Clone BS08891 Report

Search the DGRC for BS08891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG4617-RA
Protein status:BS08891.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08891.3prime Sequence

946 bp (857 high quality bases) assembled on 2006-01-18

> BS08891.3prime
ATGGTCTAGAAAGCTTTCATAGTCCGGGCATTACGTAGGCGATGTTGTCG
AGCGTGTCGGCCAGATTTTTGCTCAACTGCACATTGTTCTCCATGCCGGG
TATTTGCGTGGTCATGCAGAGCAGCGGTCCCATGGCGCAGAGCAGGCTGT
CGAGGAGCACGGACAAGCTGCCCGATAGCGCCACGTATCCATTGTGCTTC
TTCAGTCGCTCGCCAATCACAGTCAGGCTCTCGCCGAGCAGCTTCAGATG
TGCGGCCGCATCGATCACTTCGATGCTGGTCTTTTGCACCTCCTCCTGCT
TCAGCTGACCCCCAGTCCGGCCGCTGACGTCCGCATCCGTGTGCACTTGC
GCTTGTTTCGTCGCGCTCTTCGAGACCTGCGACCTGGCACTTCGTGTGCT
GATGCTGCGCCGCTGTGTGTTGGTGCCAGTCGCTGCTGCTGCCGCCGCTG
CGGCAGCCGCTTCTATTGAGGATTGCTGCCGATCGGCGGCCAGTTTTCGA
GTGCGACTTGTTGTCGCACGGTTCTGAAAGATCGTCTCGTGCTGCGTGGC
ATCTGCCAGAGCCGTGCTGCCGTTGCTCGCCGGCTGGGTTGCACCGTTTG
CAGCGGTTTTGTCGCGAGTTTTGGCCCTGGACGCCTCGATTTTGGCCTTG
CGCCGCCAGGTGTTCTTGTCCCGATTGGAAACGTTCGCCCACAGCTCGCT
GAGGCGTCTGGTCGCGCTGGTGAAGTCTAGATCCTGGAGATCCTTCTGTC
GCGCCTCCTTGGCCCACAGACTGTAGGCGGTGTAGCGCTGCTTGCCCTTG
TCCTTGCGCTGCACCTTGGCACTCACCACCTTGCCGTCCTTGAGCACCTG
CCGCTTGTTGGACTTCTCGCGCATGTAAAGACTCTGACGGACGGATGACT
CTTGGCTGGTGGGCTCCGCCTGGACACCATCGACGATATCTGCACC

BS08891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-PA 1257 CG4617-RA 334..1257 940..17 4595 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-RC 1819 CG4617-RC 424..1355 946..16 4620 99.8 Minus
CG4617-RA 1694 CG4617-RA 424..1355 946..16 4620 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7103019..7103731 16..728 3565 100 Plus
X 23542271 X 7103792..7104005 727..940 1055 99.5 Plus
Blast to na_te.dros performed on 2015-02-03 08:54:13 has no hits.

BS08891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:10 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-PA 327..1257 17..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:15 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-PA 327..1257 17..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:37 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 424..1355 16..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:51 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 424..1355 16..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:51 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7103019..7103729 16..726 100 <- Plus
X 7103792..7104012 727..946 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:37 Download gff for BS08891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6997052..6997762 16..726 100 <- Plus
arm_X 6997825..6998045 727..946 99   Plus

BS08891.5prime Sequence

899 bp (889 high quality bases) assembled on 2006-01-18

> BS08891.5prime
GAAGTTATCAGTCGACATGGAGTCCCCAACCTCGCACCTGGTGGCCAAGG
ATTTCCAGGTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAAAAAATCG
TCGAAATTGTTGGATTTTGAATCTCCGGATGAGATCGAGAAGCGCACAAG
GCGTCACAGTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGCGGCAGGC
CATCGAATGCGCTGCGTGATCTGGATCTTGACCAGGAGATGCTCGTGGAT
GATGGCATTATCTCGGATAGCGAGGAATTCCATCCGGATACAACGGCAAC
GGTCGTGGCCATTCTGAATTCCGACGATGAACTGGACAATCTGGTGCAGG
ATATCGTCGATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTCATCCGTC
CGTCAGAGTCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGGTGCTCAA
GGACGGCAAGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAGGGCAAGC
AGCGCTACACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACAGAAGGAT
CTCCAGGATCTAGACTTCACCAGCGCGACCAGACGCCTCAGCGAGCTGTG
GGCGAACGTTTCCAATCGGGACAAGAACACCTGGCGGCGCAAGGCCAAAA
TCGAGGCGTCCAGGGCCAAAACTCGCGACAAAACCGCTGCAAACGGTGCA
ACCCAGCCGGCGAGCAACGGCAGCACGGCTCTGGCAGATGCCACGCAGCA
CGAGACGATCTTTCAGAACCGTGCGACAACAAGTCGCACTCGAAAACTGG
CCGCCGATCGGCAGCAATCCTCAATAGAAGCGGCTGCCGCAGCGGCGGCA
GCAGCAGCGACTGGCACCAACACACAGCGGCGCAGCATCAGCACACGAA

BS08891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-PA 1257 CG4617-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-RC 1819 CG4617-RC 96..980 15..899 4425 100 Plus
CG4617-RA 1694 CG4617-RA 96..980 15..899 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7103792..7104305 563..50 2570 100 Minus
X 23542271 X 7103394..7103731 899..562 1690 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:33:17 has no hits.

