Clone BS08909 Report

Search the DGRC for BS08909

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG11964-RA
Protein status:BS08909.pep: full length peptide match
Sequenced Size:1778

Clone Sequence Records

BS08909.3prime Sequence

839 bp (828 high quality bases) assembled on 2006-01-18

> BS08909.3prime
ATGGTCTAGAAAGCTTTTAGAAACGATCGACTAGAGATAATATGTGGTTC
TGCTCCTGTTCCCGCCAGTCGGTGTCGCCATCGCCCAGGTTGCCAGCGTA
TTCCCTCATTATGCTGCGAATGGTCTTCATGGAAGCGCCGCGCAAGTTAA
GGATCTGCAGTACACGCTGCTTGACGGTGTCGCCAGTGGCACTGACCTCC
AGCAGGATGTAGTCGATGCGCTGCAGCGTGAACAGCCCGCCGGTCAGTCG
TTTTATATAGTTATTCTCCGCCTCCTCGTCCTCATCAATGGTGGGATCCT
TAGCCTGCTGATCGATCTCCTTGTCTATGGCTTCCACCTTGGCCAGATAC
TTGAGGTGCAGCTCCAGCAGGCGATCCACCTTCTCGTGATCATTCTCCGT
GAACTTGGCCAACATTCGCTGGCGGTGTGTGCCCTTGCAGTTTCGCAACA
TTGATGCGATTACGGAGGTCACATGCTCCTCATGCTCATCGGCGGAGATT
AGGCGCTGCTTGTTGCGCTTGGGGGTTTTCATAAAGAGTGGGAAGATGGT
GCGCAAGCCGAGAATTTCGACAAACTTGTTGCAGTTGTCTCTGCCATCCT
GGCCAGCCATGGCATGATCCAACACCTTGAGCGATCCATTTCTAGACATC
TTCTTCTCGCGCAGCATTAGGTTCATCAGCTGCAGACCCTCGCCGCTGAG
AAAACGATCGCGATTCTCGCGGGCCATCAGAGCGGAACAAAGGCAATTGA
AGAGGTTCTGCATGTACTCCTGCTCCTCGTTGCTAGCGGGATCGTGTCTC
TTGTAGACAGCCAGCTGCTGGAGCAGCACATCCACGCCA

BS08909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-PA 1746 CG11964-RA 924..1746 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-RA 1885 CG11964-RA 959..1781 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8943464..8944005 298..839 2710 100 Plus
3R 32079331 3R 8943205..8943402 103..300 990 100 Plus
3R 32079331 3R 8943058..8943144 17..103 435 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:07:38 has no hits.

BS08909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:29 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-PA 925..1746 17..838 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:42 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-PA 925..1746 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:08 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 960..1785 12..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:50 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 960..1785 12..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:50 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8943054..8943143 12..102 97 <- Plus
3R 8943205..8943400 103..298 100 <- Plus
3R 8943465..8944004 299..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:08 Download gff for BS08909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4768776..4768865 12..102 97 <- Plus
arm_3R 4768927..4769122 103..298 100 <- Plus
arm_3R 4769187..4769726 299..838 100   Plus

