Clone Sequence Records
BS08886.3prime Sequence
873 bp (820 high quality bases) assembled on 2006-01-18
> BS08886.3prime
ATGGTCTAGAAAGCTTTCAATTGCTTCGACGCTCGTACTCCGCATCCGCA
TCCGCATCCTCGTCCCCATCCGCTTCCAAGTCGGGTGATTGGCTCTGCAG
ACTCTGGTAACTGCGGCGGGCCAGCGAGGAGCGCTTCTGCTTCGGCCTCT
GTTTGCCGTTCAGCGATCCACTGCTGCCGCTGCCGCTGCCCCCGCTCAAC
TTCTCGGCCATCTCCAAGTACTCGTCAATAGTTTCGCTGTAGTCCTCGCC
GCCCTCCGTGTCATCACCGTTCACTGATCCCGACGGGCTGCCCGGCGGAC
TGAGTGCCTGCAGCAGCTTGCCCTTCGACTCGTTCCACAAATGATTCAGG
TTCTCACGTCCGAACAGCAGCAGGAAGGTGTCGATGAATTCGCGCGACTT
CTCCTCCCACTTGGTGATGATGTCCACCTTCACCTTGCTCAGCTCGCGCT
TGCCGCGCGACTTCAGCTCGTCCATCTTGTTCTGCAGCCGGAACTTCTTC
TCGGACAGGAACGACACATTGAGTTCCTTGGCCGAATAGCCTCTGGCCAG
ATTACGACGCACATACAGATCGTAATCCTTGACGATCCGGGCTACGATGT
CCGAGGTGGACACACCCTCAGTGCGCTCCGTGGCCACAAACATGCCGCGC
GCCTTGAGAGGAGCATAGATGTCGTCCATGCCATCGGTTACATACGGAAT
GTCGTCGTGGGCCACAAAGTCGATTTTGTTGTCGGCGATGAATTCATCGG
ACAGAGTCCATGGCGCATTCTGGACGATCTCGTCCACATAGCGGCAGTGA
CGCACTCCCTCGTATCGCTCGAAGCCGTTCATCACGGTGCGTCCCTTCAT
GCGGTGGGTGAGCTCGTCGTTGC
BS08886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1049-PA | 1581 | Cct1-RA | 725..1581 | 873..17 | 4285 | 100 | Minus |
CG1049-PD | 1581 | Cct1-RD | 725..1581 | 873..17 | 4285 | 100 | Minus |
CG1049-PB | 1581 | Cct1-RB | 725..1581 | 873..17 | 4285 | 100 | Minus |
CG1049-PC | 1581 | Cct1-RC | 725..1581 | 873..17 | 4285 | 100 | Minus |
CG18330-PA | 1146 | Cct2-RA | 712..857 | 505..360 | 380 | 90.4 | Minus |
CG18330-PA | 1146 | Cct2-RA | 574..659 | 643..558 | 180 | 88.3 | Minus |
CG18330-PA | 1146 | Cct2-RA | 367..443 | 850..774 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct1-RF | 2754 | CG1049-RF | 1020..1876 | 873..17 | 4285 | 100 | Minus |
Cct1-RE | 2564 | CG1049-RE | 1098..1954 | 873..17 | 4285 | 100 | Minus |
Cct1-RC | 2302 | CG1049-RC | 836..1692 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1551863..1552626 | 780..17 | 3820 | 100 | Minus |
3L | 28110227 | 3L | 1554459..1554975 | 780..264 | 1085 | 80.7 | Minus |
3L | 28110227 | 3L | 1551707..1551801 | 873..779 | 475 | 100 | Minus |
3L | 28110227 | 3L | 1554307..1554401 | 873..779 | 235 | 83.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:03:40 has no hits.
BS08886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:03 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-PB | 725..1581 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:07 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1049-PD | 725..1581 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:48 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 941..1801 | 12..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:27 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RC | 836..1696 | 12..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:27 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1551707..1551801 | 779..873 | 100 | -> | Minus |
3L | 1551865..1552630 | 12..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:48 Download gff for
BS08886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1551707..1551801 | 779..873 | 100 | -> | Minus |
arm_3L | 1551865..1552630 | 12..778 | 99 | | Minus |
BS08886.5prime Sequence
801 bp (800 high quality bases) assembled on 2006-01-18
> BS08886.5prime
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGAT
A
BS08886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1049-PA | 1581 | Cct1-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
CG1049-PD | 1581 | Cct1-RD | 1..785 | 17..801 | 3925 | 100 | Plus |
CG1049-PB | 1581 | Cct1-RB | 1..785 | 17..801 | 3925 | 100 | Plus |
CG1049-PC | 1581 | Cct1-RC | 1..785 | 17..801 | 3925 | 100 | Plus |
CG18330-PA | 1146 | Cct2-RA | 221..308 | 618..705 | 190 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct1-RF | 2754 | CG1049-RF | 296..1080 | 17..801 | 3925 | 100 | Plus |
Cct1-RE | 2564 | CG1049-RE | 374..1158 | 17..801 | 3925 | 100 | Plus |
Cct1-RC | 2302 | CG1049-RC | 112..896 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1550794..1551288 | 17..511 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 1551477..1551767 | 511..801 | 1455 | 100 | Plus |
3L | 28110227 | 3L | 1554081..1554364 | 515..798 | 625 | 81.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:21:52 has no hits.
