Clone Sequence Records
BS08875.3prime Sequence
943 bp (757 high quality bases) assembled on 2006-01-18
> BS08875.3prime
ATGGTCTAGAAAGCTTCTAAGCCAATGGTGCATCAGCATCAAGATGGTAG
CTCTTTACGGTTGAGAACCTCAGCGCCGGATATTTGGCCTCGGTCAAATC
GAACTCGGAGCTGATGTCCACCTTGTTGCGCTTCTGCACGAGCGTGTAAT
GTGACCAAACCAACTGGGCGCATCGGCGCTTGGTGGTGCCTGCGATGCGC
AGCTCGATCAGGAACTGTGAGGAGTCCTCATCCACTGGCATGATACTCCC
TCGCCTCTGCCGCACGTTAGCCGGCCCTCGCTGCTGCGACTTTTGCAGCA
CCAGAGTGACTGTGCTCCCGAAGAGACGATAGCGACCCCGAAGCATTTCC
GCCCGTACGTTGTTCACGTGCTTCAGTTTGGATACACCTTGCGCCGGCTC
ATCGGCAGTCGTCATCATCAGCACCTTGCCATCGGGCAGAAAGCGAATGT
AGCGATAGTACTCCACCAGTTGCACAGGACGGTAGAACTGATCCTGGAAG
CTGTTCTCGCCCATTCTCAGGTACGTAGTCTTGCTGATGTAGCAGCCGTT
GAAAAGAACTCGGTCTCGGCGGATGAACATGTCTCGCCAGGAGTGGAACA
CGTTGCTTACATCCGAATCCTGGGCCTCTAGAGTTCCAACGTTGTGGCCC
CATACTTTGACACAAGCTAGCCTCCAGAGCTCCTCATCCCGCGCGTAGAC
ATAGAAACCTTTGCAAACAGCAGCGCACTGCTCTAGCGAGCGCATGTCCA
GTTGGGCGGAAACCACCCAGCGCAGGATGCGCATCACAATCTCGGGCGGC
AGGTCGGCAAAGTGCAGACCGGTGGTCAGGACATTGGCATCACGGCTGGA
TGCTATCATCTTGCCATTTGTAATGTTTTTCTGACGCAAATCATGCTGGA
ACTTTTCGTACAGGTTGTCCACGACCTCCTCCCCCATCGACTG
BS08875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-PA | 1329 | CG5961-RA | 478..1329 | 868..17 | 4260 | 100 | Minus |
CG5961-PA | 1329 | CG5961-RA | 412..474 | 934..872 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-RB | 1463 | CG5961-RB | 468..1385 | 934..17 | 4545 | 99.8 | Minus |
CG5961-RC | 1653 | CG5961-RC | 658..1575 | 934..17 | 4545 | 99.8 | Minus |
CG5961-RA | 1658 | CG5961-RA | 663..1580 | 934..17 | 4545 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12458499..12459138 | 17..656 | 3200 | 100 | Plus |
3R | 32079331 | 3R | 12459200..12459477 | 657..934 | 1345 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:30 has no hits.
BS08875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:40 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-PA | 403..1329 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:34 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-PA | 403..1329 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:47 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 654..1583 | 11..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:06 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 654..1583 | 11..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:06 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12458496..12459138 | 11..656 | 99 | <- | Plus |
3R | 12459200..12459486 | 657..943 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:47 Download gff for
BS08875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8284218..8284860 | 11..656 | 99 | <- | Plus |
arm_3R | 8284922..8285208 | 657..943 | 98 | | Plus |
BS08875.5prime Sequence
808 bp (807 high quality bases) assembled on 2006-01-18
> BS08875.5prime
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTT
BS08875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-PA | 1329 | CG5961-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-RB | 1463 | CG5961-RB | 56..848 | 16..808 | 3965 | 100 | Plus |
CG5961-RC | 1653 | CG5961-RC | 246..1038 | 16..808 | 3965 | 100 | Plus |
CG5961-RA | 1658 | CG5961-RA | 251..1043 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12459200..12459889 | 705..16 | 3450 | 100 | Minus |
3R | 32079331 | 3R | 12459036..12459138 | 808..706 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:22:10 has no hits.
