Clone BS08886 Report

Search the DGRC for BS08886

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCct1-RB
Protein status:BS08886.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08886.3prime Sequence

873 bp (820 high quality bases) assembled on 2006-01-18

> BS08886.3prime
ATGGTCTAGAAAGCTTTCAATTGCTTCGACGCTCGTACTCCGCATCCGCA
TCCGCATCCTCGTCCCCATCCGCTTCCAAGTCGGGTGATTGGCTCTGCAG
ACTCTGGTAACTGCGGCGGGCCAGCGAGGAGCGCTTCTGCTTCGGCCTCT
GTTTGCCGTTCAGCGATCCACTGCTGCCGCTGCCGCTGCCCCCGCTCAAC
TTCTCGGCCATCTCCAAGTACTCGTCAATAGTTTCGCTGTAGTCCTCGCC
GCCCTCCGTGTCATCACCGTTCACTGATCCCGACGGGCTGCCCGGCGGAC
TGAGTGCCTGCAGCAGCTTGCCCTTCGACTCGTTCCACAAATGATTCAGG
TTCTCACGTCCGAACAGCAGCAGGAAGGTGTCGATGAATTCGCGCGACTT
CTCCTCCCACTTGGTGATGATGTCCACCTTCACCTTGCTCAGCTCGCGCT
TGCCGCGCGACTTCAGCTCGTCCATCTTGTTCTGCAGCCGGAACTTCTTC
TCGGACAGGAACGACACATTGAGTTCCTTGGCCGAATAGCCTCTGGCCAG
ATTACGACGCACATACAGATCGTAATCCTTGACGATCCGGGCTACGATGT
CCGAGGTGGACACACCCTCAGTGCGCTCCGTGGCCACAAACATGCCGCGC
GCCTTGAGAGGAGCATAGATGTCGTCCATGCCATCGGTTACATACGGAAT
GTCGTCGTGGGCCACAAAGTCGATTTTGTTGTCGGCGATGAATTCATCGG
ACAGAGTCCATGGCGCATTCTGGACGATCTCGTCCACATAGCGGCAGTGA
CGCACTCCCTCGTATCGCTCGAAGCCGTTCATCACGGTGCGTCCCTTCAT
GCGGTGGGTGAGCTCGTCGTTGC

BS08886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1049-PA 1581 Cct1-RA 725..1581 873..17 4285 100 Minus
CG1049-PD 1581 Cct1-RD 725..1581 873..17 4285 100 Minus
CG1049-PB 1581 Cct1-RB 725..1581 873..17 4285 100 Minus
CG1049-PC 1581 Cct1-RC 725..1581 873..17 4285 100 Minus
CG18330-PA 1146 Cct2-RA 712..857 505..360 380 90.4 Minus
CG18330-PA 1146 Cct2-RA 574..659 643..558 180 88.3 Minus
CG18330-PA 1146 Cct2-RA 367..443 850..774 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 1020..1876 873..17 4285 100 Minus
Cct1-RE 2564 CG1049-RE 1098..1954 873..17 4285 100 Minus
Cct1-RC 2302 CG1049-RC 836..1692 873..17 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1551863..1552626 780..17 3820 100 Minus
3L 28110227 3L 1554459..1554975 780..264 1085 80.7 Minus
3L 28110227 3L 1551707..1551801 873..779 475 100 Minus
3L 28110227 3L 1554307..1554401 873..779 235 83.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:03:40 has no hits.

BS08886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:03 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-PB 725..1581 17..873 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:07 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1049-PD 725..1581 17..873 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:48 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 941..1801 12..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:27 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 836..1696 12..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:27 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1551707..1551801 779..873 100 -> Minus
3L 1551865..1552630 12..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:48 Download gff for BS08886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1551707..1551801 779..873 100 -> Minus
arm_3L 1551865..1552630 12..778 99   Minus

BS08886.5prime Sequence

801 bp (800 high quality bases) assembled on 2006-01-18

> BS08886.5prime
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGAT
A

BS08886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1049-PA 1581 Cct1-RA 1..785 17..801 3925 100 Plus
CG1049-PD 1581 Cct1-RD 1..785 17..801 3925 100 Plus
CG1049-PB 1581 Cct1-RB 1..785 17..801 3925 100 Plus
CG1049-PC 1581 Cct1-RC 1..785 17..801 3925 100 Plus
CG18330-PA 1146 Cct2-RA 221..308 618..705 190 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 296..1080 17..801 3925 100 Plus
Cct1-RE 2564 CG1049-RE 374..1158 17..801 3925 100 Plus
Cct1-RC 2302 CG1049-RC 112..896 17..801 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1550794..1551288 17..511 2475 100 Plus
3L 28110227 3L 1551477..1551767 511..801 1455 100 Plus
3L 28110227 3L 1554081..1554364 515..798 625 81.3 Plus
Blast to na_te.dros performed on 2015-02-11 13:21:52 has no hits.

