Clone Sequence Records
BS08910.3prime Sequence
902 bp (801 high quality bases) assembled on 2006-01-18
> BS08910.3prime
ATGGTCTAGAAAGCTTTCACATCACCACATCCCGGCAAACGATCTTCGTT
TTGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGA
ATAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGC
TATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCG
TCCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGA
CTTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTG
TGCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAG
GTCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTA
CTGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCG
GAGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCA
GCGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCG
GACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCG
CTAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATCGCCTTG
ATGTACTGGTCCACCTTCTGTTGGTCCAGAGCGATTCCCGAAGCATTCGA
CTTGATAATCACGTCGCGAAGCTCACTATGTTCCGACTTAGTGCAAATCT
GAAGGGCGCAACGATAGACGGATACAATACTGACCACAAAATGAAGAAAC
AGGGNCAAAATTAGGCCGCAGGCAGCGGAAACCTCGCTGTTGGTATCGAT
CAAGTCGAACTGTTCACCCTTTTGCTCCGCCATCCTGTTGAGGTCCCTTG
AC
BS08910.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 918..1803 | 902..17 | 4386 | 99.7 | Minus |
CG17600-PB | 627 | CG17600-RB | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RA | 2470 | CG17600-RA | 1379..2264 | 902..17 | 4404 | 99.8 | Minus |
CG17600-RD | 2398 | CG17600-RD | 1298..2192 | 902..17 | 4304 | 98.8 | Minus |
CG17600-RC | 973 | CG17600-RC | 47..767 | 737..17 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541818 | 491..17 | 2375 | 100 | Minus |
X | 23542271 | X | 22540938..22541068 | 621..491 | 655 | 100 | Minus |
X | 23542271 | X | 22529268..22529393 | 861..736 | 604 | 98.4 | Minus |
X | 23542271 | X | 22540760..22540879 | 737..618 | 600 | 100 | Minus |
X | 23542271 | X | 22529170..22529212 | 902..860 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:13:14 has no hits.
BS08910.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:31 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PA | 918..1803 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:45 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PA | 918..1803 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:23 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1379..2264 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:53 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1379..2264 | 17..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:53 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22529170..22529212 | 860..902 | 100 | -> | Minus |
X | 22529270..22529391 | 738..859 | 98 | -> | Minus |
X | 22540760..22540877 | 620..737 | 100 | -> | Minus |
X | 22540940..22541068 | 491..619 | 100 | -> | Minus |
X | 22541345..22541818 | 17..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:23 Download gff for
BS08910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21931006..21931048 | 860..902 | 100 | -> | Minus |
arm_X | 21931106..21931227 | 738..859 | 98 | -> | Minus |
arm_X | 21942596..21942713 | 620..737 | 100 | -> | Minus |
arm_X | 21942776..21942904 | 491..619 | 100 | -> | Minus |
arm_X | 21943181..21943654 | 17..490 | 100 | | Minus |
BS08910.5prime Sequence
930 bp (831 high quality bases) assembled on 2006-01-18
> BS08910.5prime
GAAGTTATCAGTCGACATGACAGAGACCAGTAATCAGCAGCCTGGCGGCG
AAGATTTCAATGGCCGCCACTCGGCATCGCCGGCCCGCACCATTGATTCG
CATGATTCCACCACCGGCAGCATGGATACCATTGTGGATCGCAGCCTGAA
TCCTGAGGAACTCCATCAGGTGGTGACCACCATCGAACATAGCACGAATA
CCACGAACTTGGCGGGATCGGGCGGTAGTCTGACCAACTCGCAAATCGGC
ATGCTTCAACGGGATGAGAATCGAAAACAGCAGGAGGACCAGGAGCAGGC
GCGCCAGGATGCCCAAAGTCACATCTATTCGAGTCCTGTCTACGATGAGA
AGCCGCCGGCGGTGAAACTCCTATCCGCCGCCCTAGACTTGGATGCCCAA
AAATCCCAGGCAAACAATGATGACGATAATAAGCCCAATCTTATTTCGCA
CCAAGAGTTCAAACAACAGCTGCAGGAAGCTATTGCTTCGCGGCAACCAA
ACCAGGTGAATGGCACTAAGAGTGGGGCCACCACTTTGGACTCCAGGATC
AGTCGTAAACAGCGCTGTCCACCGGAATTTATTAAGTACAAGGAGGGCAG
CGAGGGTGGAGGCAGTGGCTCATCGCTTTCCTCGAAAGATCGGCGCAAGC
GCAAGGCGAGCAATGAATGCTGCTCGGCATTTCCACTGCAAATAGTGTTG
GGCACTCTCCAGTTGCTCCTGGCCATATCGCTGGTGGCCCTGGGATCACT
TCTGATCGTCCGAGAGGCAGCGCTCTCACTGGCGGGATGCGGCATCTGGA
CGGGATTGATAGCAGCCGTTACGGGCTCCCTTGGAGTGGTGAGCATGCGC
AAAACCCAGACAGCGTTTTTGGCCCTCAGTTTGGTCTGCATCGCCAGCAG
CACCCTGGCTCTGGCTATTTCCGGCGTGGG
BS08910.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RD | 2398 | CG17600-RD | 371..1294 | 7..930 | 4575 | 99.7 | Plus |
CG17600-RA | 2470 | CG17600-RA | 452..1375 | 7..930 | 4575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22528083..22528583 | 7..507 | 2460 | 99.4 | Plus |
X | 23542271 | X | 22528739..22529166 | 503..930 | 2140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:30:59 has no hits.
