Clone BS08883 Report

Search the DGRC for BS08883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptStim-RA
Protein status:BS08883.pep: full length peptide match
Sequenced Size:1745

Clone Sequence Records

BS08883.3prime Sequence

989 bp (877 high quality bases) assembled on 2006-01-18

> BS08883.3prime
ATGGTCTAGAAAGCTTTTATTCCGTGGCAAGCAGCGAAAAGTTCTCAAAA
TTCAGCTTACCTTGTATGGACTCATCGTCCAGGTCTTCGGTGCTGTTGGT
AATACGTGCTCTAGAACCCTTGGTTGAACTCATGCCCATGGAACTTTGTA
AGCCCCCATTTCGACCGTACAGAACATTCTCCAAGTAGGGCAGACCATTG
TTGTTCACAATGTTTAAGCCAAGGCACGTCTCGATTTGCTTCCAGCGATG
CAGTCGTTCTTGCAGCTCGTTTGTTACATCTCCGAGGGCATTCCGTGCCT
CAACAATCGACCGATCCACATCATCAATACTCTTTCCGTGCGTGGAAACG
AACGCACCCACCAAACTTGACCGTTTCTTACGCAATTTCTCACAAGCCTC
TCTGGCCGACTGTAGCTGCTTCTCAGCCGACGTGCGCTTCTTCTGATGAT
TCTTACTTTCTAGTTCATATGTGTATTGAAGCCATGATTGCAGTTGTGGC
GGCGGTGACCAGCAGTTGTCTACTAGCTCGAATTCGGCGCGGGACAATTC
GTTGCGCAACATCTCGATTTCCTTTTTCAGCTGCTGAACTTCCAAATCCG
AGTTCGATGAACTGAGAGTGGGCGCTTCTTTTAGACGACGCTCCAAATCT
AGTTTTTCTGTTGCCACATTTTCCTGCTCCATTCTGGCCCGTTCTAGTTC
CTTCTGCATCTCCTGTAGACTTTGCTCAGCCCTCTGCAATCCCTCCATAT
CCTGGGCCATTCGACGCAGATGCCGTTTGGCATTCTTATTTTGCTGATAG
GCGTACCAACAACCAATAATAGCACTAAGCAACAGTGTTACCAATATGTA
GTCTTTCCAGCGGGTACCAGTTTCTCGCGGTGGCCCAACAGAACCACATC
CATTGCCTTCAATGAGATTTTTTTGTTTGTGTATAGGGTCTTTGATGCCC
AGTACATTGCCAACATACTGAAGATTATTCACAGGCCAA

BS08883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9126-PB 1365 Stim-RB 494..1365 888..17 4360 100 Minus
CG9126-PC 1434 Stim-RC 563..1434 888..17 4360 100 Minus
CG9126-PA 1713 Stim-RA 842..1713 888..17 4360 100 Minus
CG9126-PB 1365 Stim-RB 398..463 984..919 305 98.4 Minus
CG9126-PC 1434 Stim-RC 467..532 984..919 305 98.4 Minus
CG9126-PA 1713 Stim-RA 746..811 984..919 305 98.4 Minus
CG9126-PB 1365 Stim-RB 458..494 923..887 185 100 Minus
CG9126-PC 1434 Stim-RC 527..563 923..887 185 100 Minus
CG9126-PA 1713 Stim-RA 806..842 923..887 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RF 2319 CG9126-RF 1002..1969 984..17 4780 99.7 Minus
Stim-RA 2255 CG9126-RA 938..1905 984..17 4780 99.7 Minus
Stim-RD 2141 CG9126-RD 938..1863 984..59 4570 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 109..702 2970 100 Plus
X 23542271 X 15936075..15936250 700..875 880 100 Plus
X 23542271 X 15935251..15935344 17..110 470 100 Plus
X 23542271 X 15936319..15936429 874..984 445 97.3 Plus
Blast to na_te.dros performed on 2015-02-11 11:09:09 has no hits.

