Clone BS08875 Report

Search the DGRC for BS08875

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG5961-RA
Protein status:BS08875.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08875.3prime Sequence

943 bp (757 high quality bases) assembled on 2006-01-18

> BS08875.3prime
ATGGTCTAGAAAGCTTCTAAGCCAATGGTGCATCAGCATCAAGATGGTAG
CTCTTTACGGTTGAGAACCTCAGCGCCGGATATTTGGCCTCGGTCAAATC
GAACTCGGAGCTGATGTCCACCTTGTTGCGCTTCTGCACGAGCGTGTAAT
GTGACCAAACCAACTGGGCGCATCGGCGCTTGGTGGTGCCTGCGATGCGC
AGCTCGATCAGGAACTGTGAGGAGTCCTCATCCACTGGCATGATACTCCC
TCGCCTCTGCCGCACGTTAGCCGGCCCTCGCTGCTGCGACTTTTGCAGCA
CCAGAGTGACTGTGCTCCCGAAGAGACGATAGCGACCCCGAAGCATTTCC
GCCCGTACGTTGTTCACGTGCTTCAGTTTGGATACACCTTGCGCCGGCTC
ATCGGCAGTCGTCATCATCAGCACCTTGCCATCGGGCAGAAAGCGAATGT
AGCGATAGTACTCCACCAGTTGCACAGGACGGTAGAACTGATCCTGGAAG
CTGTTCTCGCCCATTCTCAGGTACGTAGTCTTGCTGATGTAGCAGCCGTT
GAAAAGAACTCGGTCTCGGCGGATGAACATGTCTCGCCAGGAGTGGAACA
CGTTGCTTACATCCGAATCCTGGGCCTCTAGAGTTCCAACGTTGTGGCCC
CATACTTTGACACAAGCTAGCCTCCAGAGCTCCTCATCCCGCGCGTAGAC
ATAGAAACCTTTGCAAACAGCAGCGCACTGCTCTAGCGAGCGCATGTCCA
GTTGGGCGGAAACCACCCAGCGCAGGATGCGCATCACAATCTCGGGCGGC
AGGTCGGCAAAGTGCAGACCGGTGGTCAGGACATTGGCATCACGGCTGGA
TGCTATCATCTTGCCATTTGTAATGTTTTTCTGACGCAAATCATGCTGGA
ACTTTTCGTACAGGTTGTCCACGACCTCCTCCCCCATCGACTG

BS08875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-PA 1329 CG5961-RA 478..1329 868..17 4260 100 Minus
CG5961-PA 1329 CG5961-RA 412..474 934..872 315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-RB 1463 CG5961-RB 468..1385 934..17 4545 99.8 Minus
CG5961-RC 1653 CG5961-RC 658..1575 934..17 4545 99.8 Minus
CG5961-RA 1658 CG5961-RA 663..1580 934..17 4545 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12458499..12459138 17..656 3200 100 Plus
3R 32079331 3R 12459200..12459477 657..934 1345 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:10:30 has no hits.

BS08875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:40 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-PA 403..1329 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:34 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-PA 403..1329 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:47 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 654..1583 11..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:06 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 654..1583 11..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:06 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12458496..12459138 11..656 99 <- Plus
3R 12459200..12459486 657..943 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:47 Download gff for BS08875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8284218..8284860 11..656 99 <- Plus
arm_3R 8284922..8285208 657..943 98   Plus

BS08875.5prime Sequence

808 bp (807 high quality bases) assembled on 2006-01-18

> BS08875.5prime
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTT

BS08875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-PA 1329 CG5961-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-RB 1463 CG5961-RB 56..848 16..808 3965 100 Plus
CG5961-RC 1653 CG5961-RC 246..1038 16..808 3965 100 Plus
CG5961-RA 1658 CG5961-RA 251..1043 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12459200..12459889 705..16 3450 100 Minus
3R 32079331 3R 12459036..12459138 808..706 515 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:22:10 has no hits.