BS08909.5prime Sequence

949 bp (826 high quality bases) assembled on 2006-01-18

> BS08909.5prime
GAAGTTATCAGTCGACATGGACATCGGCGAACTGCTGGCGTTTAAGCCGG
AACAGACGCCAAAGCGTCCGCACGACGACGAGGACGATGAATTCGATTTG
GCGAGCTCGCACGGAAAACGGGGCGGTGTCGATGAGAAAACCAAACGCAT
GCGGCGCATCGCCGATGCCAAGGAGTCCGCACACTATGTCAAGCAAAGTG
GAGGAGCCACCGGTGGCAGTGGCACTTCCGCCTTTGAATTCGATCCGGAA
CTGACAGAGGAGGAACGCCTGAACATCCTGAAGTACGTGGAGAACGAGGA
GGCCGATGGCGATGTTCTGGATGAGCAGAGCCTGAAGAAACTGATACTGG
TGTTCGAGAAGCGTAACTTGAAGAACCAGGAGATGCGCATCAAGTTTGCC
GACAGTCCCGAGAAGTTCATGGACTCCGAGGTGGAGCTGCACACGGTAAT
CCAGGAGCTGAAGGGCGTGGCCACGGTGCCCGATCTGTATCCAATTCTCG
TGGATCTGCACGGCCTGCACAGTTTGCTCGAACTGCTGGCACATCAGAAC
ACAGACATAGCCGTGGCCGTGGTAGATCTGCTGCAAGAAGTGACCGATGT
TGATATCCTGGGCGAAAGTCAAGAGGGTGCCGAATCCTTGATTGAAGCAC
TGAGAAAAGAGCAAATCTGTGCTCTGCTTGTCCAGAATCTGGAGCGACTG
AACGAACAGGTTAAGGAGGAAGCCGATGGCGTGCATAATACGCTGGCCAT
AGTGGAAAATCTTACCGAAATCGATTCGGAATTCGTGAAGGAAGCCGCTG
AACAGGGACTGCTCGCCTGGCTGCTGAAACGGCTGCGCGGGCAGTCGCCC
TTCGATCCCAACAAACTCTACTGCAGCGAGATACTTTCCTACTTATACAA
ACGGAGAACGAGAACCGATTACTGCTGGGGTCTCTGGATGGCGTGGATG

BS08909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-PA 1746 CG11964-RA 1..873 17..889 4315 99.7 Plus
CG11964-PA 1746 CG11964-RA 875..934 890..949 275 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-RA 1885 CG11964-RA 36..969 17..949 4600 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8943995..8944900 949..45 4435 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 23:27:51 has no hits.

BS08909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:30 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-PA 1..934 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:43 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-PA 1..934 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:16 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 36..969 17..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:53 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 36..969 17..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:53 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8943995..8944898 47..949 99 <- Minus
3R 8944956..8944985 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:16 Download gff for BS08909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4769717..4770620 47..949 99 <- Minus
arm_3R 4770678..4770707 17..46 100   Minus

BS08909.complete Sequence

1778 bp assembled on 2008-08-14

GenBank Submission: FJ636317

> BS08909.complete
GAAGTTATCAGTCGACATGGACATCGGCGAACTGCTGGCGTTTAAGCCGG
AACAGACGCCAAAGCGTCCGCACGACGACGAGGACGATGAATTCGATTTG
GCGAGCTCGCACGGAAAACGGGGCGGTGTCGATGAGAAAACCAAACGCAT
GCGGCGCATCGCCGATGCCAAGGAGTCCGCACACTATGTCAAGCAAAGTG
GAGGAGCCACCGGTGGCAGTGGCACTTCCGCCTTTGAATTCGATCCGGAA
CTGACAGAGGAGGAACGCCTGAACATCCTGAAGTACGTGGAGAACGAGGA
GGCCGATGGCGATGTTCTGGATGAGCAGAGCCTGAAGAAACTGATACTGG
TGTTCGAGAAGCGTAACTTGAAGAACCAGGAGATGCGCATCAAGTTTGCC
GACAGTCCCGAGAAGTTCATGGACTCCGAGGTGGAGCTGCACACGGTAAT
CCAGGAGCTGAAGGGCGTGGCCACGGTGCCCGATCTGTATCCAATTCTCG
TGGATCTGCACGGCCTGCACAGTTTGCTCGAACTGCTGGCACATCAGAAC
ACAGACATAGCCGTGGCCGTGGTAGATCTGCTGCAAGAAGTGACCGATGT
TGATATCCTGGGCGAAAGTCAAGAGGGTGCCGAATCCTTGATTGAAGCAC
TGAGAAAAGAGCAAATCTGTGCTCTGCTTGTCCAGAATCTGGAGCGACTG
AACGAACAGGTTAAGGAGGAAGCCGATGGCGTGCATAATACGCTGGCCAT
AGTGGAAAATCTTACCGAAATCGATTCGGAATTCGTGAAGGAAGCCGCTG
AACAGGGACTGCTCGCCTGGCTGCTGAAACGGCTGCGCGGCAAGTCGCCC
TTCGATCCCAACAAACTCTACTGCAGCGAGATACTTTCCATACTTATACA
AACGGAGAACGAGAACCGATTACTGCTGGGTTCTCTGGATGGCGTGGATG
TGCTGCTCCAGCAGCTGGCTGTCTACAAGAGACACGATCCCGCTAGCAAC
GAGGAGCAGGAGTACATGCAGAACCTCTTCAATTGCCTTTGTTCCGCTCT
GATGGCCCGCGAGAATCGCGATCGTTTTCTCAGCGGCGAGGGTCTGCAGC
TGATGAACCTAATGCTGCGCGAGAAGAAGATGTCTAGAAATGGATCGCTC
AAGGTGTTGGATCATGCCATGGCTGGCCAGGATGGCAGAGACAACTGCAA
CAAGTTTGTCGAAATTCTCGGCTTGCGCACCATCTTCCCACTCTTTATGA
AAACCCCCAAGCGCAACAAGCAGCGCCTAATCTCCGCCGATGAGCATGAG
GAGCATGTGACCTCCGTAATCGCATCAATGTTGCGAAACTGCAAGGGCAC
ACACCGCCAGCGAATGTTGGCCAAGTTCACGGAGAATGATCACGAGAAGG
TGGATCGCCTGCTGGAGCTGCACCTCAAGTATCTGGCCAAGGTGGAAGCC
ATAGACAAGGAGATCGATCAGCAGGCTAAGGATCCCACCATTGATGAGGA
CGAGGAGGCGGAGAATAACTATATAAAACGACTGACCGGCGGGCTGTTCA
CGCTGCAGCGCATCGACTACATCCTGCTGGAGGTCAGTGCCACTGGCGAC
ACCGTCAAGCAGCGTGTACTGCAGATCCTTAACTTGCGCGGCGCTTCCAT
GAAGACCATTCGCAGCATAATGAGGGAATACGCTGGCAACCTGGGCGATG
GCGACACCGACTGGCGGGAACAGGAGCAGAACCACATATTATCTCTAGTC
GATCGTTTCTAAAAGCTTTCTAGACCAT