BS08910.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:32 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:57:46 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:35 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 452..1375 | 7..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:52 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 452..1375 | 7..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:52 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22528083..22528581 | 7..505 | 99 | -> | Plus |
X | 22528742..22529166 | 506..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:35 Download gff for
BS08910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21929919..21930417 | 7..505 | 99 | -> | Plus |
arm_X | 21930578..21931002 | 506..930 | 100 | | Plus |
BS08910.complete Sequence
1835 bp assembled on 2009-08-24
GenBank Submission: KX800999
> BS08910.complete
GAAGTTATCAGTCGACATGACAGAGACCAGTAATCAGCAGCCTGGCGGCG
AAGATTTCAATGGCCGCCACTCGGCATCGCCGGCCCGCACCATTGATTCG
CATGATTCCACCACCGGCAGCATGGATACCATTGTGGATCGCAGCCTGAA
TCCTGAGGAACTCCATCAGGTGGTGACCACCATCGAACATAGCACGAATA
CCACGAACTTGGCGGGATCGGGCGGTAGTCTGACCAACTCGCAAATCGGC
ATGCTTCAACGGGATGAGAATCGAAAACAGCAGGAGGACCAGGAGCAGGC
GCGCCAGGATGCCCAAAGTCACATCTATTCGAGTCCTGTCTACGATGAGA
AGCCGCCGGCGGTGAAACTCCTATCCGCCGCCCTAGACTTGGATGCCCAA
AAATCCCAGGCAAACAATGATGACGATAATAAGCCCAATCTTATTTCGCA
CCAAGAGTTCAAACAACAGCTGCAGGAAGCTATTGCTTCGCGGCAACCAA
ACCAGGTGAATGGCACTAAGAGTGGGGCCACCACTTTGGACTCCAGGATC
AGTCGTAAACAGCGCTGTCCACCGGAATTTATTAAGTACAAGGAGGGCAG
CGAGGGTGGAGGCAGTGGCTCATCGCTTTCCTCGAAAGATCGGCGCAAGC
GCAAGGCGAGCAATGAATGCTGCTCGGCATTTCCACTGCAAATAGTGTTG
GGCACTCTCCAGTTGCTCCTGGCCATATCGCTGGTGGCCCTGGGATCACT
TCTGATCGTCCGAGAGGCAGCGCTCTCACTGGCGGGATGCGGCATCTGGA
CGGGATTGATAGCAGCCGTTACGGGCTCCCTTGGAGTGGTGAGCATGCGC
AAAACCCAGACAGCGTTTTTGGCCCTCAGTTTGGTCTGCATCGCCAGCAG
CACCCTGGCTCTGGCTATTTCCGGCGTGGGATTGTCAAGGGACCTCAACA
GGATGGCGGAGCAAAAGGGTGAACAGTTCGACTTGATCGATACCAACAGC
GAGGTTTCCGCTGCCTGCGGCCTAATTTTTGCCCTGTTTCTTCATTTTGT
GGTCAGTATTGTATCCGTCTATCGTTGCGCCCTTCAGATTTGCACTAAGT
CGGAACATAGTGAGCTTCGCGACGTGATTATCAAGTCGAATGCTTCGGGA
ATCGCTCTGGACCAACAGAAGGTGGACCAGTACATCAAGGCGATGTCTCT
GAATGGCAGTGAAAAGGTGAACACCGAGAAGCTAGCGGCTATGTGGATGT
ATGCCACCCAGATGGGAAGCCTGCCGCCAACAGTCCGCAAACTGACGCCT
CCATCGCGGCAGATCATGCTCATTCCCTCCACCGCTGGCAATGGGATGGC
ACCACCACCGCCCACACGCTTGCCACCTCCGCCTCCGGGCGCCAGAGCTG
GACTTCTGCTTCCCGTGCCCCCGCTGCCGGCGCAGTACCGTGGAATGACC
CTTCCCTACATGCGACCTGGGCCCGGATCCGTGACCTACGCCCACCCGGC
TAGCCTAAGCGGGACATACCGGACTCACAAGAGCACAAAGTCAGCGGAGA
TCAATGGGCAGCGAAGACGGCGGCGGGCGGGAAAGTCTGATGCCAATCGC
CGGCAGCGCCGAAAATCGGAAGCGGATGTCCTGGACGGTGCTCCCAATTT
CCAGTATACGGGTCTAGATCGAGCCATAGCTGATAGCTTTTTGGCCAGGC
AAGAACAGTCACAGGCGGGCAGTCACGTCGACTATTCGTCGTCTGCCTCC
TCGGACTTGTACGGCGGTCAGAGGGCATCCTTCAAAACGAAGATCGTTTG
CCGGGATGTGGTGATGTGAAAGCTTTCTAGACCAT
BS08910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RA | 1803 | CG17600-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
CG17600-RD | 1812 | CG17600-PD | 1..1812 | 17..1819 | 8890 | 99.5 | Plus |
CG17600-RC | 627 | CG17600-PC | 1..627 | 1193..1819 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RA | 2470 | CG17600-RA | 452..2264 | 7..1819 | 9020 | 99.8 | Plus |