BS08891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:11 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:16 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:12 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 93..980 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:03 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 93..980 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:03 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7103394..7103729 564..899 100 <- Minus
X 7103792..7104304 51..563 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:12 Download gff for BS08891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6997427..6997762 564..899 100 <- Minus
arm_X 6997825..6998337 51..563 100 <- Minus

BS08891.complete Sequence

1289 bp (1289 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ638818

> BS08891.complete
GAAGTTATCAGTCGACATGGAGTCCCCAACCTCGCACCTGGTGGCCAAGG
ATTTCCAGGTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAAAAAATCG
TCGAAATTGTTGGATTTTGAATCTCCGGATGAGATCGAGAAGCGCACAAG
GCGTCACAGTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGCGGCAGGC
CATCGAATGCGCTGCGTGATCTGGATCTTGACCAGGAGATGCTCGTGGAT
GATGGCATTATCTCGGATAGCGAGGAATTCCATCCGGATACAACGGCAAC
GGTCGTGGCCATTCTGAATTCCGACGATGAACTGGACAATCTGGTGCAGG
ATATCGTCGATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTCATCCGTC
CGTCAGAGTCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGGTGCTCAA
GGACGGCAAGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAGGGCAAGC
AGCGCTACACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACAGAAGGAT
CTCCAGGATCTAGACTTCACCAGCGCGACCAGACGCCTCAGCGAGCTGTG
GGCGAACGTTTCCAATCGGGACAAGAACACCTGGCGGCGCAAGGCCAAAA
TCGAGGCGTCCAGGGCCAAAACTCGCGACAAAACCGCTGCAAACGGTGCA
ACCCAGCCGGCGAGCAACGGCAGCACGGCTCTGGCAGATGCCACGCAGCA
CGAGACGATCTTTCAGAACCGTGCGACAACAAGTCGCACTCGAAAACTGG
CCGCCGATCGGCAGCAATCCTCAATAGAAGCGGCTGCCGCAGCGGCGGCA
GCAGCAGCGACTGGCACCAACACACAGCGGCGCAGCATCAGCACACGAAG
TGCCAGGTCGCAGGTCTCGAAGAGCGCGACGAAACAAGCGCAAGTGCACA
CGGATGCGGACGTCAGCGGCCGGACTGGGGGTCAGCTGAAGCAGGAGGAG
GTGCAAAAGACCAGCATCGAAGTGATCGATGCGGCCGCACATCTGAAGCT
GCTCGGCGAGAGCCTGACTGTGATTGGCGAGCGACTGAAGAAGCACAATG
GATACGTGGCGCTATCGGGCAGCTTGTCCGTGCTCCTCGACAGCCTGCTC
TGCGCCATGGGACCGCTGCTCTGCATGACCACGCAAATACCCGGCATGGA
GAACAATGTGCAGTTGAGCAAAAATCTGGCCGACACGCTCGACAACATCG
CCTACGTAATGCCCGGACTATGAAAGCTTTCTAGACCAT

BS08891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-RC 1257 CG4617-PC 1..1257 17..1273 6285 100 Plus
CG4617-RA 1257 CG4617-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-RC 1819 CG4617-RC 96..1355 15..1274 6300 100 Plus
CG4617-RA 1694 CG4617-RA 96..1355 15..1274 6300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7103019..7103731 1274..562 3565 100 Minus
X 23542271 X 7103792..7104305 563..50 2570 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:49:14 has no hits.

BS08891.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:31 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:32 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 100..1362 9..1274 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:14 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 98..1353 17..1272 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:32 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 100..1362 9..1274 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:43 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 98..1353 17..1272 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:43 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
X 7104361..7104394 17..50 100   Minus
X 7103021..7103729 564..1272 100 <- Minus
X 7103792..7104304 51..563 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:14 Download gff for BS08891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6997054..6997762 564..1272 100 <- Minus
arm_X 6997825..6998337 51..563 100 <- Minus
arm_X 6998394..6998427 17..50 100   Minus

BS08891.pep Sequence

Translation from 16 to 1272

> BS08891.pep
MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEKRTRRHSGA
RQPARYSGRGRPSNALRDLDLDQEMLVDDGIISDSEEFHPDTTATVVAIL
NSDDELDNLVQDIVDGVQAEATSQESSVRQSLYMREKSNKRQVLKDGKVV
SAKVQRKDKGKQRYTAYSLWAKEARQKDLQDLDFTSATRRLSELWANVSN
RDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQ
NRATTSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQV
SKSATKQAQVHTDADVSGRTGGQLKQEEVQKTSIEVIDAAAHLKLLGESL
TVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPLLCMTTQIPGMENNVQL
SKNLADTLDNIAYVMPGL*

BS08891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-PC 418 CG4617-PC 1..418 1..418 2072 100 Plus
CG4617-PA 418 CG4617-PA 1..418 1..418 2072 100 Plus