Clone Sequence Records
BS08915.complete Sequence
1760 bp assembled on 2009-12-07
GenBank Submission: KX805632
> BS08915.complete
GAAGTTATCAGTCGACATGGATTTGAGTGATAATAGCCAAGTGGAGGATC
AATACTTTGTTTACAAGCATGATAAGCTATTCGGCGAGAGTTTCCCCCTG
TTCAAGGAAATCCGCAGGATGGGCAAGCTGTGCGATGTCACCCTAAAGGT
TGAAGATCAGACCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCC
CGTATTTCTATGCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAG
GAGATCACCATGAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCT
GATCAACTATGTTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGC
AGAACCTGATGGTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGAT
GCCTGTGCCAGTTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGG
AATCCGCACCTTCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTG
CCGACAAGTATATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAG
TTTCTCGCCCTGGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGA
ACTCAACGTACGCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGG
TCAAGTACGCAGAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCT
GCAGTGCGTTTGCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGC
CCGCGAGGAACTCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACG
AGGCCAAGGACTTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGC
TTTCGCACGCGCCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGC
CGTGGGAGGACTGGCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTT
ACGATCCGCTCACCAAAAAATGGAAAATGGGCGAACAAATGTCCATGATG
AGATCTCGCGTGGGTGTGGCCGTTCTGAATGGCAAGCTGTACGCCTTTGG
TGGATTCAATGGCACCGAACGTCTGTCCACCGTTGAGGTCTACGACCCGC
GCAAAAACAAGTGGTCCCAGGGCTGTGCCATGCTCTGCAAACGCAGCGCC
GTGGGCGTGGCCGCATTGGATGATTGTATCTATGTGTGCGGCGGCTACGA
CGGCGTCACGTCGCTCAACACCGTTGAAGTTTACTATCCAAAGTCTAACA
CTTGGAAGACTGTTGCTCAAATGATGAAATATCGTTCGGCTGGTGGAGTT
ACCCAATTGAACGGCTACGTCTACGCCCTTGGCGGTCATGATGGGTTGTC
CATATTCGATTCGGTGGAGCGGTACGACCAGGCCGAAGATGTCTGGGTTA
AGATGTCGCCCATGCTGAATCGTCGCTGTAGACTGGGCGTGGCCACGCTG
AACGGAAAGATATACGTGTGCGGCGGCTACTGCGGCAACTCATTCCTTCG
ATCCGTAGAGTGCTACGACCCTCAGACGGACACCTGGAAGCTGGTGACAC
CAATGAATTGCAAACGCTCGCGGGTGGCTCTGGCCGCCAACATGGGCAAA
CTGTGGGCCATCGGCGGCTATGATGGCGAGTCAAATTTGTCTACAGTCGA
GGTGTACGATCCGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCG
CACACAGTGGTGGTGTCGGAGCCGGGGTCATACGGATCGAGTAAAAGCTT
TCTAGACCAT
BS08915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RC | 1728 | CG3571-PC | 1..1728 | 17..1744 | 8640 | 100 | Plus |
KLHL18-RA | 1728 | CG3571-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
KLHL18-RB | 1617 | CG3571-PB | 20..1617 | 147..1744 | 7990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RC | 2292 | CG3571-RC | 62..1789 | 17..1744 | 8640 | 100 | Plus |
KLHL18-RA | 2101 | CG3571-RA | 62..1789 | 17..1744 | 8640 | 100 | Plus |
KLHL18-RB | 2199 | CG3571-RB | 290..1887 | 147..1744 | 7990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12009290..12010145 | 1002..147 | 4280 | 100 | Minus |
3R | 32079331 | 3R | 12008413..12008895 | 1744..1262 | 2415 | 100 | Minus |
3R | 32079331 | 3R | 12008967..12009229 | 1263..1001 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 12010238..12010373 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:04:51 has no hits.
BS08915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:21 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-RA | 58..1783 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:23 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 62..1787 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:55 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-RA | 58..1783 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:33 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 62..1787 | 17..1742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:33 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12008415..12008895 | 1262..1742 | 100 | <- | Minus |
3R | 12008969..12009227 | 1003..1261 | 100 | <- | Minus |
3R | 12009290..12010143 | 149..1002 | 100 | <- | Minus |
3R | 12010242..12010373 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:23 Download gff for
BS08915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7834691..7834949 | 1003..1261 | 100 | <- | Minus |
arm_3R | 7834137..7834617 | 1262..1742 | 100 | <- | Minus |
arm_3R | 7835012..7835865 | 149..1002 | 100 | <- | Minus |
arm_3R | 7835964..7836095 | 17..148 | 100 | | Minus |
BS08915.3prime Sequence
876 bp (793 high quality bases) assembled on 2006-01-18
> BS08915.3prime
ATGGTCTAGAAAGCTTTTACTCGATCCGTATGACCCCGGCTCCGACACCA
CCACTGTGTGCGCACATGGGCGGCATAAAGGTCCATTTGTCGGTCTCCGG
ATCGTACACCTCGACTGTAGACAAATTTGACTCGCCATCATAGCCGCCGA
TGGCCCACAGTTTGCCCATGTTGGCGGCCAGAGCCACCCGCGAGCGTTTG
CAATTCATTGGTGTCACCAGCTTCCAGGTGTCCGTCTGAGGGTCGTAGCA
CTCTACGGATCGAAGGAATGAGTTGCCGCAGTAGCCGCCGCACACGTATA
TCTTTCCGTTCAGCGTGGCCACGCCCAGTCTACAGCGACGATTCAGCATG
GGCGACATCTTAACCCAGACATCTTCGGCCTGGTCGTACCGCTCCACCGA
ATCGAATATGGACAACCCATCATGACCGCCAAGGGCGTAGACGTAGCCGT
TCAATTGGGTAACTCCACCAGCCGAACGATATTTCATCATTTGAGCAACA
GTCTTCCAAGTGTTAGACTTTGGATAGTAAACTTCAACGGTGTTGAGCGA
CGTGACGCCGTCGTAGCCGCCGCACACATAGATACAATCATCCAATGCGG
CCACGCCCACGGCGCTGCGTTTGCAGAGCATGGCACAGCCCTGGGACCAC
TTGTTTTTGCGCGGGTCGTAGACCTCAACGGTGGACAGACGTTCGGTGCC
ATTGAATCCACCAAAGGCGTACAGCTTGCCATTCAGAACGGCCACACCCA
CGCGAGATCTCATCATGGACATTTGTTCGCCCATTTTCCATTTTTTGGTG
AGCGGATCGTAAATCTCGACCGTGCTCACAGATTCCCCAGTGCTGGCCAG
TCCTCCCACGGCGTATATTTGTCCGG
BS08915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3571-PA | 1728 | CG3571-RA | 869..1728 | 876..17 | 4300 | 100 | Minus |
CG3571-PB | 1617 | CG3571-RB | 758..1617 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RC | 2292 | CG3571-RC | 930..1789 | 876..17 | 4300 | 100 | Minus |
