Clone Sequence Records
BS08887.3prime Sequence
855 bp (806 high quality bases) assembled on 2006-01-18
> BS08887.3prime
ATGGTCTAGAAAGCTTCTAACGCATAAACTTCTTGGCCTGGTCGCGGTTG
ACCTGCTTGAAGTGCCGCTGCTTGGAAGCCGATCCCTCGTTCATTTTCTT
GTAGAATCCGAAACCGCCGCCGCCCACTCGCTTTTCCGGTCGCTCCCGCT
TGGCCGCGCCCACCTTCAGGTCAACTACGGGTGGCACAAGGAATCCAAAG
CTTTTCGCAACCGCCTGCAGGTCCAACGTGTTCACATTGAAGATCTGCTT
CAATTGATGCGAATCGTATGCGCGCACATACGACTTAAAGGCTTCCTTGG
CCGACTGGTTTAGGAAATAGTTCTTGGCGATCAGTTTCTCCAGCTGCAGT
TGAATATCAGCTATCTTCTGCCAGGAGAACTCGAACTCATTGAGCGGCAC
CTTGGCGGCCTTAAGGTAGCGCAGGAAGCCCAGCTCCTCCGGTCGCATCA
GAAGGAGGGCGTGACCCGAGGTGCCCGATCCTCTGGCCGTTCGGCCCACC
CTGTGAATATACTCGCGTGGATCATCTGGAGGATCGTACTGCACAATCCA
ATCGACTTGCGGAATGTCCAATCCACGAGCAGCCACATCCGTACATAAGA
GAATCCCAGATTCCGCGTTGCAGAACTGGAAGAAGGTGGTCGTTCGTTTC
GTTTGCTTTTGTTTACCGTGGATGGAGGTCACTGGCAGATCAATGTAGTT
GAAGAGCTCGTGGTGGTATTTGACGGACATGCAGGACGAGAAGAACACCA
TCACCTTCTTCTTACGATTCTTTTTGAGGAACGTGAAGAGCACGAGCAGT
CGCTTCTCCGAGGGGCAAACAATGTACCCCTGCTCGAGTCCATCTACGGT
CGCCG
BS08887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6375-PA | 2043 | pit-RA | 1205..2043 | 855..17 | 4195 | 100 | Minus |
| CG6375-PB | 2043 | pit-RB | 1205..2043 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 1323..2161 | 855..17 | 4195 | 100 | Minus |
| pit-RA | 2270 | CG6375-RA | 1323..2161 | 855..17 | 4195 | 100 | Minus |
| pit-RB | 2324 | CG6375-RB | 1377..2215 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22037366..22037881 | 855..340 | 2565 | 99.8 | Minus |
| 3R | 32079331 | 3R | 22037950..22038283 | 350..17 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:48:00 has no hits.
BS08887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:05 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-PB | 1205..2043 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:09 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6375-PB | 1205..2043 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:33 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 1323..2164 | 10..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:07 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 1377..2218 | 10..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:07 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22037366..22037877 | 344..855 | 100 | -> | Minus |
| 3R | 22037957..22038286 | 10..343 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:33 Download gff for
BS08887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17863088..17863599 | 344..855 | 100 | -> | Minus |
| arm_3R | 17863679..17864008 | 10..343 | 98 | | Minus |
BS08887.5prime Sequence
890 bp (834 high quality bases) assembled on 2006-01-18
> BS08887.5prime
GAAGTTATCAGTCGACATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGA
TCGTTAAGCGGGAGAAGATGAAGAAGGAGCTCTCGCAGAAGAAGGGAAAC
AAGAACGCCCAAAAGCAGGAGCCACCCAAACAAAATGGCAATAAACCCAG
TAAAAAACCGGAGAAACTCAGTAAAAAGCATGTGGCCAAGGATGAGGATG
ACGACTTAGAGGAGGATTTCCAGGAGGCGCCGCTGCCCAAGAAGAAGCAA
CAAAAACAGCCTCCAAAAAAGCAACAAATTCAGGTGGCCAACTCGGATTC
GGAATCAGATGACGATGAGCAGGAGGATGAGGCAGATGAGGATAGCGATT
TGGACGAAGTAGCCGAAGTTGATGAGGAGGATGTTGACAGCGGGAGTGAA
GATGATGACCAGCAGGAAGATGAAGATGAAGAAGAACCTGTGCCAGCCAA
GAAAACGAAGTTGCTTCCCAACAAGTCCAAGGCACAGAATGGCAAACCAG
CTAAAGACGACGAGCCCTTTACCGTGGAATCCTCACTGGCTGCACTGGAT
TACCGAGATTCGGATGATCGCAGCTTTGCCTCTTTAAAGGGCGCCGTGTC
CGAGGCCACATTGCGAGCCATTAAGGAGATGGGTTTTACCGAGATGACTG
AAATTCAGTCGAAATCGCTGACACCCCTACTAAAGGGACGGGATCTGGTG
GGTGCTGCCCAGACGGGTTCCGGCAAAACCCTGGCCTTCCTGATACCCGC
CGTCGAGCTGATAAACAAGCTGAGGTTTATGCCACGCAATGGTACCGGCG
TGATCATCATCTCACCTACCCGAGAGTTGTCCATGCAAACTTTCGGTGTG
CTCAAAGAGCTGATGGCACACCACCATCACACTTATGGCT
BS08887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6375-PA | 2043 | pit-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG6375-PB | 2043 | pit-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 119..992 | 17..890 | 4370 | 100 | Plus |
| pit-RA | 2270 | CG6375-RA | 119..992 | 17..890 | 4370 | 100 | Plus |
| pit-RB | 2324 | CG6375-RB | 173..1046 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22036505..22036977 | 418..890 | 2365 | 100 | Plus |
| 3R | 32079331 | 3R | 22036075..22036297 | 197..419 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 22035835..22036015 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:21:46 has no hits.
