Clone Sequence Records
BS08909.3prime Sequence
839 bp (828 high quality bases) assembled on 2006-01-18
> BS08909.3prime
ATGGTCTAGAAAGCTTTTAGAAACGATCGACTAGAGATAATATGTGGTTC
TGCTCCTGTTCCCGCCAGTCGGTGTCGCCATCGCCCAGGTTGCCAGCGTA
TTCCCTCATTATGCTGCGAATGGTCTTCATGGAAGCGCCGCGCAAGTTAA
GGATCTGCAGTACACGCTGCTTGACGGTGTCGCCAGTGGCACTGACCTCC
AGCAGGATGTAGTCGATGCGCTGCAGCGTGAACAGCCCGCCGGTCAGTCG
TTTTATATAGTTATTCTCCGCCTCCTCGTCCTCATCAATGGTGGGATCCT
TAGCCTGCTGATCGATCTCCTTGTCTATGGCTTCCACCTTGGCCAGATAC
TTGAGGTGCAGCTCCAGCAGGCGATCCACCTTCTCGTGATCATTCTCCGT
GAACTTGGCCAACATTCGCTGGCGGTGTGTGCCCTTGCAGTTTCGCAACA
TTGATGCGATTACGGAGGTCACATGCTCCTCATGCTCATCGGCGGAGATT
AGGCGCTGCTTGTTGCGCTTGGGGGTTTTCATAAAGAGTGGGAAGATGGT
GCGCAAGCCGAGAATTTCGACAAACTTGTTGCAGTTGTCTCTGCCATCCT
GGCCAGCCATGGCATGATCCAACACCTTGAGCGATCCATTTCTAGACATC
TTCTTCTCGCGCAGCATTAGGTTCATCAGCTGCAGACCCTCGCCGCTGAG
AAAACGATCGCGATTCTCGCGGGCCATCAGAGCGGAACAAAGGCAATTGA
AGAGGTTCTGCATGTACTCCTGCTCCTCGTTGCTAGCGGGATCGTGTCTC
TTGTAGACAGCCAGCTGCTGGAGCAGCACATCCACGCCA
BS08909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-PA | 1746 | CG11964-RA | 924..1746 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-RA | 1885 | CG11964-RA | 959..1781 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8943464..8944005 | 298..839 | 2710 | 100 | Plus |
3R | 32079331 | 3R | 8943205..8943402 | 103..300 | 990 | 100 | Plus |
3R | 32079331 | 3R | 8943058..8943144 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:07:38 has no hits.
BS08909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:29 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-PA | 925..1746 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:42 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-PA | 925..1746 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:08 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 960..1785 | 12..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:50 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 960..1785 | 12..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:50 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8943054..8943143 | 12..102 | 97 | <- | Plus |
3R | 8943205..8943400 | 103..298 | 100 | <- | Plus |
3R | 8943465..8944004 | 299..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:08 Download gff for
BS08909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4768776..4768865 | 12..102 | 97 | <- | Plus |
arm_3R | 4768927..4769122 | 103..298 | 100 | <- | Plus |
arm_3R | 4769187..4769726 | 299..838 | 100 | | Plus |
BS08909.5prime Sequence
949 bp (826 high quality bases) assembled on 2006-01-18
> BS08909.5prime
GAAGTTATCAGTCGACATGGACATCGGCGAACTGCTGGCGTTTAAGCCGG
AACAGACGCCAAAGCGTCCGCACGACGACGAGGACGATGAATTCGATTTG
GCGAGCTCGCACGGAAAACGGGGCGGTGTCGATGAGAAAACCAAACGCAT
GCGGCGCATCGCCGATGCCAAGGAGTCCGCACACTATGTCAAGCAAAGTG
GAGGAGCCACCGGTGGCAGTGGCACTTCCGCCTTTGAATTCGATCCGGAA
CTGACAGAGGAGGAACGCCTGAACATCCTGAAGTACGTGGAGAACGAGGA
GGCCGATGGCGATGTTCTGGATGAGCAGAGCCTGAAGAAACTGATACTGG
TGTTCGAGAAGCGTAACTTGAAGAACCAGGAGATGCGCATCAAGTTTGCC
GACAGTCCCGAGAAGTTCATGGACTCCGAGGTGGAGCTGCACACGGTAAT
CCAGGAGCTGAAGGGCGTGGCCACGGTGCCCGATCTGTATCCAATTCTCG
