Clone Sequence Records
BS08883.3prime Sequence
989 bp (877 high quality bases) assembled on 2006-01-18
> BS08883.3prime
ATGGTCTAGAAAGCTTTTATTCCGTGGCAAGCAGCGAAAAGTTCTCAAAA
TTCAGCTTACCTTGTATGGACTCATCGTCCAGGTCTTCGGTGCTGTTGGT
AATACGTGCTCTAGAACCCTTGGTTGAACTCATGCCCATGGAACTTTGTA
AGCCCCCATTTCGACCGTACAGAACATTCTCCAAGTAGGGCAGACCATTG
TTGTTCACAATGTTTAAGCCAAGGCACGTCTCGATTTGCTTCCAGCGATG
CAGTCGTTCTTGCAGCTCGTTTGTTACATCTCCGAGGGCATTCCGTGCCT
CAACAATCGACCGATCCACATCATCAATACTCTTTCCGTGCGTGGAAACG
AACGCACCCACCAAACTTGACCGTTTCTTACGCAATTTCTCACAAGCCTC
TCTGGCCGACTGTAGCTGCTTCTCAGCCGACGTGCGCTTCTTCTGATGAT
TCTTACTTTCTAGTTCATATGTGTATTGAAGCCATGATTGCAGTTGTGGC
GGCGGTGACCAGCAGTTGTCTACTAGCTCGAATTCGGCGCGGGACAATTC
GTTGCGCAACATCTCGATTTCCTTTTTCAGCTGCTGAACTTCCAAATCCG
AGTTCGATGAACTGAGAGTGGGCGCTTCTTTTAGACGACGCTCCAAATCT
AGTTTTTCTGTTGCCACATTTTCCTGCTCCATTCTGGCCCGTTCTAGTTC
CTTCTGCATCTCCTGTAGACTTTGCTCAGCCCTCTGCAATCCCTCCATAT
CCTGGGCCATTCGACGCAGATGCCGTTTGGCATTCTTATTTTGCTGATAG
GCGTACCAACAACCAATAATAGCACTAAGCAACAGTGTTACCAATATGTA
GTCTTTCCAGCGGGTACCAGTTTCTCGCGGTGGCCCAACAGAACCACATC
CATTGCCTTCAATGAGATTTTTTTGTTTGTGTATAGGGTCTTTGATGCCC
AGTACATTGCCAACATACTGAAGATTATTCACAGGCCAA
BS08883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9126-PB | 1365 | Stim-RB | 494..1365 | 888..17 | 4360 | 100 | Minus |
CG9126-PC | 1434 | Stim-RC | 563..1434 | 888..17 | 4360 | 100 | Minus |
CG9126-PA | 1713 | Stim-RA | 842..1713 | 888..17 | 4360 | 100 | Minus |
CG9126-PB | 1365 | Stim-RB | 398..463 | 984..919 | 305 | 98.4 | Minus |
CG9126-PC | 1434 | Stim-RC | 467..532 | 984..919 | 305 | 98.4 | Minus |
CG9126-PA | 1713 | Stim-RA | 746..811 | 984..919 | 305 | 98.4 | Minus |
CG9126-PB | 1365 | Stim-RB | 458..494 | 923..887 | 185 | 100 | Minus |
CG9126-PC | 1434 | Stim-RC | 527..563 | 923..887 | 185 | 100 | Minus |
CG9126-PA | 1713 | Stim-RA | 806..842 | 923..887 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RF | 2319 | CG9126-RF | 1002..1969 | 984..17 | 4780 | 99.7 | Minus |
Stim-RA | 2255 | CG9126-RA | 938..1905 | 984..17 | 4780 | 99.7 | Minus |
Stim-RD | 2141 | CG9126-RD | 938..1863 | 984..59 | 4570 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15935417..15936010 | 109..702 | 2970 | 100 | Plus |
X | 23542271 | X | 15936075..15936250 | 700..875 | 880 | 100 | Plus |
X | 23542271 | X | 15935251..15935344 | 17..110 | 470 | 100 | Plus |
X | 23542271 | X | 15936319..15936429 | 874..984 | 445 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:09:09 has no hits.
