Clone BS08910 Report

Search the DGRC for BS08910

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG17600-RA
Protein status:BS08910.pep: full length peptide match
Sequenced Size:1835

Clone Sequence Records

BS08910.3prime Sequence

902 bp (801 high quality bases) assembled on 2006-01-18

> BS08910.3prime
ATGGTCTAGAAAGCTTTCACATCACCACATCCCGGCAAACGATCTTCGTT
TTGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGA
ATAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGC
TATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCG
TCCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGA
CTTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTG
TGCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAG
GTCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTA
CTGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCG
GAGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCA
GCGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCG
GACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCG
CTAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATCGCCTTG
ATGTACTGGTCCACCTTCTGTTGGTCCAGAGCGATTCCCGAAGCATTCGA
CTTGATAATCACGTCGCGAAGCTCACTATGTTCCGACTTAGTGCAAATCT
GAAGGGCGCAACGATAGACGGATACAATACTGACCACAAAATGAAGAAAC
AGGGNCAAAATTAGGCCGCAGGCAGCGGAAACCTCGCTGTTGGTATCGAT
CAAGTCGAACTGTTCACCCTTTTGCTCCGCCATCCTGTTGAGGTCCCTTG
AC

BS08910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 918..1803 902..17 4386 99.7 Minus
CG17600-PB 627 CG17600-RB 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RA 2470 CG17600-RA 1379..2264 902..17 4404 99.8 Minus
CG17600-RD 2398 CG17600-RD 1298..2192 902..17 4304 98.8 Minus
CG17600-RC 973 CG17600-RC 47..767 737..17 3605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541818 491..17 2375 100 Minus
X 23542271 X 22540938..22541068 621..491 655 100 Minus
X 23542271 X 22529268..22529393 861..736 604 98.4 Minus
X 23542271 X 22540760..22540879 737..618 600 100 Minus
X 23542271 X 22529170..22529212 902..860 215 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:13:14 has no hits.

BS08910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:31 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PA 918..1803 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:45 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PA 918..1803 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:23 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1379..2264 17..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:53 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1379..2264 17..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:53 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22529170..22529212 860..902 100 -> Minus
X 22529270..22529391 738..859 98 -> Minus
X 22540760..22540877 620..737 100 -> Minus
X 22540940..22541068 491..619 100 -> Minus
X 22541345..22541818 17..490 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:23 Download gff for BS08910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21931006..21931048 860..902 100 -> Minus
arm_X 21931106..21931227 738..859 98 -> Minus
arm_X 21942596..21942713 620..737 100 -> Minus
arm_X 21942776..21942904 491..619 100 -> Minus
arm_X 21943181..21943654 17..490 100   Minus

BS08910.5prime Sequence

930 bp (831 high quality bases) assembled on 2006-01-18

> BS08910.5prime
GAAGTTATCAGTCGACATGACAGAGACCAGTAATCAGCAGCCTGGCGGCG
AAGATTTCAATGGCCGCCACTCGGCATCGCCGGCCCGCACCATTGATTCG
CATGATTCCACCACCGGCAGCATGGATACCATTGTGGATCGCAGCCTGAA
TCCTGAGGAACTCCATCAGGTGGTGACCACCATCGAACATAGCACGAATA
CCACGAACTTGGCGGGATCGGGCGGTAGTCTGACCAACTCGCAAATCGGC
ATGCTTCAACGGGATGAGAATCGAAAACAGCAGGAGGACCAGGAGCAGGC
GCGCCAGGATGCCCAAAGTCACATCTATTCGAGTCCTGTCTACGATGAGA
AGCCGCCGGCGGTGAAACTCCTATCCGCCGCCCTAGACTTGGATGCCCAA
AAATCCCAGGCAAACAATGATGACGATAATAAGCCCAATCTTATTTCGCA
CCAAGAGTTCAAACAACAGCTGCAGGAAGCTATTGCTTCGCGGCAACCAA
ACCAGGTGAATGGCACTAAGAGTGGGGCCACCACTTTGGACTCCAGGATC
AGTCGTAAACAGCGCTGTCCACCGGAATTTATTAAGTACAAGGAGGGCAG
CGAGGGTGGAGGCAGTGGCTCATCGCTTTCCTCGAAAGATCGGCGCAAGC
GCAAGGCGAGCAATGAATGCTGCTCGGCATTTCCACTGCAAATAGTGTTG
GGCACTCTCCAGTTGCTCCTGGCCATATCGCTGGTGGCCCTGGGATCACT
TCTGATCGTCCGAGAGGCAGCGCTCTCACTGGCGGGATGCGGCATCTGGA
CGGGATTGATAGCAGCCGTTACGGGCTCCCTTGGAGTGGTGAGCATGCGC
AAAACCCAGACAGCGTTTTTGGCCCTCAGTTTGGTCTGCATCGCCAGCAG
CACCCTGGCTCTGGCTATTTCCGGCGTGGG

BS08910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 1..914 17..930 4570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RD 2398 CG17600-RD 371..1294 7..930 4575 99.7 Plus
CG17600-RA 2470 CG17600-RA 452..1375 7..930 4575 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22528083..22528583 7..507 2460 99.4 Plus
X 23542271 X 22528739..22529166 503..930 2140 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:30:59 has no hits.

BS08910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:32 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:46 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:35 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 452..1375 7..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:52 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 452..1375 7..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:52 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22528083..22528581 7..505 99 -> Plus
X 22528742..22529166 506..930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:35 Download gff for BS08910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21929919..21930417 7..505 99 -> Plus
arm_X 21930578..21931002 506..930 100   Plus

BS08910.complete Sequence

1835 bp assembled on 2009-08-24

GenBank Submission: KX800999

> BS08910.complete
GAAGTTATCAGTCGACATGACAGAGACCAGTAATCAGCAGCCTGGCGGCG
AAGATTTCAATGGCCGCCACTCGGCATCGCCGGCCCGCACCATTGATTCG
CATGATTCCACCACCGGCAGCATGGATACCATTGTGGATCGCAGCCTGAA
TCCTGAGGAACTCCATCAGGTGGTGACCACCATCGAACATAGCACGAATA
CCACGAACTTGGCGGGATCGGGCGGTAGTCTGACCAACTCGCAAATCGGC
ATGCTTCAACGGGATGAGAATCGAAAACAGCAGGAGGACCAGGAGCAGGC
GCGCCAGGATGCCCAAAGTCACATCTATTCGAGTCCTGTCTACGATGAGA
AGCCGCCGGCGGTGAAACTCCTATCCGCCGCCCTAGACTTGGATGCCCAA
AAATCCCAGGCAAACAATGATGACGATAATAAGCCCAATCTTATTTCGCA
CCAAGAGTTCAAACAACAGCTGCAGGAAGCTATTGCTTCGCGGCAACCAA
ACCAGGTGAATGGCACTAAGAGTGGGGCCACCACTTTGGACTCCAGGATC
AGTCGTAAACAGCGCTGTCCACCGGAATTTATTAAGTACAAGGAGGGCAG
CGAGGGTGGAGGCAGTGGCTCATCGCTTTCCTCGAAAGATCGGCGCAAGC
GCAAGGCGAGCAATGAATGCTGCTCGGCATTTCCACTGCAAATAGTGTTG
GGCACTCTCCAGTTGCTCCTGGCCATATCGCTGGTGGCCCTGGGATCACT
TCTGATCGTCCGAGAGGCAGCGCTCTCACTGGCGGGATGCGGCATCTGGA
CGGGATTGATAGCAGCCGTTACGGGCTCCCTTGGAGTGGTGAGCATGCGC
AAAACCCAGACAGCGTTTTTGGCCCTCAGTTTGGTCTGCATCGCCAGCAG
CACCCTGGCTCTGGCTATTTCCGGCGTGGGATTGTCAAGGGACCTCAACA
GGATGGCGGAGCAAAAGGGTGAACAGTTCGACTTGATCGATACCAACAGC
GAGGTTTCCGCTGCCTGCGGCCTAATTTTTGCCCTGTTTCTTCATTTTGT
GGTCAGTATTGTATCCGTCTATCGTTGCGCCCTTCAGATTTGCACTAAGT
CGGAACATAGTGAGCTTCGCGACGTGATTATCAAGTCGAATGCTTCGGGA
ATCGCTCTGGACCAACAGAAGGTGGACCAGTACATCAAGGCGATGTCTCT
GAATGGCAGTGAAAAGGTGAACACCGAGAAGCTAGCGGCTATGTGGATGT
ATGCCACCCAGATGGGAAGCCTGCCGCCAACAGTCCGCAAACTGACGCCT
CCATCGCGGCAGATCATGCTCATTCCCTCCACCGCTGGCAATGGGATGGC
ACCACCACCGCCCACACGCTTGCCACCTCCGCCTCCGGGCGCCAGAGCTG
GACTTCTGCTTCCCGTGCCCCCGCTGCCGGCGCAGTACCGTGGAATGACC
CTTCCCTACATGCGACCTGGGCCCGGATCCGTGACCTACGCCCACCCGGC
TAGCCTAAGCGGGACATACCGGACTCACAAGAGCACAAAGTCAGCGGAGA
TCAATGGGCAGCGAAGACGGCGGCGGGCGGGAAAGTCTGATGCCAATCGC
CGGCAGCGCCGAAAATCGGAAGCGGATGTCCTGGACGGTGCTCCCAATTT
CCAGTATACGGGTCTAGATCGAGCCATAGCTGATAGCTTTTTGGCCAGGC
AAGAACAGTCACAGGCGGGCAGTCACGTCGACTATTCGTCGTCTGCCTCC
TCGGACTTGTACGGCGGTCAGAGGGCATCCTTCAAAACGAAGATCGTTTG
CCGGGATGTGGTGATGTGAAAGCTTTCTAGACCAT