BS08886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:04 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-PB | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:08 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1049-PC | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:37 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 215..1000 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:01 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RC | 110..895 | 13..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:01 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1550792..1551288 | 13..511 | 99 | -> | Plus |
3L | 1551478..1551766 | 512..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:37 Download gff for
BS08886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1550792..1551288 | 13..511 | 99 | -> | Plus |
arm_3L | 1551478..1551766 | 512..800 | 100 | | Plus |
BS08886.complete Sequence
1613 bp (1613 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636311
> BS08886.complete
GAAGTTATCAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAA
TTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGC
TCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCC
CTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATC
AGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAG
AGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCAC
CACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATG
GCGGCGAAGCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTAC
CTCAACGGCGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAA
TCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCT
CCGATTTTGCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAG
GCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCA
GATGGCCCGCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATG
GCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCC
AAGAACATCTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGA
GCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGAT
ACGAGGGAGTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGCG
CCATGGACTCTGTCCGATGAATTCATCGCCGACAACAAAATCGACTTTGT
GGCCCACGACGACATTCCGTATGTAACCGATGGCATGGACGACATCTATG
CTCCTCTCAAGGCGCGCGGCATGTTTGTGGCCACGGAGCGCACTGAGGGT
GTGTCCACCTCGGACATCGTAGCCCGGATCGTCAAGGATTACGATCTGTA
TGTGCGTCGTAATCTGGCCAGAGGCTATTCGGCCAAGGAACTCAATGTGT
CGTTCCTGTCCGAGAAGAAGTTCCGGCTGCAGAACAAGATGGACGAGCTG
AAGTCGCGCGGCAAGCGCGAGCTGAGCAAGGTGAAGGTGGACATCATCAC
CAAGTGGGAGGAGAAGTCGCGCGAATTCATCGACACCTTCCTGCTGCTGT
TCGGACGTGAGAACCTGAATCATTTGTGGAACGAGTCGAAGGGCAAGCTG
CTGCAGGCACTCAGTCCGCCGGGCAGCCCGTCGGGATCAGTGAACGGTGA
TGACACGGAGGGCGGCGAGGACTACAGCGAAACTATTGACGAGTACTTGG
AGATGGCCGAGAAGTTGAGCGGGGGCAGCGGCAGCGGCAGCAGTGGATCG
CTGAACGGCAAACAGAGGCCGAAGCAGAAGCGCTCCTCGCTGGCCCGCCG
CAGTTACCAGAGTCTGCAGAGCCAATCACCCGACTTGGAAGCGGATGGGG
ACGAGGATGCGGATGCGGATGCGGAGTACGAGCGTCGAAGCAATTGAAAG
CTTTCTAGACCAT
BS08886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct1-RF | 1581 | CG1049-PF | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Cct1-RE | 1581 | CG1049-PE | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Cct1-RC | 1581 | CG1049-PC | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct1-RF | 2754 | CG1049-RF | 296..1876 | 17..1597 | 7905 | 100 | Plus |
Cct1-RE | 2564 | CG1049-RE | 374..1954 | 17..1597 | 7905 | 100 | Plus |
Cct1-RC | 2302 | CG1049-RC | 112..1692 | 17..1597 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1551863..1552626 | 834..1597 | 3820 | 100 | Plus |
3L | 28110227 | 3L | 1550794..1551288 | 17..511 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 1551477..1551801 | 511..835 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 1554459..1554975 | 834..1350 | 1085 | 80.7 | Plus |
3L | 28110227 | 3L | 1554081..1554401 | 515..835 | 720 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:41:24 has no hits.
BS08886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:30 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 1..1581 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:31 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 215..1801 | 13..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:30 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 217..1796 | 17..1596 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:30 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RB | 215..1801 | 13..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:17 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct1-RC | 112..1691 | 17..1596 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:17 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1551478..1551801 | 512..835 | 100 | -> | Plus |
3L | 1550794..1551288 | 17..511 | 100 | -> | Plus |
3L | 1551865..1552625 | 836..1596 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:30 Download gff for
BS08886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1550794..1551288 | 17..511 | 100 | -> | Plus |
arm_3L | 1551478..1551801 | 512..835 | 100 | -> | Plus |
arm_3L | 1551865..1552625 | 836..1596 | 100 | | Plus |
BS08886.pep Sequence
Translation from 16 to 1596
> BS08886.pep
MATSSILAKSTINSTSPPATPSSSASPGSTLTTRKRTYEIAIAMPSSTAS
SSATKVSEVQDQRTNSPGKSKSRPGQLESVLVVGEGASEPTTSATTLRDS
TRTISQSDADDGGEAAAAEDLLPPQSDYLNGVKRKYVPQQQASPNHRVVP
ASTSQQFFSGASDFATICKPAPYSHDEEAMLERDRCDYTQRITYQMARSG
QTTRRVRVYADGIYDLFHQGHARQLMQAKNIFPNVYLIVGVCNDELTHRM
KGRTVMNGFERYEGVRHCRYVDEIVQNAPWTLSDEFIADNKIDFVAHDDI
PYVTDGMDDIYAPLKARGMFVATERTEGVSTSDIVARIVKDYDLYVRRNL
ARGYSAKELNVSFLSEKKFRLQNKMDELKSRGKRELSKVKVDIITKWEEK
SREFIDTFLLLFGRENLNHLWNESKGKLLQALSPPGSPSGSVNGDDTEGG
EDYSETIDEYLEMAEKLSGGSGSGSSGSLNGKQRPKQKRSSLARRSYQSL
QSQSPDLEADGDEDADADAEYERRSN*
BS08886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct1-PF | 526 | CG1049-PF | 1..526 | 1..526 | 2695 | 100 | Plus |
Cct1-PE | 526 | CG1049-PE | 1..526 | 1..526 | 2695 | 100 | Plus |
Cct1-PC | 526 | CG1049-PC | 1..526 | 1..526 | 2695 | 100 | Plus |
Cct1-PB | 526 | CG1049-PB | 1..526 | 1..526 | 2695 | 100 | Plus |
Cct1-PD | 526 | CG1049-PD | 1..526 | 1..526 | 2695 | 100 | Plus |