BS08886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:04 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-PB 1..784 17..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:08 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1049-PC 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:37 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1000 13..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:01 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 110..895 13..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:01 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1550792..1551288 13..511 99 -> Plus
3L 1551478..1551766 512..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:37 Download gff for BS08886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1550792..1551288 13..511 99 -> Plus
arm_3L 1551478..1551766 512..800 100   Plus

BS08886.complete Sequence

1613 bp (1613 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636311

> BS08886.complete
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGAT
ACGAGGGAGTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGCG
CCATGGACTCTGTCCGATGAATTCATCGCCGACAACAAAATCGACTTTGT
GGCCCACGACGACATTCCGTATGTAACCGATGGCATGGACGACATCTATG
CTCCTCTCAAGGCGCGCGGCATGTTTGTGGCCACGGAGCGCACTGAGGGT
GTGTCCACCTCGGACATCGTAGCCCGGATCGTCAAGGATTACGATCTGTA
TGTGCGTCGTAATCTGGCCAGAGGCTATTCGGCCAAGGAACTCAATGTGT
CGTTCCTGTCCGAGAAGAAGTTCCGGCTGCAGAACAAGATGGACGAGCTG
AAGTCGCGCGGCAAGCGCGAGCTGAGCAAGGTGAAGGTGGACATCATCAC
CAAGTGGGAGGAGAAGTCGCGCGAATTCATCGACACCTTCCTGCTGCTGT
TCGGACGTGAGAACCTGAATCATTTGTGGAACGAGTCGAAGGGCAAGCTG
CTGCAGGCACTCAGTCCGCCGGGCAGCCCGTCGGGATCAGTGAACGGTGA
TGACACGGAGGGCGGCGAGGACTACAGCGAAACTATTGACGAGTACTTGG
AGATGGCCGAGAAGTTGAGCGGGGGCAGCGGCAGCGGCAGCAGTGGATCG
CTGAACGGCAAACAGAGGCCGAAGCAGAAGCGCTCCTCGCTGGCCCGCCG
CAGTTACCAGAGTCTGCAGAGCCAATCACCCGACTTGGAAGCGGATGGGG
ACGAGGATGCGGATGCGGATGCGGAGTACGAGCGTCGAAGCAATTGAAAG
CTTTCTAGACCAT

BS08886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 1581 CG1049-PF 1..1581 17..1597 7905 100 Plus
Cct1-RE 1581 CG1049-PE 1..1581 17..1597 7905 100 Plus
Cct1-RC 1581 CG1049-PC 1..1581 17..1597 7905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-RF 2754 CG1049-RF 296..1876 17..1597 7905 100 Plus
Cct1-RE 2564 CG1049-RE 374..1954 17..1597 7905 100 Plus
Cct1-RC 2302 CG1049-RC 112..1692 17..1597 7905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1551863..1552626 834..1597 3820 100 Plus
3L 28110227 3L 1550794..1551288 17..511 2475 100 Plus
3L 28110227 3L 1551477..1551801 511..835 1625 100 Plus
3L 28110227 3L 1554459..1554975 834..1350 1085 80.7 Plus
3L 28110227 3L 1554081..1554401 515..835 720 81.6 Plus
Blast to na_te.dros performed on 2014-11-27 07:41:24 has no hits.

BS08886.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:30 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 1..1581 17..1597 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:31 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1801 13..1602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:30 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 217..1796 17..1596 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:30 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RB 215..1801 13..1602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:17 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
Cct1-RC 112..1691 17..1596 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:17 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1551478..1551801 512..835 100 -> Plus
3L 1550794..1551288 17..511 100 -> Plus
3L 1551865..1552625 836..1596 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:30 Download gff for BS08886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1550794..1551288 17..511 100 -> Plus
arm_3L 1551478..1551801 512..835 100 -> Plus
arm_3L 1551865..1552625 836..1596 100   Plus

BS08886.pep Sequence

Translation from 16 to 1596

> BS08886.pep
MATSSILAKSTINSTSPPATPSSSASPGSTLTTRKRTYEIAIAMPSSTAS
SSATKVSEVQDQRTNSPGKSKSRPGQLESVLVVGEGASEPTTSATTLRDS
TRTISQSDADDGGEAAAAEDLLPPQSDYLNGVKRKYVPQQQASPNHRVVP
ASTSQQFFSGASDFATICKPAPYSHDEEAMLERDRCDYTQRITYQMARSG
QTTRRVRVYADGIYDLFHQGHARQLMQAKNIFPNVYLIVGVCNDELTHRM
KGRTVMNGFERYEGVRHCRYVDEIVQNAPWTLSDEFIADNKIDFVAHDDI
PYVTDGMDDIYAPLKARGMFVATERTEGVSTSDIVARIVKDYDLYVRRNL
ARGYSAKELNVSFLSEKKFRLQNKMDELKSRGKRELSKVKVDIITKWEEK
SREFIDTFLLLFGRENLNHLWNESKGKLLQALSPPGSPSGSVNGDDTEGG
EDYSETIDEYLEMAEKLSGGSGSGSSGSLNGKQRPKQKRSSLARRSYQSL
QSQSPDLEADGDEDADADAEYERRSN*

BS08886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cct1-PF 526 CG1049-PF 1..526 1..526 2695 100 Plus
Cct1-PE 526 CG1049-PE 1..526 1..526 2695 100 Plus
Cct1-PC 526 CG1049-PC 1..526 1..526 2695 100 Plus
Cct1-PB 526 CG1049-PB 1..526 1..526 2695 100 Plus
Cct1-PD 526 CG1049-PD 1..526 1..526 2695 100 Plus