Clone Sequence Records
BS08879.3prime Sequence
924 bp (848 high quality bases) assembled on 2006-01-18
> BS08879.3prime
ATGGTCTAGAAAGCTTCTACGTGGTGTAGGTGCGGATGACGTCCCGGATC
ACCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTC
GATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCG
AGTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTG
CTCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGT
GCTATTGGCAATGGGCTCGATGTACTGGCTGCTGGTGGTGCTGATAAGGG
TGCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTGGCC
GTTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGCAGG
TGGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCTGGA
GAATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACTCCG
CCAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGAGGG
ATGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCGACT
CGGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGACGAG
CTGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCATGTT
GGGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGACAT
CCAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACCACA
GCTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCACGAA
GAAGGCAATCTCATCGCCGCGCTGAGGAGCAGCTGCAATATCCTTGCTCA
CCACCCAGTACTCGGGGCGATCGA
BS08879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11988-PD | 2016 | neur-RD | 1109..2016 | 924..17 | 4540 | 100 | Minus |
| CG11988-PB | 2262 | neur-RB | 1355..2262 | 924..17 | 4540 | 100 | Minus |
| CG11988-PC | 2019 | neur-RC | 1109..1768 | 924..265 | 3300 | 100 | Minus |
| CG11988-PA | 2265 | neur-RA | 1355..2014 | 924..265 | 3300 | 100 | Minus |
| CG11988-PC | 2019 | neur-RC | 1769..2019 | 267..17 | 1255 | 100 | Minus |
| CG11988-PA | 2265 | neur-RA | 2015..2265 | 267..17 | 1255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 3989 | CG11988-RB | 1637..2546 | 924..15 | 4550 | 100 | Minus |
| neur-RD | 3753 | CG11988-RD | 1401..2310 | 924..15 | 4550 | 100 | Minus |
| neur-RE | 3381 | CG11988-RE | 1401..2313 | 924..15 | 4510 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9022104..9022762 | 266..924 | 3295 | 100 | Plus |
| 3R | 32079331 | 3R | 9021791..9022043 | 15..267 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:53 has no hits.
BS08879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:49 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-PD | 1110..2016 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:46 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11988-PB | 1356..2262 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:55 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RD | 1402..2310 | 15..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:54 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RD | 1402..2310 | 15..923 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:54 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9021791..9022041 | 15..265 | 100 | <- | Plus |
| 3R | 9022104..9022761 | 266..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:55 Download gff for
BS08879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4847513..4847763 | 15..265 | 100 | <- | Plus |
| arm_3R | 4847826..4848483 | 266..923 | 100 | | Plus |
BS08879.5prime Sequence
852 bp (832 high quality bases) assembled on 2006-01-18
> BS08879.5prime
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGTGCCC
GC
BS08879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11988-PA | 2265 | neur-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
| CG11988-PB | 2262 | neur-RB | 1..836 | 17..852 | 4180 | 100 | Plus |
| CG11988-PC | 2019 | neur-RC | 25..590 | 287..852 | 2830 | 100 | Plus |
| CG11988-PD | 2016 | neur-RD | 25..590 | 287..852 | 2830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 3989 | CG11988-RB | 282..1118 | 16..852 | 4185 | 100 | Plus |
| neur-RA | 3992 | CG11988-RA | 282..1118 | 16..852 | 4185 | 100 | Plus |
| neur-RE | 3381 | CG11988-RE | 317..882 | 287..852 | 2830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9023281..9023846 | 852..287 | 2830 | 100 | Minus |
| 3R | 32079331 | 3R | 9033179..9033450 | 287..16 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:31:01 has no hits.
