Clone BS08893 Report

Search the DGRC for BS08893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptClic-RA
Protein status:BS08893.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08893.3prime Sequence

813 bp (812 high quality bases) assembled on 2006-01-18

> BS08893.3prime
ATGGTCTAGAAAGCTTCTACTCCGAAATATCAATTGGAATGTATGTGGTA
AACGTGGGCGTCTCCAGCTCCTCGTGCTTCTTCATTTTGAGACTCTGTTG
CAGCTTGTAGTGATTGATAATGTCCTGGTCGGCCGGGCACGATTGTGTGA
AGGCGTCCAGCTGGTACATGTGATACATGTAGCGCCACAGGGCCGTCAAG
TGCGTCGGGATTTCAAAGTCGACAAAGTACTTGCCCGCCACACGGATGTG
CTGCAGGCGCGGCATCAGCTCACAGTCGAAGCAGCACATGGTGTCGCCGG
TGAGGAAGCGCGTGTTGCGCGCGGACAGATGATCGTTGATCTTGCGCAGA
TGCGAGAGCAGGGCGTTGTTCTTGGCCTCGTCCTTCTTTACCAGCATCAG
CTTCAACTTGACATACAGGTTCTCGATCAGGGTGGCCACCTCCTTGTCCT
GGACAAACAGATTGTAGCCGCCCGGTATGTTCTTCATGATGTGCCGCTCG
ATCTTTTCGTTCTCCAAAATGGCCAGCCCATTGTCAATGAGGATGGGCGG
GTGTGTGGCCTCAAAATTGGTACGGAAATCGGGCGGCGGCTTCTGCATAT
CCACCGTCGTCACCTTCAGGCTGATCGTCTTCAGTTCGGCCAGTAGATAT
AGGTCCATGAAGTACTCCTGGCAGAACAAACAGGCGCCCTTCCGCCTGCC
GTCGATGGTCGAGGCCTTTATGATCAATTCTATCTCGGGCACATCGAATT
TACTGCTGCCGTTCGTCTCCTGGCTCTGCTGCGATTCAACTTCCGACATG
TCGACTGATAACT

BS08893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10997-PA 783 Clic-RA 1..783 799..17 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1082 799..17 3915 100 Minus
Clic-RA 1839 CG10997-RA 300..1082 799..17 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 206..717 2560 100 Plus
X 23542271 X 13813875..13813986 95..206 560 100 Plus
X 23542271 X 13821924..13822008 715..799 425 100 Plus
X 23542271 X 13813728..13813808 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-03 08:54:02 has no hits.

BS08893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:13 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:21 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10997-PA 1..783 17..799 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:35 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 9..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:48 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 9..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:48 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13813723..13813805 9..94 96 <- Plus
X 13813875..13813985 95..205 100 <- Plus
X 13814377..13814886 206..715 100 <- Plus
X 13821925..13822015 716..810 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:35 Download gff for BS08893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707756..13707838 9..94 96 <- Plus
arm_X 13707908..13708018 95..205 100 <- Plus
arm_X 13708410..13708919 206..715 100 <- Plus
arm_X 13715958..13716048 716..810 95   Plus

BS08893.5prime Sequence

813 bp (795 high quality bases) assembled on 2006-01-18

> BS08893.5prime
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGA
AGCTTTCTAGACC

BS08893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10997-PA 783 Clic-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1082 17..799 3915 100 Plus
Clic-RA 1839 CG10997-RA 300..1082 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 610..99 2560 100 Minus
X 23542271 X 13813875..13813986 721..610 560 100 Minus
X 23542271 X 13821924..13822008 101..17 425 100 Minus
X 23542271 X 13813728..13813808 799..719 405 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:45:12 has no hits.

BS08893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:14 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:22 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10997-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:00 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 6..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:58 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 293..1087 6..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:58 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13813723..13813805 722..807 96 <- Minus
X 13813875..13813985 611..721 100 <- Minus
X 13814377..13814886 101..610 100 <- Minus
X 13821925..13822015 6..100 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:00 Download gff for BS08893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707756..13707838 722..807 96 <- Minus
arm_X 13707908..13708018 611..721 100 <- Minus
arm_X 13708410..13708919 101..610 100 <- Minus
arm_X 13715958..13716048 6..100 95   Minus

BS08893.complete Sequence

815 bp (815 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636314

> BS08893.complete
GAAGTTATCAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGA
AGCTTTCTAGACCAT

BS08893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 783 CG10997-PC 1..783 17..799 3915 100 Plus
Clic-RA 783 CG10997-PA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RC 1349 CG10997-RC 300..1082 17..799 3915 100 Plus
Clic-RA 1839 CG10997-RA 300..1082 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 610..99 2560 100 Minus
X 23542271 X 13813875..13813986 721..610 560 100 Minus
X 23542271 X 13821924..13822008 101..17 425 100 Minus
X 23542271 X 13813728..13813808 799..719 405 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:29 has no hits.

BS08893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:34 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:36 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 310..1104 6..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:19 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 300..1082 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:34 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 310..1104 6..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:09 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 300..1082 17..799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:09 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
X 13821925..13822008 17..100 100   Minus
X 13813728..13813805 722..799 100 <- Minus
X 13813875..13813985 611..721 100 <- Minus
X 13814377..13814886 101..610 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:19 Download gff for BS08893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707761..13707838 722..799 100 <- Minus
arm_X 13707908..13708018 611..721 100 <- Minus
arm_X 13708410..13708919 101..610 100 <- Minus
arm_X 13715958..13716041 17..100 100   Minus

BS08893.pep Sequence

Translation from 16 to 798

> BS08893.pep
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISE*

BS08893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-PC 260 CG10997-PC 1..260 1..260 1365 100 Plus
Clic-PA 260 CG10997-PA 1..260 1..260 1365 100 Plus