGAGCGGACACGCTCCA
TTAGCACATCGATGTCGTCCTTGGTTAGTCCTTCGGTGCTAACCGGCGGC
AGCGTGGTAATCACAATGCGACCCGAATTCAAAATCTTTTTCTTATCATT
GAGGAATGTGCAGTAGGAGGAGAAGACCACCGGCAGAATGGGTATCTGCT
GATCGATGGCCATGTGAAAGGCGCCCTTTTTGAACGGATGCAGTGCGCCC
GTATTGCGGCGCGTTCCCTCCGGGAAAACCCACAGTTTGATACGTTGCTT
CTTGATGCGCCGGTTAACATCGTTTAGCGTTTCGCGCGCCTTCTCGCCGC
GCACACGATCGATGAAGATTAGGCCAGCCAACCATGCCGCCAAGCCAAAA
GGCCAGGCGTAGAAGAGCTCTCGTTTGGCCACCACTGTGCACTTGTTCAT
CACATGCCAGATGTTGAACATGCCCAGCACATCCAGCGAGCTTTGGTGAT
TGGCCACAATGATGCAGGCCTGGTCCTTGGCCAAATGCTCCTTGCCGCGC
AGCTCCCATCGCAGGCCAATCAACGTCGAAACGCGGTGGCACCAGGTGCT
CGCCCATAGCAGATTGCGGACATCGCATGGTCTGGTGAGGAATGCC

BS08872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PA 1032 CG3812-RA 153..1032 896..17 4400 100 Minus
CG3812-PB 1032 CG3812-RB 153..1032 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 457..1336 896..17 4400 100 Minus
CG3812-RB 3795 CG3812-RB 686..1565 896..17 4400 100 Minus
CG3812-RA 1831 CG3812-RA 595..1474 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770621 724..17 3540 100 Minus
X 23542271 X 12769691..12769825 857..723 675 100 Minus
X 23542271 X 12767316..12767354 896..858 195 100 Minus
Blast to na_te.dros performed 2015-02-03 08:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2465 207..100 135 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2431 207..164 121 75 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2364 198..147 116 69.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2883 202..105 112 57.1 Minus

BS08872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:35 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 153..1032 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:29 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 153..1032 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:02 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 595..1483 6..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:18 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 595..1483 6..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:18 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12767316..12767354 858..896 100 -> Minus
X 12769691..12769824 724..857 100 -> Minus
X 12769915..12770630 6..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:02 Download gff for BS08872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12663724..12663857 724..857 100 -> Minus
arm_X 12661349..12661387 858..896 100 -> Minus
arm_X 12663948..12664663 6..723 99   Minus

BS08872.5prime Sequence

789 bp (788 high quality bases) assembled on 2006-01-18

> BS08872.5prime
GAAGTTATCAGTCGACATGATTACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGAT

BS08872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PA 1032 CG3812-RA 1..773 17..789 3840 99.8 Plus
CG3812-PB 1032 CG3812-RB 1..773 17..789 3840 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 305..1077 17..789 3850 99.9 Plus
CG3812-RB 3795 CG3812-RB 534..1306 17..789 3850 99.9 Plus
CG3812-RA 1831 CG3812-RA 443..1215 17..789 3850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770362 341..789 2245 100 Plus
X 23542271 X 12767164..12767354 17..207 940 99.5 Plus
X 23542271 X 12769691..12769825 208..342 675 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:44:36 has no hits.

BS08872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:36 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 1..773 17..789 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:30 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-PB 1..773 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:46 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 435..1215 7..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:10 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 435..1215 7..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:10 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12767156..12767354 7..207 97 -> Plus
X 12769691..12769824 208..341 100 -> Plus
X 12769915..12770362 342..789 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:46 Download gff for BS08872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12661189..12661387 7..207 97 -> Plus
arm_X 12663724..12663857 208..341 100 -> Plus
arm_X 12663948..12664395 342..789 100   Plus

BS08872.complete Sequence

1064 bp assembled on 2009-01-26

GenBank Submission: MN238604

> BS08872.complete
GAAGTTATCAGTCGACATGATTACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAGGTT
GGAATTCCAGCCGCCTCATCAGCATCAACATCATCTACGACAACAACAAC
ATTGGCATCACCGGGAACTGCTGTCACTCCCGTTGCGGATGCGGCAGTGG
CTGCCGCAGCTGCCGTGGCCAGTAGCAGTTCGGCATACGGTCAACCGCCG
GGCTACGAAGCCGGAGCCGCAAAGGCCAGCTTGCTCAAGACACTTTAGAA
GCTTTCTAGACCAT

BS08872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 1032 CG3812-PC 1..1032 17..1048 5145 99.9 Plus
CG3812-RB 1032 CG3812-PB 1..1032 17..1048 5145 99.9 Plus
CG3812-RA 1032 CG3812-PA 1..1032 17..1048 5145 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-RC 3566 CG3812-RC 305..1336 17..1048 5145 99.9 Plus
CG3812-RB 3795 CG3812-RB 534..1565 17..1048 5145 99.9 Plus
CG3812-RA 1831 CG3812-RA 443..1474 17..1048 5145 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12769914..12770621 341..1048 3540 100 Plus
X 23542271 X 12767164..12767354 17..207 940 99.5 Plus
X 23542271 X 12769691..12769825 208..342 675 100 Plus
Blast to na_te.dros performed 2014-11-28 01:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2465 858..965 135 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2431 858..901 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2364 867..918 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2883 863..960 112 57.1 Plus

BS08872.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-26 18:28:49 Download gff for BS08872.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RB 532..1563 17..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:52 Download gff for BS08872.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 443..1474 17..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:59 Download gff for BS08872.complete
Subject Subject Range Query Range Percent Splice Strand
CG3812-RA 443..1474 17..1048 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:59 Download gff for BS08872.complete
Subject Subject Range Query Range Percent Splice Strand
X 12767164..12767354 17..207 99 -> Plus
X 12769691..12769824 208..341 100 -> Plus
X 12769915..12770621 342..1048 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:52 Download gff for BS08872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12661197..12661387 17..207 99 -> Plus
arm_X 12663724..12663857 208..341 100 -> Plus
arm_X 12663948..12664654 342..1048 100   Plus

BS08872.pep Sequence

Translation from 16 to 1047

> BS08872.pep
MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSFNSIILI
PAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVAN
HQSSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVR
GEKARETLNDVNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQ
QIPILPVVFSSYCTFLNDKKKILNSGRIVITTLPPVSTEGLTKDDIDVLM
ERVRSQMIETFKVTSAEALHRYKPIKKVGIPAASSASTSSTTTTTLASPG
TAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGAAKASLLKTL*

BS08872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3812-PC 343 CG3812-PC 1..343 1..343 1767 100 Plus
CG3812-PB 343 CG3812-PB 1..343 1..343 1767 100 Plus
CG3812-PA 343 CG3812-PA 1..343 1..343 1767 100 Plus
fu12-PC 271 CG17608-PC 1..261 4..267 426 36 Plus
fu12-PD 271 CG17608-PD 1..261 4..267 426 36 Plus