Clone Sequence Records
BS08892.3prime Sequence
624 bp (623 high quality bases) assembled on 2006-01-18
> BS08892.3prime
ATGGTCTAGAAAGCTTCTAGGCGAATCTCTGGGAGACCATGATCTTGGCC
GAGAGCTTGGCAAAATTCGTGTGGCACTCGTTGCCGTGGAAATAGAGTCC
AATAAGCAGCTTGAACTGGGCTGCTGACATGGGATACGGTTCCTGCGACA
TGACCACAATGGTGTCGATGCTTTTGCCCGCCTTCTGTTCCGCCAGATTG
GCCAGGATTTCGCGGTAATTCACAAAGGATGCGGAGCACTTGGCAATTTG
CCGGACCATTTTGTTCGTGGAGCACTGCTGCATCACAGGACGCAGTAGTG
CATCCAAAACGAGCGACTGCAGATCAAAGACTATCAAATCGGGACTGCGC
AAGGATTCGGCGCTATCCTGCATTTCCAGCATGCGAAGCGGGGTGCTCTC
CACATCCACCAGTTGCAGAATGGTCAGGTATTTGCTGCAGTTATGGGCCT
CCCATGGATAGCGCTTTGCCATTCCCTGCTGGCGACTGGTGATCAGTAAG
ACGCGCTTTTCTTTGGTGGCAAAGCGTTCGCATAGCTTTGCCAAATTAAG
GGCGTAATCCTCACTGCCCGTCAAATATATATAGTTATTGTTGCAGTCGC
TCAAACTCATGTCGACTGATAACT
BS08892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PA | 594 | CG4949-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
CG4949-PB | 456 | CG4949-RB | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..689 | 610..16 | 2975 | 100 | Minus |
CG4949-RA | 2013 | CG4949-RA | 99..693 | 610..16 | 2975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079587 | 537..16 | 2610 | 100 | Minus |
X | 23542271 | X | 17078934..17079008 | 610..536 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:59:50 has no hits.
BS08892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:12 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:18 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:28 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..693 | 16..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:37 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..693 | 16..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:37 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078925..17079008 | 536..622 | 94 | -> | Minus |
X | 17079068..17079587 | 16..535 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:28 Download gff for
BS08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972958..16973041 | 536..622 | 94 | -> | Minus |
arm_X | 16973101..16973620 | 16..535 | 100 | | Minus |
BS08892.5prime Sequence
624 bp (623 high quality bases) assembled on 2006-01-18
> BS08892.5prime
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCTAGAAGCTTTCTAGACC
BS08892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PA | 594 | CG4949-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG4949-PB | 456 | CG4949-RB | 1..456 | 155..610 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..689 | 17..611 | 2975 | 100 | Plus |
CG4949-RA | 2013 | CG4949-RA | 99..693 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079587 | 90..611 | 2610 | 100 | Plus |
X | 23542271 | X | 17078934..17079008 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:31:09 has no hits.
BS08892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:12 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:19 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:24 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..693 | 5..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:46 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 90..693 | 5..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:46 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078925..17079008 | 5..91 | 94 | -> | Plus |
X | 17079068..17079587 | 92..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:24 Download gff for
BS08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972958..16973041 | 5..91 | 94 | -> | Plus |
arm_X | 16973101..16973620 | 92..611 | 100 | | Plus |
BS08892.complete Sequence
626 bp (626 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636313
> BS08892.complete
GAAGTTATCAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATAT
ATTTGACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAA
CGCTTTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCA
GGGAATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACC
TGACCATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTG
GAAATGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTT
TGATCTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGC
AGTGCTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCC
TTTGTGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGG
CAAAAGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGT
CAGCAGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAG
TGCCACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAG
ATTCGCCTAGAAGCTTTCTAGACCAT
BS08892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 594 | CG4949-PC | 1..594 | 17..610 | 2970 | 100 | Plus |
CG4949-RA | 594 | CG4949-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-RC | 2339 | CG4949-RC | 95..689 | 17..611 | 2975 | 100 | Plus |
CG4949-RA | 2013 | CG4949-RA | 99..693 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17079066..17079587 | 90..611 | 2610 | 100 | Plus |
X | 23542271 | X | 17078934..17079008 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:00:36 has no hits.
BS08892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:33 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:34 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 54..657 | 5..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:49 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 99..692 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:33 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 54..657 | 5..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:35 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4949-RA | 99..692 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:35 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17078934..17079008 | 17..91 | 100 | -> | Plus |
X | 17079068..17079586 | 92..610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:49 Download gff for
BS08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16972967..16973041 | 17..91 | 100 | -> | Plus |
arm_X | 16973101..16973619 | 92..610 | 100 | | Plus |
BS08892.pep Sequence
Translation from 16 to 609
> BS08892.pep
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFA*
BS08892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4949-PC | 197 | CG4949-PC | 1..197 | 1..197 | 1001 | 100 | Plus |
CG4949-PA | 197 | CG4949-PA | 1..197 | 1..197 | 1001 | 100 | Plus |