Clone Sequence Records
BS08872.3prime Sequence
896 bp (850 high quality bases) assembled on 2006-01-18
> BS08872.3prime
ATGGTCTAGAAAGCTTCTAAAGTGTCTTGAGCAAGCTGGCCTTTGCGGCT
CCGGCTTCGTAGCCCGGCGGTTGACCGTATGCCGAACTGCTACTGGCCAC
GGCAGCTGCGGCAGCCACTGCCGCATCCGCAACGGGAGTGACAGCAGTTC
CCGGTGATGCCAATGTTGTTGTTGTCGTAGATGATGTTGATGCTGATGAG
GCGGCTGGAATTCCAACCTTTTTAATGGGCTTATAACGATGCAACGCCTC
CGCAGACGTCACCTTGAACGTTTCAATCATCTGGGAGCGGACACGCTCCA
TTAGCACATCGATGTCGTCCTTGGTTAGTCCTTCGGTGCTAACCGGCGGC
AGCGTGGTAATCACAATGCGACCCGAATTCAAAATCTTTTTCTTATCATT
GAGGAATGTGCAGTAGGAGGAGAAGACCACCGGCAGAATGGGTATCTGCT
GATCGATGGCCATGTGAAAGGCGCCCTTTTTGAACGGATGCAGTGCGCCC
GTATTGCGGCGCGTTCCCTCCGGGAAAACCCACAGTTTGATACGTTGCTT
CTTGATGCGCCGGTTAACATCGTTTAGCGTTTCGCGCGCCTTCTCGCCGC
GCACACGATCGATGAAGATTAGGCCAGCCAACCATGCCGCCAAGCCAAAA
GGCCAGGCGTAGAAGAGCTCTCGTTTGGCCACCACTGTGCACTTGTTCAT
CACATGCCAGATGTTGAACATGCCCAGCACATCCAGCGAGCTTTGGTGAT
TGGCCACAATGATGCAGGCCTGGTCCTTGGCCAAATGCTCCTTGCCGCGC
AGCTCCCATCGCAGGCCAATCAACGTCGAAACGCGGTGGCACCAGGTGCT
CGCCCATAGCAGATTGCGGACATCGCATGGTCTGGTGAGGAATGCC
BS08872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PA | 1032 | CG3812-RA | 153..1032 | 896..17 | 4400 | 100 | Minus |
CG3812-PB | 1032 | CG3812-RB | 153..1032 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 457..1336 | 896..17 | 4400 | 100 | Minus |
CG3812-RB | 3795 | CG3812-RB | 686..1565 | 896..17 | 4400 | 100 | Minus |
CG3812-RA | 1831 | CG3812-RA | 595..1474 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770621 | 724..17 | 3540 | 100 | Minus |
X | 23542271 | X | 12769691..12769825 | 857..723 | 675 | 100 | Minus |
X | 23542271 | X | 12767316..12767354 | 896..858 | 195 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 08:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2465 | 207..100 | 135 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2431 | 207..164 | 121 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2364 | 198..147 | 116 | 69.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2883 | 202..105 | 112 | 57.1 | Minus |
BS08872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:35 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 153..1032 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:29 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 153..1032 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:02 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 595..1483 | 6..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:18 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 595..1483 | 6..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:18 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12767316..12767354 | 858..896 | 100 | -> | Minus |
X | 12769691..12769824 | 724..857 | 100 | -> | Minus |
X | 12769915..12770630 | 6..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:02 Download gff for
BS08872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12663724..12663857 | 724..857 | 100 | -> | Minus |
arm_X | 12661349..12661387 | 858..896 | 100 | -> | Minus |
arm_X | 12663948..12664663 | 6..723 | 99 | | Minus |
BS08872.5prime Sequence
789 bp (788 high quality bases) assembled on 2006-01-18
> BS08872.5prime
GAAGTTATCAGTCGACATGATTACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGAT
BS08872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PA | 1032 | CG3812-RA | 1..773 | 17..789 | 3840 | 99.8 | Plus |
CG3812-PB | 1032 | CG3812-RB | 1..773 | 17..789 | 3840 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 305..1077 | 17..789 | 3850 | 99.9 | Plus |
CG3812-RB | 3795 | CG3812-RB | 534..1306 | 17..789 | 3850 | 99.9 | Plus |
CG3812-RA | 1831 | CG3812-RA | 443..1215 | 17..789 | 3850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770362 | 341..789 | 2245 | 100 | Plus |
X | 23542271 | X | 12767164..12767354 | 17..207 | 940 | 99.5 | Plus |
X | 23542271 | X | 12769691..12769825 | 208..342 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:44:36 has no hits.