TGGATCTGCACGGCCTGCACAGTTTGCTCGAACTGCTGGCACATCAGAAC
ACAGACATAGCCGTGGCCGTGGTAGATCTGCTGCAAGAAGTGACCGATGT
TGATATCCTGGGCGAAAGTCAAGAGGGTGCCGAATCCTTGATTGAAGCAC
TGAGAAAAGAGCAAATCTGTGCTCTGCTTGTCCAGAATCTGGAGCGACTG
AACGAACAGGTTAAGGAGGAAGCCGATGGCGTGCATAATACGCTGGCCAT
AGTGGAAAATCTTACCGAAATCGATTCGGAATTCGTGAAGGAAGCCGCTG
AACAGGGACTGCTCGCCTGGCTGCTGAAACGGCTGCGCGGGCAGTCGCCC
TTCGATCCCAACAAACTCTACTGCAGCGAGATACTTTCCTACTTATACAA
ACGGAGAACGAGAACCGATTACTGCTGGGGTCTCTGGATGGCGTGGATG
BS08909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-PA | 1746 | CG11964-RA | 1..873 | 17..889 | 4315 | 99.7 | Plus |
CG11964-PA | 1746 | CG11964-RA | 875..934 | 890..949 | 275 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-RA | 1885 | CG11964-RA | 36..969 | 17..949 | 4600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8943995..8944900 | 949..45 | 4435 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:27:51 has no hits.
BS08909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:30 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-PA | 1..934 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:43 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-PA | 1..934 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:16 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 36..969 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:53 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 36..969 | 17..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:53 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8943995..8944898 | 47..949 | 99 | <- | Minus |
3R | 8944956..8944985 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:16 Download gff for
BS08909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4769717..4770620 | 47..949 | 99 | <- | Minus |
arm_3R | 4770678..4770707 | 17..46 | 100 | | Minus |
BS08909.complete Sequence
1778 bp assembled on 2008-08-14
GenBank Submission: FJ636317
> BS08909.complete
GAAGTTATCAGTCGACATGGACATCGGCGAACTGCTGGCGTTTAAGCCGG
AACAGACGCCAAAGCGTCCGCACGACGACGAGGACGATGAATTCGATTTG
GCGAGCTCGCACGGAAAACGGGGCGGTGTCGATGAGAAAACCAAACGCAT
GCGGCGCATCGCCGATGCCAAGGAGTCCGCACACTATGTCAAGCAAAGTG
GAGGAGCCACCGGTGGCAGTGGCACTTCCGCCTTTGAATTCGATCCGGAA
CTGACAGAGGAGGAACGCCTGAACATCCTGAAGTACGTGGAGAACGAGGA
GGCCGATGGCGATGTTCTGGATGAGCAGAGCCTGAAGAAACTGATACTGG
TGTTCGAGAAGCGTAACTTGAAGAACCAGGAGATGCGCATCAAGTTTGCC
GACAGTCCCGAGAAGTTCATGGACTCCGAGGTGGAGCTGCACACGGTAAT
CCAGGAGCTGAAGGGCGTGGCCACGGTGCCCGATCTGTATCCAATTCTCG
TGGATCTGCACGGCCTGCACAGTTTGCTCGAACTGCTGGCACATCAGAAC
ACAGACATAGCCGTGGCCGTGGTAGATCTGCTGCAAGAAGTGACCGATGT
TGATATCCTGGGCGAAAGTCAAGAGGGTGCCGAATCCTTGATTGAAGCAC
TGAGAAAAGAGCAAATCTGTGCTCTGCTTGTCCAGAATCTGGAGCGACTG
AACGAACAGGTTAAGGAGGAAGCCGATGGCGTGCATAATACGCTGGCCAT
AGTGGAAAATCTTACCGAAATCGATTCGGAATTCGTGAAGGAAGCCGCTG
AACAGGGACTGCTCGCCTGGCTGCTGAAACGGCTGCGCGGCAAGTCGCCC
TTCGATCCCAACAAACTCTACTGCAGCGAGATACTTTCCATACTTATACA
AACGGAGAACGAGAACCGATTACTGCTGGGTTCTCTGGATGGCGTGGATG
TGCTGCTCCAGCAGCTGGCTGTCTACAAGAGACACGATCCCGCTAGCAAC
GAGGAGCAGGAGTACATGCAGAACCTCTTCAATTGCCTTTGTTCCGCTCT
GATGGCCCGCGAGAATCGCGATCGTTTTCTCAGCGGCGAGGGTCTGCAGC
TGATGAACCTAATGCTGCGCGAGAAGAAGATGTCTAGAAATGGATCGCTC