BS08883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:58 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-PB 396..1365 17..987 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:58 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9126-PB 396..1365 17..987 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:27 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 936..1910 11..987 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:12 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 936..1910 11..987 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:12 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15936076..15936248 701..873 100 <- Plus
X 15936319..15936431 874..987 96   Plus
X 15935246..15935342 11..108 97 <- Plus
X 15935417..15936008 109..700 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:27 Download gff for BS08883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15829279..15829375 11..108 97 <- Plus
arm_X 15829450..15830041 109..700 100 <- Plus
arm_X 15830109..15830281 701..873 100 <- Plus
arm_X 15830352..15830464 874..987 96   Plus

BS08883.5prime Sequence

916 bp (820 high quality bases) assembled on 2006-01-18

> BS08883.5prime
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCACCGCGAGAAACTGGTACCCGCTANAAAGACTACATA
TTGGGTACACTGGTGC

BS08883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9126-PA 1713 Stim-RA 1..847 17..863 4235 100 Plus
CG9126-PC 1434 Stim-RC 64..568 359..863 2525 100 Plus
CG9126-PB 1365 Stim-RB 1..499 365..863 2495 100 Plus
CG9126-PC 1434 Stim-RC 1..66 17..82 330 100 Plus
CG9126-PA 1713 Stim-RA 848..889 863..904 166 95.2 Plus
CG9126-PC 1434 Stim-RC 569..610 863..904 166 95.2 Plus
CG9126-PB 1365 Stim-RB 500..541 863..904 166 95.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RD 2141 CG9126-RD 193..1093 17..916 4409 99.3 Plus
Stim-RA 2255 CG9126-RA 193..1093 17..916 4409 99.3 Plus
Stim-RF 2319 CG9126-RF 600..1157 360..916 2694 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15938756..15939100 361..17 1725 100 Minus
X 23542271 X 15936792..15937031 763..524 1170 99.2 Minus
X 23542271 X 15937591..15937754 523..360 820 100 Minus
X 23542271 X 15936328..15936436 863..755 545 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:44:22 has no hits.

BS08883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:58 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:00 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9126-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:45 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 185..1093 8..916 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:09 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 185..1093 8..916 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:09 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15936319..15936434 757..871 99 <- Minus
X 15936799..15937031 524..756 100 <- Minus
X 15937591..15937754 360..523 100 <- Minus
X 15938758..15939108 8..359 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:45 Download gff for BS08883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15830352..15830467 757..871 99 <- Minus
arm_X 15830832..15831064 524..756 100 <- Minus
arm_X 15831624..15831787 360..523 100 <- Minus
arm_X 15832791..15833141 8..359 98   Minus

BS08883.complete Sequence

1745 bp assembled on 2008-08-14

GenBank Submission: FJ636309

> BS08883.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTAAGCTGAATTTTG
AGAACTTTTCGCTGCTTGCCACGGAATAAAAGCTTTCTAGACCAT

BS08883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RA 1713 CG9126-PA 1..1713 17..1729 8565 100 Plus
Stim-RD 1686 CG9126-PD 1..1671 17..1687 8355 100 Plus
Stim-RF 354 CG9126-PF 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RA 2255 CG9126-RA 193..1905 17..1729 8565 100 Plus
Stim-RD 2141 CG9126-RD 193..1863 17..1687 8355 100 Plus
Stim-RF 2319 CG9126-RF 600..1969 360..1729 6850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 1637..1044 2970 100 Minus
X 23542271 X 15938756..15939100 361..17 1725 100 Minus
X 23542271 X 15936792..15937031 763..524 1170 99.2 Minus
X 23542271 X 15936075..15936250 1046..871 880 100 Minus
X 23542271 X 15937591..15937754 523..360 820 100 Minus
X 23542271 X 15936319..15936436 872..755 590 100 Minus
X 23542271 X 15935251..15935344 1729..1636 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:02:31 has no hits.

BS08883.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:59 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 169..1894 8..1735 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:22 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 193..1903 17..1727 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:30 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 177..1887 17..1727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:21 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 193..1903 17..1727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:21 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
X 15935253..15935342 1638..1727 100 <- Minus
X 15935417..15936008 1046..1637 100 <- Minus
X 15936076..15936248 873..1045 100 <- Minus
X 15936319..15936434 757..872 100 <- Minus
X 15936799..15937031 524..756 100 <- Minus
X 15937591..15937754 360..523 100 <- Minus
X 15938758..15939100 17..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:22 Download gff for BS08883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15830352..15830467 757..872 100 <- Minus
arm_X 15830832..15831064 524..756 100 <- Minus
arm_X 15829286..15829375 1638..1727 100 <- Minus
arm_X 15829450..15830041 1046..1637 100 <- Minus
arm_X 15830109..15830281 873..1045 100 <- Minus
arm_X 15831624..15831787 360..523 100 <- Minus
arm_X 15832791..15833133 17..359 100   Minus

BS08883.pep Sequence

Translation from 16 to 1728

> BS08883.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATE*

BS08883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PA 570 CG9126-PA 1..570 1..570 2971 100 Plus
Stim-PD 561 CG9126-PD 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus