Clone Sequence Records
BS08893.3prime Sequence
813 bp (812 high quality bases) assembled on 2006-01-18
> BS08893.3prime
ATGGTCTAGAAAGCTTCTACTCCGAAATATCAATTGGAATGTATGTGGTA
AACGTGGGCGTCTCCAGCTCCTCGTGCTTCTTCATTTTGAGACTCTGTTG
CAGCTTGTAGTGATTGATAATGTCCTGGTCGGCCGGGCACGATTGTGTGA
AGGCGTCCAGCTGGTACATGTGATACATGTAGCGCCACAGGGCCGTCAAG
TGCGTCGGGATTTCAAAGTCGACAAAGTACTTGCCCGCCACACGGATGTG
CTGCAGGCGCGGCATCAGCTCACAGTCGAAGCAGCACATGGTGTCGCCGG
TGAGGAAGCGCGTGTTGCGCGCGGACAGATGATCGTTGATCTTGCGCAGA
TGCGAGAGCAGGGCGTTGTTCTTGGCCTCGTCCTTCTTTACCAGCATCAG
CTTCAACTTGACATACAGGTTCTCGATCAGGGTGGCCACCTCCTTGTCCT
GGACAAACAGATTGTAGCCGCCCGGTATGTTCTTCATGATGTGCCGCTCG
ATCTTTTCGTTCTCCAAAATGGCCAGCCCATTGTCAATGAGGATGGGCGG
GTGTGTGGCCTCAAAATTGGTACGGAAATCGGGCGGCGGCTTCTGCATAT
CCACCGTCGTCACCTTCAGGCTGATCGTCTTCAGTTCGGCCAGTAGATAT
AGGTCCATGAAGTACTCCTGGCAGAACAAACAGGCGCCCTTCCGCCTGCC
GTCGATGGTCGAGGCCTTTATGATCAATTCTATCTCGGGCACATCGAATT
TACTGCTGCCGTTCGTCTCCTGGCTCTGCTGCGATTCAACTTCCGACATG
TCGACTGATAACT
BS08893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10997-PA | 783 | Clic-RA | 1..783 | 799..17 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1082 | 799..17 | 3915 | 100 | Minus |
Clic-RA | 1839 | CG10997-RA | 300..1082 | 799..17 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 206..717 | 2560 | 100 | Plus |
X | 23542271 | X | 13813875..13813986 | 95..206 | 560 | 100 | Plus |
X | 23542271 | X | 13821924..13822008 | 715..799 | 425 | 100 | Plus |
X | 23542271 | X | 13813728..13813808 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:54:02 has no hits.
BS08893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:13 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:21 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10997-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:35 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 9..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:48 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 9..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:48 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13813723..13813805 | 9..94 | 96 | <- | Plus |
X | 13813875..13813985 | 95..205 | 100 | <- | Plus |
X | 13814377..13814886 | 206..715 | 100 | <- | Plus |
X | 13821925..13822015 | 716..810 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:35 Download gff for
BS08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13707756..13707838 | 9..94 | 96 | <- | Plus |
arm_X | 13707908..13708018 | 95..205 | 100 | <- | Plus |
arm_X | 13708410..13708919 | 206..715 | 100 | <- | Plus |
arm_X | 13715958..13716048 | 716..810 | 95 | | Plus |
BS08893.5prime Sequence
813 bp (795 high quality bases) assembled on 2006-01-18
> BS08893.5prime
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGA
AGCTTTCTAGACC
BS08893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10997-PA | 783 | Clic-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1082 | 17..799 | 3915 | 100 | Plus |
Clic-RA | 1839 | CG10997-RA | 300..1082 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 610..99 | 2560 | 100 | Minus |
X | 23542271 | X | 13813875..13813986 | 721..610 | 560 | 100 | Minus |
X | 23542271 | X | 13821924..13822008 | 101..17 | 425 | 100 | Minus |
X | 23542271 | X | 13813728..13813808 | 799..719 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:12 has no hits.
BS08893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:14 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:22 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10997-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:00 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 6..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:58 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 293..1087 | 6..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:58 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13813723..13813805 | 722..807 | 96 | <- | Minus |
X | 13813875..13813985 | 611..721 | 100 | <- | Minus |
X | 13814377..13814886 | 101..610 | 100 | <- | Minus |
X | 13821925..13822015 | 6..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:00 Download gff for
BS08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13707756..13707838 | 722..807 | 96 | <- | Minus |
arm_X | 13707908..13708018 | 611..721 | 100 | <- | Minus |
arm_X | 13708410..13708919 | 101..610 | 100 | <- | Minus |
arm_X | 13715958..13716048 | 6..100 | 95 | | Minus |
BS08893.complete Sequence
815 bp (815 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636314
> BS08893.complete
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGA
AGCTTTCTAGACCAT
BS08893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 783 | CG10997-PC | 1..783 | 17..799 | 3915 | 100 | Plus |
Clic-RA | 783 | CG10997-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-RC | 1349 | CG10997-RC | 300..1082 | 17..799 | 3915 | 100 | Plus |
Clic-RA | 1839 | CG10997-RA | 300..1082 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13814377..13814888 | 610..99 | 2560 | 100 | Minus |
X | 23542271 | X | 13813875..13813986 | 721..610 | 560 | 100 | Minus |
X | 23542271 | X | 13821924..13822008 | 101..17 | 425 | 100 | Minus |
X | 23542271 | X | 13813728..13813808 | 799..719 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:29 has no hits.
BS08893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:34 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:36 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 310..1104 | 6..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:19 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 300..1082 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:34 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 310..1104 | 6..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:09 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clic-RA | 300..1082 | 17..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:09 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13821925..13822008 | 17..100 | 100 | | Minus |
X | 13813728..13813805 | 722..799 | 100 | <- | Minus |
X | 13813875..13813985 | 611..721 | 100 | <- | Minus |
X | 13814377..13814886 | 101..610 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:19 Download gff for
BS08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13707761..13707838 | 722..799 | 100 | <- | Minus |
arm_X | 13707908..13708018 | 611..721 | 100 | <- | Minus |
arm_X | 13708410..13708919 | 101..610 | 100 | <- | Minus |
arm_X | 13715958..13716041 | 17..100 | 100 | | Minus |
BS08893.pep Sequence
Translation from 16 to 798
> BS08893.pep
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISE*
BS08893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clic-PC | 260 | CG10997-PC | 1..260 | 1..260 | 1365 | 100 | Plus |
Clic-PA | 260 | CG10997-PA | 1..260 | 1..260 | 1365 | 100 | Plus |