AAGGTGTTGGATCATGCCATGGCTGGCCAGGATGGCAGAGACAACTGCAA
CAAGTTTGTCGAAATTCTCGGCTTGCGCACCATCTTCCCACTCTTTATGA
AAACCCCCAAGCGCAACAAGCAGCGCCTAATCTCCGCCGATGAGCATGAG
GAGCATGTGACCTCCGTAATCGCATCAATGTTGCGAAACTGCAAGGGCAC
ACACCGCCAGCGAATGTTGGCCAAGTTCACGGAGAATGATCACGAGAAGG
TGGATCGCCTGCTGGAGCTGCACCTCAAGTATCTGGCCAAGGTGGAAGCC
ATAGACAAGGAGATCGATCAGCAGGCTAAGGATCCCACCATTGATGAGGA
CGAGGAGGCGGAGAATAACTATATAAAACGACTGACCGGCGGGCTGTTCA
CGCTGCAGCGCATCGACTACATCCTGCTGGAGGTCAGTGCCACTGGCGAC
ACCGTCAAGCAGCGTGTACTGCAGATCCTTAACTTGCGCGGCGCTTCCAT
GAAGACCATTCGCAGCATAATGAGGGAATACGCTGGCAACCTGGGCGATG
GCGACACCGACTGGCGGGAACAGGAGCAGAACCACATATTATCTCTAGTC
GATCGTTTCTAAAAGCTTTCTAGACCAT
BS08909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-RA | 1746 | CG11964-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-RA | 1885 | CG11964-RA | 36..1781 | 17..1762 | 8730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8943464..8944900 | 1481..45 | 7185 | 100 | Minus |
3R | 32079331 | 3R | 8943205..8943402 | 1676..1479 | 990 | 100 | Minus |
3R | 32079331 | 3R | 8943058..8943144 | 1762..1676 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:53:10 has no hits.
BS08909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:30 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 20..1769 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:23 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 36..1779 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:39 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 20..1763 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:29 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11964-RA | 36..1779 | 17..1760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:29 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8943060..8943143 | 1677..1760 | 100 | <- | Minus |
3R | 8943205..8943400 | 1481..1676 | 100 | <- | Minus |
3R | 8943465..8944898 | 47..1480 | 100 | <- | Minus |
3R | 8944956..8944985 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:23 Download gff for
BS08909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4768782..4768865 | 1677..1760 | 100 | <- | Minus |
arm_3R | 4768927..4769122 | 1481..1676 | 100 | <- | Minus |
arm_3R | 4769187..4770620 | 47..1480 | 100 | <- | Minus |
arm_3R | 4770678..4770707 | 17..46 | 100 | | Minus |
BS08909.pep Sequence
Translation from 16 to 1761
> BS08909.pep
MDIGELLAFKPEQTPKRPHDDEDDEFDLASSHGKRGGVDEKTKRMRRIAD
AKESAHYVKQSGGATGGSGTSAFEFDPELTEEERLNILKYVENEEADGDV
LDEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVELHTVIQELKG
VATVPDLYPILVDLHGLHSLLELLAHQNTDIAVAVVDLLQEVTDVDILGE
SQEGAESLIEALRKEQICALLVQNLERLNEQVKEEADGVHNTLAIVENLT
EIDSEFVKEAAEQGLLAWLLKRLRGKSPFDPNKLYCSEILSILIQTENEN
RLLLGSLDGVDVLLQQLAVYKRHDPASNEEQEYMQNLFNCLCSALMAREN
RDRFLSGEGLQLMNLMLREKKMSRNGSLKVLDHAMAGQDGRDNCNKFVEI
LGLRTIFPLFMKTPKRNKQRLISADEHEEHVTSVIASMLRNCKGTHRQRM
LAKFTENDHEKVDRLLELHLKYLAKVEAIDKEIDQQAKDPTIDEDEEAEN
NYIKRLTGGLFTLQRIDYILLEVSATGDTVKQRVLQILNLRGASMKTIRS
IMREYAGNLGDGDTDWREQEQNHILSLVDRF*
BS08909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11964-PA | 581 | CG11964-PA | 1..581 | 1..581 | 2949 | 100 | Plus |