CG17600-RD | 2398 | CG17600-RD | 371..2192 | 7..1819 | 8895 | 99.3 | Plus |
CG17600-RC | 973 | CG17600-RC | 47..767 | 1099..1819 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22528083..22528583 | 7..507 | 2460 | 99.4 | Plus |
X | 23542271 | X | 22541344..22541818 | 1345..1819 | 2375 | 100 | Plus |
X | 23542271 | X | 22528739..22529212 | 503..976 | 2370 | 100 | Plus |
X | 23542271 | X | 22540938..22541068 | 1215..1345 | 655 | 100 | Plus |
X | 23542271 | X | 22529268..22529393 | 975..1100 | 630 | 100 | Plus |
X | 23542271 | X | 22540760..22540879 | 1099..1218 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:33:49 has no hits.
BS08910.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:09 Download gff for
BS08910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 460..2261 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:09 Download gff for
BS08910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 462..2263 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:30 Download gff for
BS08910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 462..2263 | 17..1818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:30 Download gff for
BS08910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540760..22540877 | 1099..1216 | 100 | -> | Plus |
X | 22540940..22541068 | 1217..1345 | 100 | -> | Plus |
X | 22528093..22528581 | 17..505 | 100 | -> | Plus |
X | 22528742..22529212 | 506..976 | 100 | -> | Plus |
X | 22529270..22529391 | 977..1098 | 100 | -> | Plus |
X | 22541345..22541817 | 1346..1818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:09 Download gff for
BS08910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21929929..21930417 | 17..505 | 100 | -> | Plus |
arm_X | 21930578..21931048 | 506..976 | 100 | -> | Plus |
arm_X | 21931106..21931227 | 977..1098 | 100 | -> | Plus |
arm_X | 21942596..21942713 | 1099..1216 | 100 | -> | Plus |
arm_X | 21942776..21942904 | 1217..1345 | 100 | -> | Plus |
arm_X | 21943181..21943653 | 1346..1818 | 100 | | Plus |
BS08910.pep Sequence
Translation from 16 to 1818
> BS08910.pep
MTETSNQQPGGEDFNGRHSASPARTIDSHDSTTGSMDTIVDRSLNPEELH
QVVTTIEHSTNTTNLAGSGGSLTNSQIGMLQRDENRKQQEDQEQARQDAQ
SHIYSSPVYDEKPPAVKLLSAALDLDAQKSQANNDDDNKPNLISHQEFKQ
QLQEAIASRQPNQVNGTKSGATTLDSRISRKQRCPPEFIKYKEGSEGGGS
GSSLSSKDRRKRKASNECCSAFPLQIVLGTLQLLLAISLVALGSLLIVRE
AALSLAGCGIWTGLIAAVTGSLGVVSMRKTQTAFLALSLVCIASSTLALA
ISGVGLSRDLNRMAEQKGEQFDLIDTNSEVSAACGLIFALFLHFVVSIVS
VYRCALQICTKSEHSELRDVIIKSNASGIALDQQKVDQYIKAMSLNGSEK
VNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGNGMAPPPPT
RLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYAHPASLSGT
YRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGAPNFQYTGL
DRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTKIVCRDVVM
*
BS08910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 600 | CG17600-PA | 1..600 | 1..600 | 3044 | 100 | Plus |
CG17600-PD | 603 | CG17600-PD | 1..603 | 1..600 | 3030 | 99.5 | Plus |
CG17600-PC | 208 | CG17600-PC | 1..208 | 393..600 | 1083 | 100 | Plus |
CG17600-PB | 208 | CG17600-PB | 1..208 | 393..600 | 1083 | 100 | Plus |