BS08872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:36 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:30 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-PB | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:46 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 435..1215 | 7..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:10 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 435..1215 | 7..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:10 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12767156..12767354 | 7..207 | 97 | -> | Plus |
X | 12769691..12769824 | 208..341 | 100 | -> | Plus |
X | 12769915..12770362 | 342..789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:46 Download gff for
BS08872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12661189..12661387 | 7..207 | 97 | -> | Plus |
arm_X | 12663724..12663857 | 208..341 | 100 | -> | Plus |
arm_X | 12663948..12664395 | 342..789 | 100 | | Plus |
BS08872.complete Sequence
1064 bp assembled on 2009-01-26
GenBank Submission: MN238604
> BS08872.complete
GAAGTTATCAGTCGACATGATTACCATGACTTCGTTTATCGAACTGCTGG
GACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATA
TTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAA
CTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCA
ATCTGCTATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGC
CTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTG
CATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCA
ACATCTGGCATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTC
TTCTACGCCTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTT
CATCGATCGTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTA
ACCGGCGCATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGA
ACGCGCCGCAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCA
CATGGCCATCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCT
ACTGCACATTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATT
GTGATTACCACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGA
CATCGATGTGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCA
AGGTGACGTCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAGGTT
GGAATTCCAGCCGCCTCATCAGCATCAACATCATCTACGACAACAACAAC
ATTGGCATCACCGGGAACTGCTGTCACTCCCGTTGCGGATGCGGCAGTGG
CTGCCGCAGCTGCCGTGGCCAGTAGCAGTTCGGCATACGGTCAACCGCCG
GGCTACGAAGCCGGAGCCGCAAAGGCCAGCTTGCTCAAGACACTTTAGAA
GCTTTCTAGACCAT
BS08872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 1032 | CG3812-PC | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
CG3812-RB | 1032 | CG3812-PB | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
CG3812-RA | 1032 | CG3812-PA | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-RC | 3566 | CG3812-RC | 305..1336 | 17..1048 | 5145 | 99.9 | Plus |
CG3812-RB | 3795 | CG3812-RB | 534..1565 | 17..1048 | 5145 | 99.9 | Plus |
CG3812-RA | 1831 | CG3812-RA | 443..1474 | 17..1048 | 5145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12769914..12770621 | 341..1048 | 3540 | 100 | Plus |
X | 23542271 | X | 12767164..12767354 | 17..207 | 940 | 99.5 | Plus |
X | 23542271 | X | 12769691..12769825 | 208..342 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2465 | 858..965 | 135 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2431 | 858..901 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2364 | 867..918 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2883 | 863..960 | 112 | 57.1 | Plus |
BS08872.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-26 18:28:49 Download gff for
BS08872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RB | 532..1563 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:52 Download gff for
BS08872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 443..1474 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:59 Download gff for
BS08872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3812-RA | 443..1474 | 17..1048 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:59 Download gff for
BS08872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12767164..12767354 | 17..207 | 99 | -> | Plus |
X | 12769691..12769824 | 208..341 | 100 | -> | Plus |
X | 12769915..12770621 | 342..1048 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:52 Download gff for
BS08872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12661197..12661387 | 17..207 | 99 | -> | Plus |
arm_X | 12663724..12663857 | 208..341 | 100 | -> | Plus |
arm_X | 12663948..12664654 | 342..1048 | 100 | | Plus |
BS08872.pep Sequence
Translation from 16 to 1047
> BS08872.pep
MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSFNSIILI
PAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVAN
HQSSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVR
GEKARETLNDVNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQ
QIPILPVVFSSYCTFLNDKKKILNSGRIVITTLPPVSTEGLTKDDIDVLM
ERVRSQMIETFKVTSAEALHRYKPIKKVGIPAASSASTSSTTTTTLASPG
TAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGAAKASLLKTL*
BS08872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3812-PC | 343 | CG3812-PC | 1..343 | 1..343 | 1767 | 100 | Plus |
CG3812-PB | 343 | CG3812-PB | 1..343 | 1..343 | 1767 | 100 | Plus |
CG3812-PA | 343 | CG3812-PA | 1..343 | 1..343 | 1767 | 100 | Plus |
fu12-PC | 271 | CG17608-PC | 1..261 | 4..267 | 426 | 36 | Plus |
fu12-PD | 271 | CG17608-PD | 1..261 | 4..267 | 426 | 36 | Plus |