BS08875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:42 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:36 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:03 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 251..1043 16..808 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:14 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 251..1043 16..808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:14 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12459036..12459138 706..808 100 <- Minus
3R 12459200..12459889 16..705 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:03 Download gff for BS08875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8284758..8284860 706..808 100 <- Minus
arm_3R 8284922..8285611 16..705 100   Minus

BS08875.complete Sequence

1361 bp (1361 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636307

> BS08875.complete
GAAGTTATCAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAA
CCCGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAG
CGGGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGA
GGCTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATC
TACTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAG
CAGCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCA
AATCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGC
TCAGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCC
AAGCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCT
GTACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCA
AGATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCAC
TTTGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGT
TTCCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCA
AAGGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGT
GTCAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGA
TGTAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACC
GAGTTCTTTTCAACGGCTGCTACATCAGCAAGACTACGTACCTGAGAATG
GGCGAGAACAGCTTCCAGGATCAGTTCTACCGTCCTGTGCAACTGGTGGA
GTACTATCGCTACATTCGCTTTCTGCCCGATGGCAAGGTGCTGATGATGA
CGACTGCCGATGAGCCGGCGCAAGGTGTATCCAAACTGAAGCACGTGAAC
AACGTACGGGCGGAAATGCTTCGGGGTCGCTATCGTCTCTTCGGGAGCAC
AGTCACTCTGGTGCTGCAAAAGTCGCAGCAGCGAGGGCCGGCTAACGTGC
GGCAGAGGCGAGGGAGTATCATGCCAGTGGATGAGGACTCCTCACAGTTC
CTGATCGAGCTGCGCATCGCAGGCACCACCAAGCGCCGATGCGCCCAGTT
GGTTTGGTCACATTACACGCTCGTGCAGAAGCGCAACAAGGTGGACATCA
GCTCCGAGTTCGATTTGACCGAGGCCAAATATCCGGCGCTGAGGTTCTCA
ACCGTAAAGAGCTACCATCTTGATGCTGATGCACCATTGGCTTAGAAGCT
TTCTAGACCAT

BS08875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-RB 1329 CG5961-PB 1..1329 17..1345 6645 100 Plus
CG5961-RC 1329 CG5961-PC 1..1329 17..1345 6645 100 Plus
CG5961-RA 1329 CG5961-PA 1..1329 17..1345 6645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-RB 1463 CG5961-RB 56..1385 16..1345 6650 100 Plus
CG5961-RC 1653 CG5961-RC 246..1575 16..1345 6650 100 Plus
CG5961-RA 1658 CG5961-RA 251..1580 16..1345 6650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12459200..12459889 705..16 3450 100 Minus
3R 32079331 3R 12458499..12459138 1345..706 3200 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:52:34 has no hits.

BS08875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:43 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 1..1329 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:47 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 248..1580 16..1351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:56 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 252..1580 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:43 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 248..1580 16..1351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:26 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 252..1580 17..1345 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:26 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12458499..12459138 706..1345 100 <- Minus
3R 12459200..12459888 17..705 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:56 Download gff for BS08875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8284221..8284860 706..1345 100 <- Minus
arm_3R 8284922..8285610 17..705 100   Minus

BS08875.pep Sequence

Translation from 16 to 1344

> BS08875.pep
MSDVDSDGEEPTRKTGTNALDEFRENWQRELQEHTTNTGSRSHSEAGDRL
TAANSNLSEADLLQAKAESLYRTAVQLEQRGKVYDALPFYRKATQIVPDI
EFRFYEQQKQKLSNDVSKKYLNLANDLAKQLDLGQSDGEEVVDNLYEKFQ
HDLRQKNIYNGKMIASSRDANVLTTGLHFADLPPEIVMRILRWVVSAQLD
MRSLEQCAAVCKGFYVYARDEELWRLACVKVWGHNVGTLEAQDSDVSNVF
HSWRDMFIRRDRVLFNGCYISKTTYLRMGENSFQDQFYRPVQLVEYYRYI
RFLPDGKVLMMTTADEPAQGVSKLKHVNNVRAEMLRGRYRLFGSTVTLVL
QKSQQRGPANVRQRRGSIMPVDEDSSQFLIELRIAGTTKRRCAQLVWSHY
TLVQKRNKVDISSEFDLTEAKYPALRFSTVKSYHLDADAPLA*

BS08875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-PB 442 CG5961-PB 1..442 1..442 2291 100 Plus
CG5961-PC 442 CG5961-PC 1..442 1..442 2291 100 Plus
CG5961-PA 442 CG5961-PA 1..442 1..442 2291 100 Plus