Clone BS08915 Report

Search the DGRC for BS08915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptKLHL18-RA
Protein status:BS08915.pep: full length peptide match
Sequenced Size:1760

Clone Sequence Records

BS08915.complete Sequence

1760 bp assembled on 2009-12-07

GenBank Submission: KX805632

> BS08915.complete
GAAGTTATCAGTCGACATGGATTTGAGTGATAATAGCCAAGTGGAGGATC
AATACTTTGTTTACAAGCATGATAAGCTATTCGGCGAGAGTTTCCCCCTG
TTCAAGGAAATCCGCAGGATGGGCAAGCTGTGCGATGTCACCCTAAAGGT
TGAAGATCAGACCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCC
CGTATTTCTATGCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAG
GAGATCACCATGAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCT
GATCAACTATGTTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGC
AGAACCTGATGGTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGAT
GCCTGTGCCAGTTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGG
AATCCGCACCTTCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTG
CCGACAAGTATATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAG
TTTCTCGCCCTGGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGA
ACTCAACGTACGCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGG
TCAAGTACGCAGAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCT
GCAGTGCGTTTGCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGC
CCGCGAGGAACTCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACG
AGGCCAAGGACTTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGC
TTTCGCACGCGCCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGC
CGTGGGAGGACTGGCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTT
ACGATCCGCTCACCAAAAAATGGAAAATGGGCGAACAAATGTCCATGATG
AGATCTCGCGTGGGTGTGGCCGTTCTGAATGGCAAGCTGTACGCCTTTGG
TGGATTCAATGGCACCGAACGTCTGTCCACCGTTGAGGTCTACGACCCGC
GCAAAAACAAGTGGTCCCAGGGCTGTGCCATGCTCTGCAAACGCAGCGCC
GTGGGCGTGGCCGCATTGGATGATTGTATCTATGTGTGCGGCGGCTACGA
CGGCGTCACGTCGCTCAACACCGTTGAAGTTTACTATCCAAAGTCTAACA
CTTGGAAGACTGTTGCTCAAATGATGAAATATCGTTCGGCTGGTGGAGTT
ACCCAATTGAACGGCTACGTCTACGCCCTTGGCGGTCATGATGGGTTGTC
CATATTCGATTCGGTGGAGCGGTACGACCAGGCCGAAGATGTCTGGGTTA
AGATGTCGCCCATGCTGAATCGTCGCTGTAGACTGGGCGTGGCCACGCTG
AACGGAAAGATATACGTGTGCGGCGGCTACTGCGGCAACTCATTCCTTCG
ATCCGTAGAGTGCTACGACCCTCAGACGGACACCTGGAAGCTGGTGACAC
CAATGAATTGCAAACGCTCGCGGGTGGCTCTGGCCGCCAACATGGGCAAA
CTGTGGGCCATCGGCGGCTATGATGGCGAGTCAAATTTGTCTACAGTCGA
GGTGTACGATCCGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCG
CACACAGTGGTGGTGTCGGAGCCGGGGTCATACGGATCGAGTAAAAGCTT
TCTAGACCAT

BS08915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RC 1728 CG3571-PC 1..1728 17..1744 8640 100 Plus
KLHL18-RA 1728 CG3571-PA 1..1728 17..1744 8640 100 Plus
KLHL18-RB 1617 CG3571-PB 20..1617 147..1744 7990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RC 2292 CG3571-RC 62..1789 17..1744 8640 100 Plus
KLHL18-RA 2101 CG3571-RA 62..1789 17..1744 8640 100 Plus
KLHL18-RB 2199 CG3571-RB 290..1887 147..1744 7990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12009290..12010145 1002..147 4280 100 Minus
3R 32079331 3R 12008413..12008895 1744..1262 2415 100 Minus
3R 32079331 3R 12008967..12009229 1263..1001 1315 100 Minus
3R 32079331 3R 12010238..12010373 152..17 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:04:51 has no hits.

BS08915.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:21 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
CG3571-RA 58..1783 17..1742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:23 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 62..1787 17..1742 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:55 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
CG3571-RA 58..1783 17..1742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:33 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 62..1787 17..1742 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:33 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12008415..12008895 1262..1742 100 <- Minus
3R 12008969..12009227 1003..1261 100 <- Minus
3R 12009290..12010143 149..1002 100 <- Minus
3R 12010242..12010373 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:23 Download gff for BS08915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7834691..7834949 1003..1261 100 <- Minus
arm_3R 7834137..7834617 1262..1742 100 <- Minus
arm_3R 7835012..7835865 149..1002 100 <- Minus
arm_3R 7835964..7836095 17..148 100   Minus