BS08883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:58 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-PB | 396..1365 | 17..987 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:56:58 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9126-PB | 396..1365 | 17..987 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:27 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 936..1910 | 11..987 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:12 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 936..1910 | 11..987 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:12 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15936076..15936248 | 701..873 | 100 | <- | Plus |
X | 15936319..15936431 | 874..987 | 96 | | Plus |
X | 15935246..15935342 | 11..108 | 97 | <- | Plus |
X | 15935417..15936008 | 109..700 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:27 Download gff for
BS08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15829279..15829375 | 11..108 | 97 | <- | Plus |
arm_X | 15829450..15830041 | 109..700 | 100 | <- | Plus |
arm_X | 15830109..15830281 | 701..873 | 100 | <- | Plus |
arm_X | 15830352..15830464 | 874..987 | 96 | | Plus |
BS08883.5prime Sequence
916 bp (820 high quality bases) assembled on 2006-01-18
> BS08883.5prime
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCACCGCGAGAAACTGGTACCCGCTANAAAGACTACATA
TTGGGTACACTGGTGC
BS08883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9126-PA | 1713 | Stim-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
CG9126-PC | 1434 | Stim-RC | 64..568 | 359..863 | 2525 | 100 | Plus |
CG9126-PB | 1365 | Stim-RB | 1..499 | 365..863 | 2495 | 100 | Plus |
CG9126-PC | 1434 | Stim-RC | 1..66 | 17..82 | 330 | 100 | Plus |
CG9126-PA | 1713 | Stim-RA | 848..889 | 863..904 | 166 | 95.2 | Plus |
CG9126-PC | 1434 | Stim-RC | 569..610 | 863..904 | 166 | 95.2 | Plus |
CG9126-PB | 1365 | Stim-RB | 500..541 | 863..904 | 166 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RD | 2141 | CG9126-RD | 193..1093 | 17..916 | 4409 | 99.3 | Plus |
Stim-RA | 2255 | CG9126-RA | 193..1093 | 17..916 | 4409 | 99.3 | Plus |
Stim-RF | 2319 | CG9126-RF | 600..1157 | 360..916 | 2694 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15938756..15939100 | 361..17 | 1725 | 100 | Minus |
X | 23542271 | X | 15936792..15937031 | 763..524 | 1170 | 99.2 | Minus |
X | 23542271 | X | 15937591..15937754 | 523..360 | 820 | 100 | Minus |
X | 23542271 | X | 15936328..15936436 | 863..755 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:44:22 has no hits.
BS08883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:58 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:00 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9126-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:45 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 185..1093 | 8..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:09 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 185..1093 | 8..916 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:09 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15936319..15936434 | 757..871 | 99 | <- | Minus |
X | 15936799..15937031 | 524..756 | 100 | <- | Minus |
X | 15937591..15937754 | 360..523 | 100 | <- | Minus |
X | 15938758..15939108 | 8..359 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:45 Download gff for
BS08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15830352..15830467 | 757..871 | 99 | <- | Minus |
arm_X | 15830832..15831064 | 524..756 | 100 | <- | Minus |
arm_X | 15831624..15831787 | 360..523 | 100 | <- | Minus |
arm_X | 15832791..15833141 | 8..359 | 98 | | Minus |
BS08883.complete Sequence
1745 bp assembled on 2008-08-14
GenBank Submission: FJ636309
> BS08883.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTAAGCTGAATTTTG
AGAACTTTTCGCTGCTTGCCACGGAATAAAAGCTTTCTAGACCAT
BS08883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RA | 1713 | CG9126-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Stim-RD | 1686 | CG9126-PD | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Stim-RF | 354 | CG9126-PF | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-RA | 2255 | CG9126-RA | 193..1905 | 17..1729 | 8565 | 100 | Plus |
Stim-RD | 2141 | CG9126-RD | 193..1863 | 17..1687 | 8355 | 100 | Plus |
Stim-RF | 2319 | CG9126-RF | 600..1969 | 360..1729 | 6850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15935417..15936010 | 1637..1044 | 2970 | 100 | Minus |
X | 23542271 | X | 15938756..15939100 | 361..17 | 1725 | 100 | Minus |
X | 23542271 | X | 15936792..15937031 | 763..524 | 1170 | 99.2 | Minus |
X | 23542271 | X | 15936075..15936250 | 1046..871 | 880 | 100 | Minus |
X | 23542271 | X | 15937591..15937754 | 523..360 | 820 | 100 | Minus |
X | 23542271 | X | 15936319..15936436 | 872..755 | 590 | 100 | Minus |
X | 23542271 | X | 15935251..15935344 | 1729..1636 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:02:31 has no hits.
BS08883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:59 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 169..1894 | 8..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:22 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 193..1903 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:30 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 177..1887 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:21 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Stim-RA | 193..1903 | 17..1727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:21 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15935253..15935342 | 1638..1727 | 100 | <- | Minus |
X | 15935417..15936008 | 1046..1637 | 100 | <- | Minus |
X | 15936076..15936248 | 873..1045 | 100 | <- | Minus |
X | 15936319..15936434 | 757..872 | 100 | <- | Minus |
X | 15936799..15937031 | 524..756 | 100 | <- | Minus |
X | 15937591..15937754 | 360..523 | 100 | <- | Minus |
X | 15938758..15939100 | 17..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:22 Download gff for
BS08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15830352..15830467 | 757..872 | 100 | <- | Minus |
arm_X | 15830832..15831064 | 524..756 | 100 | <- | Minus |
arm_X | 15829286..15829375 | 1638..1727 | 100 | <- | Minus |
arm_X | 15829450..15830041 | 1046..1637 | 100 | <- | Minus |
arm_X | 15830109..15830281 | 873..1045 | 100 | <- | Minus |
arm_X | 15831624..15831787 | 360..523 | 100 | <- | Minus |
arm_X | 15832791..15833133 | 17..359 | 100 | | Minus |
BS08883.pep Sequence
Translation from 16 to 1728
> BS08883.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATE*
BS08883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stim-PA | 570 | CG9126-PA | 1..570 | 1..570 | 2971 | 100 | Plus |
Stim-PD | 561 | CG9126-PD | 1..557 | 1..557 | 2907 | 100 | Plus |
Stim-PF | 117 | CG9126-PF | 1..117 | 1..117 | 617 | 99.1 | Plus |
Stim-PG | 117 | CG9126-PG | 1..117 | 1..117 | 617 | 99.1 | Plus |