KLHL18-RB | 2199 | CG3571-RB | 1028..1887 | 876..17 | 4300 | 100 | Minus |
KLHL18-RA | 2101 | CG3571-RA | 930..1789 | 876..17 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12008413..12008895 | 17..499 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 12008967..12009229 | 498..760 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 12009290..12009407 | 759..876 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:08 has no hits.
BS08915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:42 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PB | 758..1617 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:01 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PB | 758..1617 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:28 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 930..1789 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:11 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 930..1789 | 17..876 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:11 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12008413..12008895 | 17..499 | 100 | <- | Plus |
3R | 12008969..12009227 | 500..758 | 100 | <- | Plus |
3R | 12009290..12009407 | 759..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:28 Download gff for
BS08915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7834135..7834617 | 17..499 | 100 | <- | Plus |
arm_3R | 7834691..7834949 | 500..758 | 100 | <- | Plus |
arm_3R | 7835012..7835129 | 759..876 | 100 | | Plus |
BS08915.5prime Sequence
849 bp (797 high quality bases) assembled on 2006-01-18
> BS08915.5prime
GAAGTTATCAGTCGACATGGATTTGAGTGATAATAGCCAAGTGGAGGATC
AATACTTTGTTTACAAGCATGATAAGCTATTCGGCGAGAGTTTCCCCCTG
TTCAAGGAAATCCGCAGGATGGGCAAGCTGTGCGATGTCACCCTAAAGGT
TGAAGATCAGACCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCC
CGTATTTCTATGCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAG
GAGATCACCATGAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCT
GATCAACTATGTTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGC
AGAACCTGATGGTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGAT
GCCTGTGCCAGTTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGG
AATCCGCACCTTCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTG
CCGACAAGTATATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAG
TTTCTCGCCCTGGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGA
ACTCAACGTACGCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGG
TCAAGTACGCAGAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCT
GCAGTGCGTTTGCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGC
CCGCGAGGAACTCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACG
AGGCCAAGGACTTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAG
BS08915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3571-PA | 1728 | CG3571-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
CG3571-PB | 1617 | CG3571-RB | 20..722 | 147..849 | 3515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-RC | 2292 | CG3571-RC | 62..894 | 17..849 | 4165 | 100 | Plus |
KLHL18-RA | 2101 | CG3571-RA | 62..894 | 17..849 | 4165 | 100 | Plus |
KLHL18-RB | 2199 | CG3571-RB | 290..992 | 147..849 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12009443..12010145 | 849..147 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 12010238..12010373 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:55:49 has no hits.
BS08915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:44 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:02 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3571-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:02 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 53..894 | 4..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:01 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KLHL18-RA | 53..894 | 4..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:01 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12009443..12010143 | 149..849 | 100 | <- | Minus |
3R | 12010242..12010382 | 4..148 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:02 Download gff for
BS08915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7835165..7835865 | 149..849 | 100 | <- | Minus |
arm_3R | 7835964..7836104 | 4..148 | 96 | | Minus |
BS08915.pep Sequence
Translation from 16 to 1743
> BS08915.pep
MDLSDNSQVEDQYFVYKHDKLFGESFPLFKEIRRMGKLCDVTLKVEDQTF
SAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAIEPSALESLINYVY
SGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISRFHPHNVLGIRTFA
DSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQLLELMRRDELNVRT
EEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSPQFLADRVAREELI
RSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGEFFTGQIYAVGGLA
STGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVLNGKLYAFGGFNGT
ERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDCIYVCGGYDGVTSL
NTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSV
ERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGGYCGNSFLRSVECY
DPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDGESNLSTVEVYDPE
TDKWTFMPPMCAHSGGVGAGVIRIE*
BS08915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KLHL18-PC | 575 | CG3571-PC | 1..575 | 1..575 | 3013 | 100 | Plus |
KLHL18-PA | 575 | CG3571-PA | 1..575 | 1..575 | 3013 | 100 | Plus |
KLHL18-PB | 538 | CG3571-PB | 6..538 | 43..575 | 2785 | 99.8 | Plus |
dbo-PB | 620 | CG6224-PB | 65..604 | 32..573 | 1173 | 45.9 | Plus |
dbo-PA | 623 | CG6224-PA | 65..604 | 32..573 | 1173 | 45.9 | Plus |