BS08910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RA 1803 CG17600-PA 1..1803 17..1819 9015 100 Plus
CG17600-RD 1812 CG17600-PD 1..1812 17..1819 8890 99.5 Plus
CG17600-RC 627 CG17600-PC 1..627 1193..1819 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RA 2470 CG17600-RA 452..2264 7..1819 9020 99.8 Plus
CG17600-RD 2398 CG17600-RD 371..2192 7..1819 8895 99.3 Plus
CG17600-RC 973 CG17600-RC 47..767 1099..1819 3605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22528083..22528583 7..507 2460 99.4 Plus
X 23542271 X 22541344..22541818 1345..1819 2375 100 Plus
X 23542271 X 22528739..22529212 503..976 2370 100 Plus
X 23542271 X 22540938..22541068 1215..1345 655 100 Plus
X 23542271 X 22529268..22529393 975..1100 630 100 Plus
X 23542271 X 22540760..22540879 1099..1218 600 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:33:49 has no hits.

BS08910.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:09 Download gff for BS08910.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 460..2261 17..1818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:09 Download gff for BS08910.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 462..2263 17..1818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:30 Download gff for BS08910.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 462..2263 17..1818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:30 Download gff for BS08910.complete
Subject Subject Range Query Range Percent Splice Strand
X 22540760..22540877 1099..1216 100 -> Plus
X 22540940..22541068 1217..1345 100 -> Plus
X 22528093..22528581 17..505 100 -> Plus
X 22528742..22529212 506..976 100 -> Plus
X 22529270..22529391 977..1098 100 -> Plus
X 22541345..22541817 1346..1818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:09 Download gff for BS08910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21929929..21930417 17..505 100 -> Plus
arm_X 21930578..21931048 506..976 100 -> Plus
arm_X 21931106..21931227 977..1098 100 -> Plus
arm_X 21942596..21942713 1099..1216 100 -> Plus
arm_X 21942776..21942904 1217..1345 100 -> Plus
arm_X 21943181..21943653 1346..1818 100   Plus

BS08910.pep Sequence

Translation from 16 to 1818

> BS08910.pep
MTETSNQQPGGEDFNGRHSASPARTIDSHDSTTGSMDTIVDRSLNPEELH
QVVTTIEHSTNTTNLAGSGGSLTNSQIGMLQRDENRKQQEDQEQARQDAQ
SHIYSSPVYDEKPPAVKLLSAALDLDAQKSQANNDDDNKPNLISHQEFKQ
QLQEAIASRQPNQVNGTKSGATTLDSRISRKQRCPPEFIKYKEGSEGGGS
GSSLSSKDRRKRKASNECCSAFPLQIVLGTLQLLLAISLVALGSLLIVRE
AALSLAGCGIWTGLIAAVTGSLGVVSMRKTQTAFLALSLVCIASSTLALA
ISGVGLSRDLNRMAEQKGEQFDLIDTNSEVSAACGLIFALFLHFVVSIVS
VYRCALQICTKSEHSELRDVIIKSNASGIALDQQKVDQYIKAMSLNGSEK
VNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGNGMAPPPPT
RLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYAHPASLSGT
YRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGAPNFQYTGL
DRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTKIVCRDVVM
*

BS08910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 600 CG17600-PA 1..600 1..600 3044 100 Plus
CG17600-PD 603 CG17600-PD 1..603 1..600 3030 99.5 Plus
CG17600-PC 208 CG17600-PC 1..208 393..600 1083 100 Plus
CG17600-PB 208 CG17600-PB 1..208 393..600 1083 100 Plus