Clone Sequence Records
BS08878.3prime Sequence
666 bp (665 high quality bases) assembled on 2006-01-18
> BS08878.3prime
ATGGTCTAGAAAGCTTTTACAGAACCCAGAAATACATGATGAACACTAGA
AGTATCATGCCCAAGGCCATCGCCTTCACGTACATGGACTTTCGGTTGAG
CAGCTTGGCGTCCTTCTTGTACTTCTGTGACATCATCGATAGGTTCTGGG
TCTTGGTGTCGAGTTCCGCCAGCACTGTGCCACGTTGGAGCACGTCGTCA
ATGTTTTGCACCATGATGCGCTGCACATCCTGCAGCTGTGTGTTGATGTT
GCTGATGTTGCGTCTGCGGTCCGTCAACTGTTTTTTCGCCTTCTGTATGT
ACACGTCAAACTCGATGAATGCGTATGGGCGAGTCACTGAGTTTACTCGC
CGGCCGTAGTTAGCATGGAACTCCTGGGCCAGGTCCTCCAGGTAATTGAA
GGCCAGTCGCTTTGAGTACATCTTGTCCACCATCACCAGGTAGCAGACGT
CGTTCTCGATTAGGTAGTGGAATAGGTAGGGTCCGGTCTCGATACTGCAT
CGAGCCGGGGAGTGGGTACCCAGCTTGCGGAAGAGCATCTTAGCCTGGTT
TTGGTAGTCCAGTATGCTGCGTCCGCTCTGCTCGTCATCCTGCATGGTCC
CCACCAGAGGAAGGCCATCGATGACCCTGGCTATCATGGTCAGCAGCGCC
ATGTCGACTGATAACT
BS08878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1045 | 653..17 | 3185 | 100 | Minus |
Sec22-RB | 1749 | CG7359-RB | 409..1051 | 653..17 | 3115 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 467..166 | 1510 | 100 | Minus |
X | 23542271 | X | 807353..807502 | 166..17 | 750 | 100 | Minus |
X | 23542271 | X | 806630..806742 | 580..468 | 565 | 100 | Minus |
X | 23542271 | X | 806484..806559 | 653..578 | 380 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 13:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 287..241 | 111 | 72.9 | Minus |
BS08878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:47 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:44 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:50:51 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 17..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:06 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 17..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:06 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806633..806742 | 468..577 | 100 | -> | Minus |
X | 806477..806559 | 578..660 | 96 | -> | Minus |
X | 806969..807270 | 166..467 | 100 | -> | Minus |
X | 807354..807502 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:50:51 Download gff for
BS08878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 701002..701303 | 166..467 | 100 | -> | Minus |
arm_X | 700510..700592 | 578..660 | 96 | -> | Minus |
arm_X | 700666..700775 | 468..577 | 100 | -> | Minus |
arm_X | 701387..701535 | 17..165 | 100 | | Minus |
BS08878.5prime Sequence
666 bp (665 high quality bases) assembled on 2006-01-18
> BS08878.5prime
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGT
AAAAGCTTTCTAGACC
BS08878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7359-PA | 636 | CG7359-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1045 | 16..652 | 3185 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 409..1051 | 16..652 | 3115 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807502 | 503..652 | 750 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806484..806559 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BS08878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:48 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:45 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:16:43 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:46 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 402..1045 | 9..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:46 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 806477..806559 | 9..91 | 96 | -> | Plus |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 807354..807502 | 504..652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:16:43 Download gff for
BS08878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700510..700592 | 9..91 | 96 | -> | Plus |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701535 | 504..652 | 100 | | Plus |
BS08878.complete Sequence
668 bp (668 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636308
> BS08878.complete
GAAGTTATCAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCG
ATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGC
AGCATACTGGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGG
TACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCC
ACTACCTAATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATG
TACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTT
CCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCAT
TCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGAC
CGCAGACGCAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCG
CATCATGGTGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGG
CGGAACTCGACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTAC
AAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGAT
GGCCTTGGGCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGT
AAAAGCTTTCTAGACCAT
BS08878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 636 | CG7359-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Sec22-RB | 642 | CG7359-PB | 1..642 | 17..652 | 3085 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-RA | 1743 | CG7359-RA | 409..1045 | 16..652 | 3185 | 100 | Plus |
Sec22-RB | 1749 | CG7359-RB | 409..1051 | 16..652 | 3090 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 806969..807270 | 202..503 | 1510 | 100 | Plus |
X | 23542271 | X | 807353..807502 | 503..652 | 750 | 100 | Plus |
X | 23542271 | X | 806630..806742 | 89..201 | 565 | 100 | Plus |
X | 23542271 | X | 806484..806559 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 382..428 | 111 | 72.9 | Plus |
BS08878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:44 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:48 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 406..1049 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:42 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1043 | 17..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:45 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7359-RA | 406..1049 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:54 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec22-RA | 410..1043 | 17..650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:54 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 807354..807500 | 504..650 | 100 | | Plus |
X | 806633..806742 | 92..201 | 100 | -> | Plus |
X | 806969..807270 | 202..503 | 100 | -> | Plus |
X | 806485..806559 | 17..91 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:42 Download gff for
BS08878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 700518..700592 | 17..91 | 100 | -> | Plus |
arm_X | 700666..700775 | 92..201 | 100 | -> | Plus |
arm_X | 701002..701303 | 202..503 | 100 | -> | Plus |
arm_X | 701387..701533 | 504..650 | 100 | | Plus |
BS08878.pep Sequence
Translation from 16 to 651
> BS08878.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVL*
BS08878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec22-PA | 211 | CG7359-PA | 1..211 | 1..211 | 1075 | 100 | Plus |
Sec22-PB | 213 | CG7359-PB | 1..213 | 1..211 | 1062 | 99.1 | Plus |
Vamp7-PC | 218 | CG1599-PC | 35..202 | 43..207 | 191 | 28.4 | Plus |
Vamp7-PA | 218 | CG1599-PA | 35..202 | 43..207 | 191 | 28.4 | Plus |