Clone BS08892 Report

Search the DGRC for BS08892

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG4949-RA
Protein status:BS08892.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08892.3prime Sequence

624 bp (623 high quality bases) assembled on 2006-01-18

> BS08892.3prime
ATGGTCTAGAAAGCTTCTAGGCGAATCTCTGGGAGACCATGATCTTGGCC
GAGAGCTTGGCAAAATTCGTGTGGCACTCGTTGCCGTGGAAATAGAGTCC
AATAAGCAGCTTGAACTGGGCTGCTGACATGGGATACGGTTCCTGCGACA
TGACCACAATGGTGTCGATGCTTTTGCCCGCCTTCTGTTCCGCCAGATTG
GCCAGGATTTCGCGGTAATTCACAAAGGATGCGGAGCACTTGGCAATTTG
CCGGACCATTTTGTTCGTGGAGCACTGCTGCATCACAGGACGCAGTAGTG
CATCCAAAACGAGCGACTGCAGATCAAAGACTATCAAATCGGGACTGCGC
AAGGATTCGGCGCTATCCTGCATTTCCAGCATGCGAAGCGGGGTGCTCTC
CACATCCACCAGTTGCAGAATGGTCAGGTATTTGCTGCAGTTATGGGCCT
CCCATGGATAGCGCTTTGCCATTCCCTGCTGGCGACTGGTGATCAGTAAG
ACGCGCTTTTCTTTGGTGGCAAAGCGTTCGCATAGCTTTGCCAAATTAAG
GGCGTAATCCTCACTGCCCGTCAAATATATATAGTTATTGTTGCAGTCGC
TCAAACTCATGTCGACTGATAACT

BS08892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PA 594 CG4949-RA 1..594 610..17 2970 100 Minus
CG4949-PB 456 CG4949-RB 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..689 610..16 2975 100 Minus
CG4949-RA 2013 CG4949-RA 99..693 610..16 2975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079587 537..16 2610 100 Minus
X 23542271 X 17078934..17079008 610..536 375 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:59:50 has no hits.

BS08892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:12 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:18 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:28 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..693 16..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:37 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..693 16..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:37 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17078925..17079008 536..622 94 -> Minus
X 17079068..17079587 16..535 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:28 Download gff for BS08892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972958..16973041 536..622 94 -> Minus
arm_X 16973101..16973620 16..535 100   Minus

BS08892.5prime Sequence

624 bp (623 high quality bases) assembled on 2006-01-18

> BS08892.5prime
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCTAGAAGCTTTCTAGACC

BS08892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PA 594 CG4949-RA 1..594 17..610 2970 100 Plus
CG4949-PB 456 CG4949-RB 1..456 155..610 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..689 17..611 2975 100 Plus
CG4949-RA 2013 CG4949-RA 99..693 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079587 90..611 2610 100 Plus
X 23542271 X 17078934..17079008 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:31:09 has no hits.

BS08892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:12 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:19 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:24 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..693 5..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:46 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 90..693 5..611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:46 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17078925..17079008 5..91 94 -> Plus
X 17079068..17079587 92..611 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:24 Download gff for BS08892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972958..16973041 5..91 94 -> Plus
arm_X 16973101..16973620 92..611 100   Plus

BS08892.complete Sequence

626 bp (626 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636313

> BS08892.complete
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCTAGAAGCTTTCTAGACCAT

BS08892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 594 CG4949-PC 1..594 17..610 2970 100 Plus
CG4949-RA 594 CG4949-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RC 2339 CG4949-RC 95..689 17..611 2975 100 Plus
CG4949-RA 2013 CG4949-RA 99..693 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17079587 90..611 2610 100 Plus
X 23542271 X 17078934..17079008 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:00:36 has no hits.

BS08892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:33 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:34 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 54..657 5..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:49 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 99..692 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:33 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 54..657 5..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:35 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 99..692 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:35 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
X 17078934..17079008 17..91 100 -> Plus
X 17079068..17079586 92..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:49 Download gff for BS08892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972967..16973041 17..91 100 -> Plus
arm_X 16973101..16973619 92..610 100   Plus

BS08892.pep Sequence

Translation from 16 to 609

> BS08892.pep
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFA*

BS08892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PC 197 CG4949-PC 1..197 1..197 1001 100 Plus
CG4949-PA 197 CG4949-PA 1..197 1..197 1001 100 Plus