BS08915.3prime Sequence

876 bp (793 high quality bases) assembled on 2006-01-18

> BS08915.3prime
ATGGTCTAGAAAGCTTTTACTCGATCCGTATGACCCCGGCTCCGACACCA
CCACTGTGTGCGCACATGGGCGGCATAAAGGTCCATTTGTCGGTCTCCGG
ATCGTACACCTCGACTGTAGACAAATTTGACTCGCCATCATAGCCGCCGA
TGGCCCACAGTTTGCCCATGTTGGCGGCCAGAGCCACCCGCGAGCGTTTG
CAATTCATTGGTGTCACCAGCTTCCAGGTGTCCGTCTGAGGGTCGTAGCA
CTCTACGGATCGAAGGAATGAGTTGCCGCAGTAGCCGCCGCACACGTATA
TCTTTCCGTTCAGCGTGGCCACGCCCAGTCTACAGCGACGATTCAGCATG
GGCGACATCTTAACCCAGACATCTTCGGCCTGGTCGTACCGCTCCACCGA
ATCGAATATGGACAACCCATCATGACCGCCAAGGGCGTAGACGTAGCCGT
TCAATTGGGTAACTCCACCAGCCGAACGATATTTCATCATTTGAGCAACA
GTCTTCCAAGTGTTAGACTTTGGATAGTAAACTTCAACGGTGTTGAGCGA
CGTGACGCCGTCGTAGCCGCCGCACACATAGATACAATCATCCAATGCGG
CCACGCCCACGGCGCTGCGTTTGCAGAGCATGGCACAGCCCTGGGACCAC
TTGTTTTTGCGCGGGTCGTAGACCTCAACGGTGGACAGACGTTCGGTGCC
ATTGAATCCACCAAAGGCGTACAGCTTGCCATTCAGAACGGCCACACCCA
CGCGAGATCTCATCATGGACATTTGTTCGCCCATTTTCCATTTTTTGGTG
AGCGGATCGTAAATCTCGACCGTGCTCACAGATTCCCCAGTGCTGGCCAG
TCCTCCCACGGCGTATATTTGTCCGG

BS08915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3571-PA 1728 CG3571-RA 869..1728 876..17 4300 100 Minus
CG3571-PB 1617 CG3571-RB 758..1617 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RC 2292 CG3571-RC 930..1789 876..17 4300 100 Minus
KLHL18-RB 2199 CG3571-RB 1028..1887 876..17 4300 100 Minus
KLHL18-RA 2101 CG3571-RA 930..1789 876..17 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12008413..12008895 17..499 2415 100 Plus
3R 32079331 3R 12008967..12009229 498..760 1315 100 Plus
3R 32079331 3R 12009290..12009407 759..876 590 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:03:08 has no hits.

BS08915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:42 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PB 758..1617 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:01 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PB 758..1617 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:28 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 930..1789 17..876 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:11 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 930..1789 17..876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:11 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12008413..12008895 17..499 100 <- Plus
3R 12008969..12009227 500..758 100 <- Plus
3R 12009290..12009407 759..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:28 Download gff for BS08915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7834135..7834617 17..499 100 <- Plus
arm_3R 7834691..7834949 500..758 100 <- Plus
arm_3R 7835012..7835129 759..876 100   Plus

BS08915.5prime Sequence

849 bp (797 high quality bases) assembled on 2006-01-18

> BS08915.5prime
GAAGTTATCAGTCGACATGGATTTGAGTGATAATAGCCAAGTGGAGGATC
AATACTTTGTTTACAAGCATGATAAGCTATTCGGCGAGAGTTTCCCCCTG
TTCAAGGAAATCCGCAGGATGGGCAAGCTGTGCGATGTCACCCTAAAGGT
TGAAGATCAGACCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCC
CGTATTTCTATGCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAG
GAGATCACCATGAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCT
GATCAACTATGTTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGC
AGAACCTGATGGTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGAT
GCCTGTGCCAGTTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGG
AATCCGCACCTTCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTG
CCGACAAGTATATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAG
TTTCTCGCCCTGGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGA
ACTCAACGTACGCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGG
TCAAGTACGCAGAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCT
GCAGTGCGTTTGCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGC
CCGCGAGGAACTCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACG
AGGCCAAGGACTTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAG

BS08915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3571-PA 1728 CG3571-RA 1..833 17..849 4165 100 Plus
CG3571-PB 1617 CG3571-RB 20..722 147..849 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-RC 2292 CG3571-RC 62..894 17..849 4165 100 Plus
KLHL18-RA 2101 CG3571-RA 62..894 17..849 4165 100 Plus
KLHL18-RB 2199 CG3571-RB 290..992 147..849 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12009443..12010145 849..147 3515 100 Minus
3R 32079331 3R 12010238..12010373 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:55:49 has no hits.

BS08915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:44 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:02 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3571-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:02 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 53..894 4..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:01 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
KLHL18-RA 53..894 4..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:01 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12009443..12010143 149..849 100 <- Minus
3R 12010242..12010382 4..148 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:02 Download gff for BS08915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7835165..7835865 149..849 100 <- Minus
arm_3R 7835964..7836104 4..148 96   Minus

BS08915.pep Sequence

Translation from 16 to 1743

> BS08915.pep
MDLSDNSQVEDQYFVYKHDKLFGESFPLFKEIRRMGKLCDVTLKVEDQTF
SAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAIEPSALESLINYVY
SGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISRFHPHNVLGIRTFA
DSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQLLELMRRDELNVRT
EEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSPQFLADRVAREELI
RSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGEFFTGQIYAVGGLA
STGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVLNGKLYAFGGFNGT
ERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDCIYVCGGYDGVTSL
NTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSV
ERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGGYCGNSFLRSVECY
DPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDGESNLSTVEVYDPE
TDKWTFMPPMCAHSGGVGAGVIRIE*

BS08915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
KLHL18-PC 575 CG3571-PC 1..575 1..575 3013 100 Plus
KLHL18-PA 575 CG3571-PA 1..575 1..575 3013 100 Plus
KLHL18-PB 538 CG3571-PB 6..538 43..575 2785 99.8 Plus
dbo-PB 620 CG6224-PB 65..604 32..573 1173 45.9 Plus
dbo-PA 623 CG6224-PA 65..604 32..573 1173 45.9 Plus