BS08879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:50 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-PA | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:48 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11988-PB | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:57 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..1118 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:29 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..1118 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:29 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9023281..9023845 | 288..852 | 100 | <- | Minus |
| 3R | 9033179..9033456 | 9..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:57 Download gff for
BS08879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4849003..4849567 | 288..852 | 100 | <- | Minus |
| arm_3R | 4858901..4859178 | 9..287 | 98 | | Minus |
BS08879.complete Sequence
2294 bp assembled on 2008-08-15
GenBank Submission: KX801032
> BS08879.complete
GAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAACTATATGC
AGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAG
AATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGC
CATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCA
ACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATG
CACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACC
CTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCG
TACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGC
TTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCAT
CAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACG
GTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGA
ACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTG
GGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACT
ACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAG
AAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGT
GATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCA
TTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGTGCCC
GCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCT
GAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGACACA
CTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCTGCAA
TCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAACAGGC
GGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTACAATG
CCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCGGAAT
GTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTGACTT
CTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAGAAGC
TGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTTGGCT
TTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATTTGCC
CAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTGAGCA
AGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTTCGTG
GCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTGTGGT
GGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGATGTCT
ACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAACATG
GTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCTCGTC
CGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAGTCGA
TGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCCCTCG
CAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCGGAGT
CAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTCCAGA
TCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACCTGCT
AGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGGCCAC
GGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACCCTTA
TCAGCACCACCAGCAGCCAGTACATCGAGCCCATTGCCAATAGCACAAAT
AATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGAGCACCGA
TTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGACTCGGTGC
TGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCATCGAGCAG
TGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGGTGATCCG
GGACGTCATCCGCACCTACACCACGTAGAAGCTTTCTAGACCAT
BS08879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 2262 | CG11988-PB | 1..2262 | 17..2278 | 11310 | 100 | Plus |
| neur-RA | 2265 | CG11988-PA | 1..2265 | 17..2278 | 11245 | 99.9 | Plus |
| neur-RD | 2016 | CG11988-PD | 25..2016 | 287..2278 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 3989 | CG11988-RB | 282..2546 | 16..2280 | 11325 | 100 | Plus |
| neur-RA | 3992 | CG11988-RA | 282..2549 | 16..2280 | 11260 | 99.9 | Plus |
| neur-RD | 3753 | CG11988-RD | 317..2310 | 287..2280 | 9970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9022104..9023846 | 2029..287 | 8715 | 100 | Minus |
| 3R | 32079331 | 3R | 9033179..9033450 | 287..16 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 9021791..9022043 | 2280..2028 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:09 has no hits.
BS08879.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:27:18 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RB | 272..2542 | 9..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:37 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RB | 283..2544 | 17..2278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:37 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RB | 279..2540 | 17..2278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:56 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RB | 283..2544 | 17..2278 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:56 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9021793..9022041 | 2030..2278 | 100 | <- | Minus |
| 3R | 9022104..9023845 | 288..2029 | 100 | <- | Minus |
| 3R | 9033179..9033449 | 17..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:37 Download gff for
BS08879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4858901..4859171 | 17..287 | 100 | | Minus |
| arm_3R | 4847515..4847763 | 2030..2278 | 100 | <- | Minus |
| arm_3R | 4847826..4849567 | 288..2029 | 100 | <- | Minus |
BS08879.pep Sequence
Translation from 16 to 2277
> BS08879.pep
MGLSDIPANYMQGSHPHLTLHPQQQHHQNQQHLQHLQQMQQLHNAMPTPA
QQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFGLVRRSPSSCPG
PNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERIC
VKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALH
EQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG
NCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQQMPQPAANASSALNSHHP
HQQSRRSLPGHTAAIEHDLERHVMPSLQSLHLAGNGGSVASVEQAAIAHD
LANGLPPLRYNANGRLIPVPFHNTKGRNVRLSQDRFVASRTESDFCQGYV
FTARPIRIGEKLIVQVLKTEQMYVGALALGLTSCNPAMLQPNDLPNDSDF
LLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNGEVSISKNNGPAVVVMHVD
QSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYPSQPQVNVNASSSSACNAA
STSRMLPMTESMSSLNAGATAKLLHHPSQLSVAQSTSTLASAGGVNGSRM
ISMPSNGDILQIQPNGGGTVLVVNLPPASSSHDINGQLAARPTATVTSSG
VLAGACSSGTLISTTSSQYIEPIANSTNNAANKWKDSLSDQQSTDSSAEC
TICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRT
YTT*
BS08879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-PB | 753 | CG11988-PB | 1..753 | 1..753 | 3955 | 100 | Plus |
| neur-PA | 754 | CG11988-PA | 1..754 | 1..753 | 3943 | 99.9 | Plus |
| neur-PD | 671 | CG11988-PD | 8..671 | 90..753 | 3486 | 99.8 | Plus |
| neur-PE | 672 | CG11988-PE | 8..672 | 90..753 | 3474 | 99.7 | Plus |
| neur-PC | 672 | CG11988-PC | 8..672 | 90..753 | 3474 | 99.7 | Plus |