BS08887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:07 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:11 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6375-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:35 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 113..992 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:47 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 167..1046 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:47 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22035829..22036015 | 10..197 | 98 | -> | Plus |
| 3R | 22036076..22036297 | 198..419 | 100 | -> | Plus |
| 3R | 22036507..22036977 | 420..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:35 Download gff for
BS08887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17861551..17861737 | 10..197 | 98 | -> | Plus |
| arm_3R | 17861798..17862019 | 198..419 | 100 | -> | Plus |
| arm_3R | 17862229..17862699 | 420..890 | 100 | | Plus |
BS08887.complete Sequence
2075 bp assembled on 2008-08-14
GenBank Submission: FJ636312
> BS08887.complete
GAAGTTATCAGTCGACATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGA
TCGTTAAGCGGGAGAAGATGAAGAAGGAGCTCTCGCAGAAGAAGGGAAAC
AAGAACGCCCAAAAGCAGGAGCCACCCAAACAAAATGGCAATAAACCCAG
TAAAAAACCGGAGAAACTCAGTAAAAAGCATGTGGCCAAGGATGAGGATG
ACGACTTAGAGGAGGATTTCCAGGAGGCGCCGCTGCCCAAGAAGAAGCAA
CAAAAACAGCCTCCAAAAAAGCAACAAATTCAGGTGGCCAACTCGGATTC
GGAATCAGATGACGATGAGCAGGAGGATGAGGCAGATGAGGATAGCGATT
TGGACGAAGTAGCCGAAGTTGATGAGGAGGATGTTGACAGCGGGAGTGAA
GATGATGACCAGCAGGAAGATGAAGATGAAGAAGAACCTGTGCCAGCCAA
GAAAACGAAGTTGCTTCCCAACAAGTCCAAGGCACAGAATGGCAAACCAG
CTAAAGACGACGAGCCCTTTACCGTGGAATCCTCACTGGCTGCACTGGAT
TACCGAGATTCGGATGATCGCAGCTTTGCCTCTTTAAAGGGCGCCGTGTC
CGAGGCCACATTGCGAGCCATTAAGGAGATGGGTTTTACCGAGATGACTG
AAATTCAGTCGAAATCGCTGACACCCCTACTAAAGGGACGGGATCTGGTG
GGTGCTGCCCAGACGGGTTCCGGCAAAACCCTGGCCTTCCTGATACCCGC
CGTCGAGCTGATAAACAAGCTGAGGTTTATGCCACGCAATGGTACCGGCG
TGATCATCATCTCACCTACCCGAGAGTTGTCCATGCAAACTTTCGGTGTG
CTCAAAGAGCTGATGGCACACCACCATCACACTTATGGCTTGGTAATGGG
CGGCTCCAATCGGCAGGTGGAGAGCGAGAAGTTGGGCAAGGGCATCAACA
TTCTGGTGGCCACACCGGGTCGTCTGCTGGATCATTTACAAAACTCGCCC
GACTTTCTGTACAAGAACCTTCAGTGCCTGATTATCGATGAAGTGGATCG
AATTCTGGAGATCGGTTTTGAGGAGGAGCTTAAGCAAATAATAAATCTGC
TGCCAAAACGCCGCCAGACGATGCTCTTCTCGGCCACACAGACGGCTCGC
ATCGAAGCGCTTTCCAAGCTGGCCCTTAAGTCGGAACCAATTTATGTAGG
GGTTCACGACAACCAGGACACGGCGACCGTAGATGGACTCGAGCAGGGGT
ACATTGTTTGCCCCTCGGAGAAGCGACTGCTCGTGCTCTTCACGTTCCTC
AAAAAGAATCGTAAGAAGAAGGTGATGGTGTTCTTCTCGTCCTGCATGTC
CGTCAAATACCACCACGAGCTCTTCAACTACATTGATCTGCCAGTGACCT
CCATCCACGGTAAACAAAAGCAAACGAAACGAACGACCACCTTCTTCCAG
TTCTGCAACGCGGAATCTGGGATTCTCTTATGTACGGATGTGGCTGCTCG
TGGATTGGACATTCCGCAAGTCGATTGGATTGTGCAGTACGATCCTCCAG
ATGATCCACGCGAGTATATTCACAGGGTGGGCCGAACGGCCAGAGGATCG
GGCACCTCGGGTCACGCCCTCCTTCTGATGCGACCGGAGGAGCTGGGCTT
CCTGCGCTACCTTAAGGCCGCCAAGGTGCCGCTCAATGAGTTCGAGTTCT
CCTGGCAGAAGATAGCTGATATTCAACTGCAGCTGGAGAAACTGATCGCC
AAGAACTATTTCCTAAACCAGTCGGCCAAGGAAGCCTTTAAGTCGTATGT
GCGCGCATACGATTCGCATCAATTGAAGCAGATCTTCAATGTGAACACGT
TGGACCTGCAGGCGGTTGCGAAAAGCTTTGGATTCCTTGTGCCACCCGTA
GTTGACCTGAAGGTGGGCGCGGCCAAGCGGGAGCGACCGGAAAAGCGAGT
GGGCGGCGGCGGTTTCGGATTCTACAAGAAAATGAACGAGGGATCGGCTT
CCAAGCAGCGGCACTTCAAGCAGGTCAACCGCGACCAGGCCAAGAAGTTT
ATGCGTTAGAAGCTTTCTAGACCAT
