Clone BS08884 Report

Search the DGRC for BS08884

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptREG-RA
Protein status:BS08884.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08884.3prime Sequence

768 bp (767 high quality bases) assembled on 2006-01-18

> BS08884.3prime
ATGGTCTAGAAAGCTTCTAATACAGGCTTTCGGTATTTGAGGAGCGCGGC
TTCTTTAGCTTCTCGAGGTTCTTAATAACAATGTCGTGCAGCGAGGAGTA
GCGATTGCGGACCTCACAAACGACCAGCCACAAGCTGAGGTACTCCTTCT
CGTCAAGTTCGACGACTGCGCGCCGATAATCATCGATGTGCGGATACTTG
GCCACCTTGGACACCACCTTGGCGCGCGACAAGAAATAGCGCGATATCTG
GTCAAAGAAGGCGGCCGCCTCGGATTCCACAGTTTGAATTTCGGCAAGCG
TGTCCTCTTGAATGGAGACGCCAAAGTTGTTGCCATCCTCGATCTTGGGT
ATCATAAAGGAGATCCACATCTTAAGTAGATTGGAATCCTCCACAAGCTT
CCTGATGATAGGCTTGACGACCTTGATCATCTCGCAGAGCGGCTTGTTGC
ACGGCACTGTACCGGCGGGCAGACCCATGACAGGCTGCCCAGAGACGATG
ACATCCACGCGCTGGCGCTTGGTGGGCAGACTGTCACGATCCTCCAACTC
GTTTTTAACCAGGAGAGGCGGCAGGACCGGGATGTTGAGGTCCTGGTGCA
CTTCTTCGAAGTTGCGCTCGTTGAAGATCGGCGTGGCCAGCAGCTCGTTC
AGCCGGACGATATTCTCCGGGAACCCCTTGGTGATTAGCAGCTCTGCCTT
GAGGATCAACGAGTCCTTGTACTCCTGCACCTTTACCACAGTGTCGTTAG
GCATGTCGACTGATAACT

BS08884.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1591-PA 738 REG-RA 1..738 754..17 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..945 758..17 3695 99.9 Minus
REG-RA 1370 CG1591-RA 177..918 758..17 3695 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 758..385 1855 99.7 Minus
X 23542271 X 13213156..13213523 384..17 1840 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:51:15 has no hits.

BS08884.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:52:59 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:01 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1591-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:02 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 12..758 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:58 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 12..758 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:58 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13212585..13212958 385..758 99 -> Minus
X 13213156..13213526 12..384 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:02 Download gff for BS08884.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106618..13106991 385..758 99 -> Minus
arm_X 13107189..13107559 12..384 99   Minus

BS08884.5prime Sequence

768 bp (767 high quality bases) assembled on 2006-01-18

> BS08884.5prime
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TTAGAAGCTTTCTAGACC

BS08884.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1591-PA 738 REG-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..945 13..754 3695 99.9 Plus
REG-RA 1370 CG1591-RA 177..918 13..754 3695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 13..386 1855 99.7 Plus
X 23542271 X 13213156..13213523 387..754 1840 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:09:30 has no hits.

BS08884.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:00 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:02 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1591-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:19 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 13..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:36:27 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 13..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:36:27 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13212585..13212958 13..386 99 -> Plus
X 13213156..13213526 387..759 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:19 Download gff for BS08884.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106618..13106991 13..386 99 -> Plus
arm_X 13107189..13107559 387..759 99   Plus

BS08884.complete Sequence

770 bp (770 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636310

> BS08884.complete
GAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGT
ACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTC
CCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAA
CGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGC
CGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACC
AAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCT
GCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGG
TCGTCAAGCCTATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAG
ATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGG
CGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCG
AGGCGGCCGCCTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCC
AAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCG
CGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCG
TTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAG
AACCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTA
TTAGAAGCTTTCTAGACCAT

BS08884.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 738 CG1591-PB 1..738 17..754 3690 100 Plus
REG-RA 738 CG1591-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..945 13..754 3695 99.9 Plus
REG-RA 1370 CG1591-RA 177..918 13..754 3695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13212585..13212958 13..386 1855 99.7 Plus
X 23542271 X 13213156..13213523 387..754 1840 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:38:24 has no hits.

BS08884.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:57 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:51 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 182..926 13..759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:54 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 181..918 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:57 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 182..926 13..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:48 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
REG-RA 181..918 17..754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:48 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
X 13212589..13212958 17..386 100 -> Plus
X 13213156..13213523 387..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:54 Download gff for BS08884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106622..13106991 17..386 100 -> Plus
arm_X 13107189..13107556 387..754 100   Plus

BS08884.pep Sequence

Translation from 16 to 753

> BS08884.pep
MPNDTVVKVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFE
EVHQDLNIPVLPPLLVKNELEDRDSLPTKRQRVDVIVSGQPVMGLPAGTV
PCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGVSIQE
DTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVEL
DEKEYLSLWLVVCEVRNRYSSLHDIVIKNLEKLKKPRSSNTESLY*

BS08884.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
REG-PB 245 CG1591-PB 1..245 1..245 1246 100 Plus
REG-PA 245 CG1591-PA 1..245 1..245 1246 100 Plus