BS08909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-RA 1746 CG11964-PA 1..1746 17..1762 8730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-RA 1885 CG11964-RA 36..1781 17..1762 8730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8943464..8944900 1481..45 7185 100 Minus
3R 32079331 3R 8943205..8943402 1676..1479 990 100 Minus
3R 32079331 3R 8943058..8943144 1762..1676 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:53:10 has no hits.

BS08909.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:30 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 20..1769 17..1767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:23 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 36..1779 17..1760 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:39 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 20..1763 17..1760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:29 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 36..1779 17..1760 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:29 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8943060..8943143 1677..1760 100 <- Minus
3R 8943205..8943400 1481..1676 100 <- Minus
3R 8943465..8944898 47..1480 100 <- Minus
3R 8944956..8944985 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:23 Download gff for BS08909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4768782..4768865 1677..1760 100 <- Minus
arm_3R 4768927..4769122 1481..1676 100 <- Minus
arm_3R 4769187..4770620 47..1480 100 <- Minus
arm_3R 4770678..4770707 17..46 100   Minus

BS08909.pep Sequence

Translation from 16 to 1761

> BS08909.pep
MDIGELLAFKPEQTPKRPHDDEDDEFDLASSHGKRGGVDEKTKRMRRIAD
AKESAHYVKQSGGATGGSGTSAFEFDPELTEEERLNILKYVENEEADGDV
LDEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVELHTVIQELKG
VATVPDLYPILVDLHGLHSLLELLAHQNTDIAVAVVDLLQEVTDVDILGE
SQEGAESLIEALRKEQICALLVQNLERLNEQVKEEADGVHNTLAIVENLT
EIDSEFVKEAAEQGLLAWLLKRLRGKSPFDPNKLYCSEILSILIQTENEN
RLLLGSLDGVDVLLQQLAVYKRHDPASNEEQEYMQNLFNCLCSALMAREN
RDRFLSGEGLQLMNLMLREKKMSRNGSLKVLDHAMAGQDGRDNCNKFVEI
LGLRTIFPLFMKTPKRNKQRLISADEHEEHVTSVIASMLRNCKGTHRQRM
LAKFTENDHEKVDRLLELHLKYLAKVEAIDKEIDQQAKDPTIDEDEEAEN
NYIKRLTGGLFTLQRIDYILLEVSATGDTVKQRVLQILNLRGASMKTIRS
IMREYAGNLGDGDTDWREQEQNHILSLVDRF*

BS08909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-PA 581 CG11964-PA 1..581 1..581 2949 100 Plus