BS08887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2043 | CG6375-PC | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| pit-RA | 2043 | CG6375-PA | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| pit-RB | 2043 | CG6375-PB | 1..2043 | 17..2059 | 10215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 119..2161 | 17..2059 | 10215 | 100 | Plus |
| pit-RA | 2270 | CG6375-RA | 119..2161 | 17..2059 | 10215 | 100 | Plus |
| pit-RB | 2324 | CG6375-RB | 173..2215 | 17..2059 | 10215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22036505..22037193 | 418..1106 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 22037252..22037881 | 1107..1736 | 3135 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22037950..22038283 | 1726..2059 | 1670 | 100 | Plus |
| 3R | 32079331 | 3R | 22036075..22036297 | 197..419 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 22035835..22036015 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:58:30 has no hits.
BS08887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:28 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 167..2218 | 10..2066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:59 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 119..2161 | 17..2059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:47 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 173..2215 | 17..2059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:32 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 173..2215 | 17..2059 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:32 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22035835..22036015 | 17..197 | 100 | -> | Plus |
| 3R | 22036076..22036297 | 198..419 | 100 | -> | Plus |
| 3R | 22036507..22037193 | 420..1106 | 100 | -> | Plus |
| 3R | 22037252..22037877 | 1107..1732 | 100 | -> | Plus |
| 3R | 22037957..22038283 | 1733..2059 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:59 Download gff for
BS08887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17861557..17861737 | 17..197 | 100 | -> | Plus |
| arm_3R | 17861798..17862019 | 198..419 | 100 | -> | Plus |
| arm_3R | 17862229..17862915 | 420..1106 | 100 | -> | Plus |
| arm_3R | 17862974..17863599 | 1107..1732 | 100 | -> | Plus |
| arm_3R | 17863679..17864005 | 1733..2059 | 100 | | Plus |
BS08887.pep Sequence
Translation from 16 to 2058
> BS08887.pep
MSIREKLLMKKIVKREKMKKELSQKKGNKNAQKQEPPKQNGNKPSKKPEK
LSKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDD
EQEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLL
PNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEATLR
AIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELIN
KLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQ
VESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIG
FEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQ
DTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHH
ELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIP
QVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLK
AAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDS
HQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGF
GFYKKMNEGSASKQRHFKQVNRDQAKKFMR*
BS08887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-PC | 680 | CG6375-PC | 1..680 | 1..680 | 3483 | 100 | Plus |
| pit-PA | 680 | CG6375-PA | 1..680 | 1..680 | 3483 | 100 | Plus |
| pit-PB | 680 | CG6375-PB | 1..680 | 1..680 | 3483 | 100 | Plus |
| CG5800-PA | 826 | CG5800-PA | 79..531 | 194..629 | 774 | 38.2 | Plus |
| CG8611-PA | 974 | CG8611-PA | 138..883 | 11..645 | 689 | 27.4 | Plus |
