Clone Sequence Records
BS08906.3prime Sequence
924 bp (760 high quality bases) assembled on 2006-01-18
> BS08906.3prime
ATGGTCTAGAAAGCTTTCAGTAGAATATGTAATAAACGCCGATTAACAAA
AGGACGAGGAGTACAATGAACAGCTTCGACTTGATGTGATACTTCTGCTC
CAGGCTGTTCAACCAACGGTTAAAGGCCTCGGATACGCTGTTATCATTCG
GGCGCAAGGAGCGCCTGGCACGCGGCTCATAGCCGAGAGAACCGCTACCC
GCGTTTCCACTGGCCAGAGTGCGTCTGGAATACGGGCTGATGCGATCTCC
AATCCGTTCGGCTCGCAAACGAGCTAGATTCCTGGCAAATGTGCTTTCGT
ACTGGTCTTCCTTGGAATCAGTGTCGTCGCTCAGCTCGTTAGCATAGGTA
CGCTTGTAGCTGGATGAGTAGGAGGCCACCGGCGGAGCCTCTGCAGTCAC
ATAGCCTTGGGCTGCAGTACGCACAAAACTGCTATAGCGACCGGGTGCTG
GGTTGCTCGCATAGTCATAGGACCTGGTGGAACTGGTGGTCTGCGCTCTG
GCAGATGGCACAGATGGCGGCAGCACGGGAGCTGCTGTCGCTTCATAGAC
CTGTCGGCGTGGAGGCTCCACAACCTTGCTTTTGTACTCGTACGTAGTGG
TGCCGCTGCTTGCGAGCTTCGTGGTCTTCTGTCTGGCCGCGTGCTCCTGC
TCCACCAGATCTGCAGCCTGGACTAGCTGCTCGTCCTCTTCTTCATCGGA
CTCTAGGACAATCAGGGAGTTGACCTTAAGATAATTCTCCTCTCGATCAG
CGCGCTTCGAGGAAGCCGGTTGCTCAACAATGGTTTCTGGCTTCCTCAAG
GGCTCCACTACTTTCCTTTCAGACCCCGAGGAGGTGGAAGTGCGCCGGGT
CTGTACGGGTTGAGCAGCAGGAGCAGTTGTTGGCTTCCTGGCGGCAACGG
GCTCCTCGGATCGTAGGCGGTCGG
BS08906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5581-PA | 1275 | Ote-RA | 368..1275 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ote-RA | 1571 | CG5581-RA | 466..1373 | 924..17 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18275805..18276712 | 17..924 | 4540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:38 has no hits.
BS08906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:25 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-PA | 368..1275 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:36 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5581-PA | 368..1275 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:14 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 466..1373 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:08 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 466..1373 | 17..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:08 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18275805..18276712 | 17..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:14 Download gff for
BS08906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14163310..14164217 | 17..924 | 100 | | Plus |
BS08906.5prime Sequence
920 bp (807 high quality bases) assembled on 2006-01-18
> BS08906.5prime
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCC
AGGCTATGTGACTGCAGAAG
BS08906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5581-PA | 1275 | Ote-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ote-RA | 1571 | CG5581-RA | 99..1000 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18276178..18277079 | 918..17 | 4495 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:20:19 has no hits.
BS08906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:26 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-PA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:38 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5581-PA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:14 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 93..1001 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:41 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 93..1001 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:41 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18276176..18277085 | 9..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:14 Download gff for
BS08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14163681..14164590 | 9..920 | 99 | | Minus |
BS08906.complete Sequence
1307 bp (1307 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636316
> BS08906.complete
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCA
AGGCTATGTGACTGCAGAGGCTCCGCCGGTGGCCTCCTACTCATCCAGCT
ACAAGCGTACCTATGCTAACGAGCTGAGCGACGACACTGATTCCAAGGAA
GACCAGTACGAAAGCACATTTGCCAGGAATCTAGCTCGTTTGCGAGCCGA
ACGGATTGGAGATCGCATCAGCCCGTATTCCAGACGCACTCTGGCCAGTG
GAAACGCGGGTAGCGGTTCTCTCGGCTATGAGCCGCGTGCCAGGCGCTCC
TTGCGCCCGAATGATAACAGCGTATCCGAGGCCTTTAACCGTTGGTTGAA
CAGCCTGGAGCAGAAGTATCACATCAAGTCGAAGCTGTTCATTGTACTCC
TCGTCCTTTTGTTAATCGGCGTTTATTACATATTCTACTGAAAGCTTTCT
AGACCAT
BS08906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ote-RA | 1275 | CG5581-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ote-RA | 1571 | CG5581-RA | 99..1373 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18275805..18277079 | 1291..17 | 6375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:42 has no hits.
BS08906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:38 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:39 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 109..1389 | 9..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:39 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 99..1372 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:38 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 109..1389 | 9..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:25 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ote-RA | 99..1372 | 17..1290 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:25 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18275806..18277079 | 17..1290 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:39 Download gff for
BS08906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14163311..14164584 | 17..1290 | 100 | | Minus |
BS08906.pep Sequence
Translation from 16 to 1290
> BS08906.pep
MADVDDFDSLSNAELRAKMLAQGLPNIPVTDSSRKVLVKRLRASIGGQAS
PAASPKKTNRRETLAPAPGAPSAPAAASTPVDKLDGNKVAPATKARRTIT
AAEAKEPVRRLPEEAIRRRPDEADRLRSEEPVAARKPTTAPAAQPVQTRR
TSTSSGSERKVVEPLRKPETIVEQPASSKRADREENYLKVNSLIVLESDE
EEDEQLVQAADLVEQEHAARQKTTKLASSGTTTYEYKSKVVEPPRRQVYE
ATAAPVLPPSVPSARAQTTSSTRSYDYASNPAPGRYSSFVRTAAQGYVTA
EAPPVASYSSSYKRTYANELSDDTDSKEDQYESTFARNLARLRAERIGDR
ISPYSRRTLASGNAGSGSLGYEPRARRSLRPNDNSVSEAFNRWLNSLEQK
YHIKSKLFIVLLVLLLIGVYYIFY*
BS08906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ote-PA | 424 | CG5581-PA | 1..424 | 1..424 | 2116 | 100 | Plus |
| bocksbeutel-PB | 399 | CG9424-PB | 1..394 | 1..422 | 189 | 23.9 | Plus |
| bocksbeutel-PA | 351 | CG9424-PA | 1..249 | 1..283 | 173 | 25.1 | Plus |
