Clone Sequence Records
BS08884.3prime Sequence
768 bp (767 high quality bases) assembled on 2006-01-18
> BS08884.3prime
ATGGTCTAGAAAGCTTCTAATACAGGCTTTCGGTATTTGAGGAGCGCGGC
TTCTTTAGCTTCTCGAGGTTCTTAATAACAATGTCGTGCAGCGAGGAGTA
GCGATTGCGGACCTCACAAACGACCAGCCACAAGCTGAGGTACTCCTTCT
CGTCAAGTTCGACGACTGCGCGCCGATAATCATCGATGTGCGGATACTTG
GCCACCTTGGACACCACCTTGGCGCGCGACAAGAAATAGCGCGATATCTG
GTCAAAGAAGGCGGCCGCCTCGGATTCCACAGTTTGAATTTCGGCAAGCG
TGTCCTCTTGAATGGAGACGCCAAAGTTGTTGCCATCCTCGATCTTGGGT
ATCATAAAGGAGATCCACATCTTAAGTAGATTGGAATCCTCCACAAGCTT
CCTGATGATAGGCTTGACGACCTTGATCATCTCGCAGAGCGGCTTGTTGC
ACGGCACTGTACCGGCGGGCAGACCCATGACAGGCTGCCCAGAGACGATG
ACATCCACGCGCTGGCGCTTGGTGGGCAGACTGTCACGATCCTCCAACTC
GTTTTTAACCAGGAGAGGCGGCAGGACCGGGATGTTGAGGTCCTGGTGCA
CTTCTTCGAAGTTGCGCTCGTTGAAGATCGGCGTGGCCAGCAGCTCGTTC
AGCCGGACGATATTCTCCGGGAACCCCTTGGTGATTAGCAGCTCTGCCTT
GAGGATCAACGAGTCCTTGTACTCCTGCACCTTTACCACAGTGTCGTTAG
GCATGTCGACTGATAACT
BS08884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1591-PA | 738 | REG-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..945 | 758..17 | 3695 | 99.9 | Minus |
REG-RA | 1370 | CG1591-RA | 177..918 | 758..17 | 3695 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 758..385 | 1855 | 99.7 | Minus |
X | 23542271 | X | 13213156..13213523 | 384..17 | 1840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:15 has no hits.
BS08884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:59 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:01 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1591-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:02 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 12..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:58 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 12..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:58 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212585..13212958 | 385..758 | 99 | -> | Minus |
X | 13213156..13213526 | 12..384 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:02 Download gff for
BS08884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106618..13106991 | 385..758 | 99 | -> | Minus |
arm_X | 13107189..13107559 | 12..384 | 99 | | Minus |
BS08884.5prime Sequence
768 bp (767 high quality bases) assembled on 2006-01-18
> BS08884.5prime
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TTAGAAGCTTTCTAGACC
BS08884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1591-PA | 738 | REG-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..945 | 13..754 | 3695 | 99.9 | Plus |
REG-RA | 1370 | CG1591-RA | 177..918 | 13..754 | 3695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 13..386 | 1855 | 99.7 | Plus |
X | 23542271 | X | 13213156..13213523 | 387..754 | 1840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:09:30 has no hits.
BS08884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:00 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:02 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1591-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:19 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 13..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:36:27 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 177..921 | 13..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:36:27 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212585..13212958 | 13..386 | 99 | -> | Plus |
X | 13213156..13213526 | 387..759 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:19 Download gff for
BS08884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106618..13106991 | 13..386 | 99 | -> | Plus |
arm_X | 13107189..13107559 | 387..759 | 99 | | Plus |
BS08884.complete Sequence
770 bp (770 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636310
> BS08884.complete
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TTAGAAGCTTTCTAGACCAT
BS08884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 738 | CG1591-PB | 1..738 | 17..754 | 3690 | 100 | Plus |
REG-RA | 738 | CG1591-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-RB | 1830 | CG1591-RB | 204..945 | 13..754 | 3695 | 99.9 | Plus |
REG-RA | 1370 | CG1591-RA | 177..918 | 13..754 | 3695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13212585..13212958 | 13..386 | 1855 | 99.7 | Plus |
X | 23542271 | X | 13213156..13213523 | 387..754 | 1840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:38:24 has no hits.
BS08884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:57 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:51 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 182..926 | 13..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:54 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 181..918 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:57 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 182..926 | 13..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:48 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
REG-RA | 181..918 | 17..754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:48 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13212589..13212958 | 17..386 | 100 | -> | Plus |
X | 13213156..13213523 | 387..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:54 Download gff for
BS08884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13106622..13106991 | 17..386 | 100 | -> | Plus |
arm_X | 13107189..13107556 | 387..754 | 100 | | Plus |
BS08884.pep Sequence
Translation from 16 to 753
> BS08884.pep
MPNDTVVKVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFE
EVHQDLNIPVLPPLLVKNELEDRDSLPTKRQRVDVIVSGQPVMGLPAGTV
PCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGVSIQE
DTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVEL
DEKEYLSLWLVVCEVRNRYSSLHDIVIKNLEKLKKPRSSNTESLY*
BS08884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
REG-PB | 245 | CG1591-PB | 1..245 | 1..245 | 1246 | 100 | Plus |
REG-PA | 245 | CG1591-PA | 1..245 | 1..245 | 1246 | 100 | Plus |