BS08875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:42 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:36 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:03 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 251..1043 | 16..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:14 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 251..1043 | 16..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:14 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12459036..12459138 | 706..808 | 100 | <- | Minus |
3R | 12459200..12459889 | 16..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:03 Download gff for
BS08875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8284758..8284860 | 706..808 | 100 | <- | Minus |
arm_3R | 8284922..8285611 | 16..705 | 100 | | Minus |
BS08875.complete Sequence
1361 bp (1361 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636307
> BS08875.complete
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTTTTCAACGGCTGCTACATCAGCAAGACTACGTACCTGAGAATG
GGCGAGAACAGCTTCCAGGATCAGTTCTACCGTCCTGTGCAACTGGTGGA
GTACTATCGCTACATTCGCTTTCTGCCCGATGGCAAGGTGCTGATGATGA
CGACTGCCGATGAGCCGGCGCAAGGTGTATCCAAACTGAAGCACGTGAAC
AACGTACGGGCGGAAATGCTTCGGGGTCGCTATCGTCTCTTCGGGAGCAC
AGTCACTCTGGTGCTGCAAAAGTCGCAGCAGCGAGGGCCGGCTAACGTGC
GGCAGAGGCGAGGGAGTATCATGCCAGTGGATGAGGACTCCTCACAGTTC
CTGATCGAGCTGCGCATCGCAGGCACCACCAAGCGCCGATGCGCCCAGTT
GGTTTGGTCACATTACACGCTCGTGCAGAAGCGCAACAAGGTGGACATCA
GCTCCGAGTTCGATTTGACCGAGGCCAAATATCCGGCGCTGAGGTTCTCA
ACCGTAAAGAGCTACCATCTTGATGCTGATGCACCATTGGCTTAGAAGCT
TTCTAGACCAT
BS08875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-RB | 1329 | CG5961-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
CG5961-RC | 1329 | CG5961-PC | 1..1329 | 17..1345 | 6645 | 100 | Plus |
CG5961-RA | 1329 | CG5961-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-RB | 1463 | CG5961-RB | 56..1385 | 16..1345 | 6650 | 100 | Plus |
CG5961-RC | 1653 | CG5961-RC | 246..1575 | 16..1345 | 6650 | 100 | Plus |
CG5961-RA | 1658 | CG5961-RA | 251..1580 | 16..1345 | 6650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12459200..12459889 | 705..16 | 3450 | 100 | Minus |
3R | 32079331 | 3R | 12458499..12459138 | 1345..706 | 3200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:52:34 has no hits.
BS08875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:43 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:47 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 248..1580 | 16..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:56 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 252..1580 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:43 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 248..1580 | 16..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:26 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5961-RA | 252..1580 | 17..1345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:26 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12458499..12459138 | 706..1345 | 100 | <- | Minus |
3R | 12459200..12459888 | 17..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:56 Download gff for
BS08875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8284221..8284860 | 706..1345 | 100 | <- | Minus |
arm_3R | 8284922..8285610 | 17..705 | 100 | | Minus |
BS08875.pep Sequence
Translation from 16 to 1344
> BS08875.pep
MSDVDSDGEEPTRKTGTNALDEFRENWQRELQEHTTNTGSRSHSEAGDRL
TAANSNLSEADLLQAKAESLYRTAVQLEQRGKVYDALPFYRKATQIVPDI
EFRFYEQQKQKLSNDVSKKYLNLANDLAKQLDLGQSDGEEVVDNLYEKFQ
HDLRQKNIYNGKMIASSRDANVLTTGLHFADLPPEIVMRILRWVVSAQLD
MRSLEQCAAVCKGFYVYARDEELWRLACVKVWGHNVGTLEAQDSDVSNVF
HSWRDMFIRRDRVLFNGCYISKTTYLRMGENSFQDQFYRPVQLVEYYRYI
RFLPDGKVLMMTTADEPAQGVSKLKHVNNVRAEMLRGRYRLFGSTVTLVL
QKSQQRGPANVRQRRGSIMPVDEDSSQFLIELRIAGTTKRRCAQLVWSHY
TLVQKRNKVDISSEFDLTEAKYPALRFSTVKSYHLDADAPLA*
BS08875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5961-PB | 442 | CG5961-PB | 1..442 | 1..442 | 2291 | 100 | Plus |
CG5961-PC | 442 | CG5961-PC | 1..442 | 1..442 | 2291 | 100 | Plus |
CG5961-PA | 442 | CG5961-PA | 1..442 | 1..442 | 2291 | 100 | Plus |