Clone BS08878 Report

Search the DGRC for BS08878

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptSec22-RA
Protein status:BS08878.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08878.3prime Sequence

666 bp (665 high quality bases) assembled on 2006-01-18

> BS08878.3prime
ATGGTCTAGAAAGCTTTTACAGAACCCAGAAATACATGATGAACACTAGA
AGTATCATGCCCAAGGCCATCGCCTTCACGTACATGGACTTTCGGTTGAG
CAGCTTGGCGTCCTTCTTGTACTTCTGTGACATCATCGATAGGTTCTGGG
TCTTGGTGTCGAGTTCCGCCAGCACTGTGCCACGTTGGAGCACGTCGTCA
ATGTTTTGCACCATGATGCGCTGCACATCCTGCAGCTGTGTGTTGATGTT
GCTGATGTTGCGTCTGCGGTCCGTCAACTGTTTTTTCGCCTTCTGTATGT
ACACGTCAAACTCGATGAATGCGTATGGGCGAGTCACTGAGTTTACTCGC
CGGCCGTAGTTAGCATGGAACTCCTGGGCCAGGTCCTCCAGGTAATTGAA
GGCCAGTCGCTTTGAGTACATCTTGTCCACCATCACCAGGTAGCAGACGT
CGTTCTCGATTAGGTAGTGGAATAGGTAGGGTCCGGTCTCGATACTGCAT
CGAGCCGGGGAGTGGGTACCCAGCTTGCGGAAGAGCATCTTAGCCTGGTT
TTGGTAGTCCAGTATGCTGCGTCCGCTCTGCTCGTCATCCTGCATGGTCC
CCACCAGAGGAAGGCCATCGATGACCCTGGCTATCATGGTCAGCAGCGCC
ATGTCGACTGATAACT

BS08878.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7359-PA 636 CG7359-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1045 653..17 3185 100 Minus
Sec22-RB 1749 CG7359-RB 409..1051 653..17 3115 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 467..166 1510 100 Minus
X 23542271 X 807353..807502 166..17 750 100 Minus
X 23542271 X 806630..806742 580..468 565 100 Minus
X 23542271 X 806484..806559 653..578 380 100 Minus
Blast to na_te.dros performed 2015-02-08 13:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 287..241 111 72.9 Minus

BS08878.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:47 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:44 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:50:51 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 17..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:06 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 17..660 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:06 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
X 806633..806742 468..577 100 -> Minus
X 806477..806559 578..660 96 -> Minus
X 806969..807270 166..467 100 -> Minus
X 807354..807502 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:50:51 Download gff for BS08878.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 701002..701303 166..467 100 -> Minus
arm_X 700510..700592 578..660 96 -> Minus
arm_X 700666..700775 468..577 100 -> Minus
arm_X 701387..701535 17..165 100   Minus

BS08878.5prime Sequence

666 bp (665 high quality bases) assembled on 2006-01-18

> BS08878.5prime
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGT
AAAAGCTTTCTAGACC

BS08878.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7359-PA 636 CG7359-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1045 16..652 3185 100 Plus
Sec22-RB 1749 CG7359-RB 409..1051 16..652 3115 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 202..503 1510 100 Plus
X 23542271 X 807353..807502 503..652 750 100 Plus
X 23542271 X 806630..806742 89..201 565 100 Plus
X 23542271 X 806484..806559 16..91 380 100 Plus
Blast to na_te.dros performed 2015-02-13 02:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 382..428 111 72.9 Plus

BS08878.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:48 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:45 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7359-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:16:43 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:46 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 402..1045 9..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:46 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
X 806477..806559 9..91 96 -> Plus
X 806633..806742 92..201 100 -> Plus
X 806969..807270 202..503 100 -> Plus
X 807354..807502 504..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:16:43 Download gff for BS08878.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 700510..700592 9..91 96 -> Plus
arm_X 700666..700775 92..201 100 -> Plus
arm_X 701002..701303 202..503 100 -> Plus
arm_X 701387..701535 504..652 100   Plus

BS08878.complete Sequence

668 bp (668 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636308

> BS08878.complete
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGT
AAAAGCTTTCTAGACCAT

BS08878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 636 CG7359-PA 1..636 17..652 3180 100 Plus
Sec22-RB 642 CG7359-PB 1..642 17..652 3085 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1743 CG7359-RA 409..1045 16..652 3185 100 Plus
Sec22-RB 1749 CG7359-RB 409..1051 16..652 3090 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 806969..807270 202..503 1510 100 Plus
X 23542271 X 807353..807502 503..652 750 100 Plus
X 23542271 X 806630..806742 89..201 565 100 Plus
X 23542271 X 806484..806559 16..91 380 100 Plus
Blast to na_te.dros performed 2014-11-27 20:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2665 382..428 111 72.9 Plus

BS08878.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:44 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:48 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 406..1049 9..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:42 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 410..1043 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:45 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 406..1049 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:54 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 410..1043 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:54 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
X 807354..807500 504..650 100   Plus
X 806633..806742 92..201 100 -> Plus
X 806969..807270 202..503 100 -> Plus
X 806485..806559 17..91 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:42 Download gff for BS08878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 700518..700592 17..91 100 -> Plus
arm_X 700666..700775 92..201 100 -> Plus
arm_X 701002..701303 202..503 100 -> Plus
arm_X 701387..701533 504..650 100   Plus

BS08878.pep Sequence

Translation from 16 to 651

> BS08878.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVL*

BS08878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-PA 211 CG7359-PA 1..211 1..211 1075 100 Plus
Sec22-PB 213 CG7359-PB 1..213 1..211 1062 99.1 Plus
Vamp7-PC 218 CG1599-PC 35..202 43..207 191 28.4 Plus
Vamp7-PA 218 CG1599-PA 35..202 43..207 191 28.4 Plus