Clone BS08921 Report

Search the DGRC for BS08921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptdock-RB
Protein status:BS08921.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08921.3prime Sequence

934 bp (867 high quality bases) assembled on 2006-01-18

> BS08921.3prime
ATGGTCTAGAAAGCTTTTACGTGCCATTGGCCTTCGGCAGCGATCGCACC
AGATACAGCTTTTCGCCCTGCTTATTCGTGTAGATGGGCGCTCTTTGGTA
GTGATCGACCAGTTGGTCCAGCGAGTGGAACTTCCTCTGCCCAATGCAGT
ACATGTTCTGCTCCACGTGCACGCGGAAGTGCTTGTTGCGCCCTGGGGCC
TTTAACGAAACCGAATAGTCTCCCATGTTAGTCTCACTGTCTCTGATGAG
GAAGTCGCCATCGTGCCCGTGGCCGTTGAGCACCGTGTCGCACTGGCTGC
GGGTGATGGCTCCATAATACCACGACTTGCCCGCCAGATTTGGCCGCTCG
ATTGGCTGGCCGGAAGATTGCGCCGCCGGCTTATTACCCTCATTGCGCCG
CTCCATGGAGTCGTTTCCTCCGCCACCACCTGCGCCGCCATTACTTCCTC
CTCCATTTCCGTTTCCTGCACTGGCACTCGCATTACGATAGGGCGTGGCC
AGGTAGTCGTTCAACTCTTGGAGATAATTGCGTGGAACTAAACCGACTTG
GCCCTGATTGTTGCGAGCTTTGTACCAGTCCGGATCGGAGGCGGGCCGAT
CCACGATCTCCAAGCGATCGCCCTTCTCGAACGAGAGCTCCTGGTCGTTG
TTTGACGTGAAGCTGTACAGCGCGACCACAATATCAAGCACGTTCTCGGC
CATTGCGTAGGTGTGGATCTCGCCGTCGTTATCACAATCCTCCGTTGTGT
AGTTGCTGGGGAACCAGCCGACGGAATTGCCGCTCTGTCCACGCCACCAT
CCATCGTTGGACTTCTCCAGGATGAGGATTCGTGTGCCCTTGGTCAGCGA
AAGTTCATCGGGCTGCTGGGCCTGATAGTTATACTTGACCACAGCCGTTC
CGATGGCCTCTGCGGGATCTGGGGGAAGTCGGCG

BS08921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3727-PA 1233 dock-RA 316..1233 934..17 4590 100 Minus
CG3727-PB 1647 dock-RB 730..1647 934..17 4590 100 Minus
CG3727-PC 1647 dock-RC 730..1647 934..17 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 1500..2417 934..17 4590 100 Minus
dock-RC 3583 CG3727-RC 1348..2265 934..17 4590 100 Minus
dock-RB 3618 CG3727-RB 1383..2300 934..17 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 831176..831626 677..227 2255 100 Minus
2L 23513712 2L 830826..831085 934..675 1300 100 Minus
2L 23513712 2L 831714..831923 226..17 1050 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:46:02 has no hits.

BS08921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:55 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-PB 730..1647 17..934 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:17 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3727-PC 730..1647 17..934 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:17 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 1383..2302 13..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:28 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 1383..2302 13..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:28 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 830826..831083 677..934 100 -> Minus
2L 831177..831626 227..676 100 -> Minus
2L 831714..831925 13..226 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:17 Download gff for BS08921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 830826..831083 677..934 100 -> Minus
arm_2L 831177..831626 227..676 100 -> Minus
arm_2L 831714..831925 13..226 99   Minus

BS08921.5prime Sequence

885 bp (769 high quality bases) assembled on 2006-01-18

> BS08921.5prime
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGGG

BS08921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3727-PB 1647 dock-RB 1..867 17..883 4335 100 Plus
CG3727-PC 1647 dock-RC 1..867 17..883 4335 100 Plus
CG3727-PA 1233 dock-RA 1..453 431..883 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 771..1637 17..883 4335 100 Plus
dock-RC 3583 CG3727-RC 619..1485 17..883 4335 100 Plus
dock-RB 3618 CG3727-RB 654..1520 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 829536..829972 17..453 2185 100 Plus
2L 23513712 2L 830735..830963 655..883 1145 100 Plus
2L 23513712 2L 830144..830349 452..657 1030 100 Plus
Blast to na_te.dros performed 2015-02-12 20:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 75..298 177 55.7 Plus

BS08921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:53:56 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-PB 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:19 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3727-PC 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:07 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 645..1522 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:57 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 645..1522 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:57 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 830145..830349 453..657 100 -> Plus
2L 830738..830965 658..885 99   Plus
2L 829527..829971 9..452 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:07 Download gff for BS08921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 829527..829971 9..452 99 -> Plus
arm_2L 830145..830349 453..657 100 -> Plus
arm_2L 830738..830965 658..885 99   Plus

BS08921.complete Sequence

1679 bp (1679 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636318

> BS08921.complete
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGG
CAATTCCGTCGGCTGGTTCCCCAGCAACTACACAACGGAGGATTGTGATA
ACGACGGCGAGATCCACACCTACGCAATGGCCGAGAACGTGCTTGATATT
GTGGTCGCGCTGTACAGCTTCACGTCAAACAACGACCAGGAGCTCTCGTT
CGAGAAGGGCGATCGCTTGGAGATCGTGGATCGGCCCGCCTCCGATCCGG
ACTGGTACAAAGCTCGCAACAATCAGGGCCAAGTCGGTTTAGTTCCACGC
AATTATCTCCAAGAGTTGAACGACTACCTGGCCACGCCCTATCGTAATGC
GAGTGCCAGTGCAGGAAACGGAAATGGAGGAGGAAGTAATGGCGGCGCAG
GTGGTGGCGGAGGAAACGACTCCATGGAGCGGCGCAATGAGGGTAATAAG
CCGGCGGCGCAATCTTCCGGCCAGCCAATCGAGCGGCCAAATCTGGCGGG
CAAGTCGTGGTATTATGGAGCCATCACCCGCAGCCAGTGCGACACGGTGC
TCAACGGCCACGGGCACGATGGCGACTTCCTCATCAGAGACAGTGAGACT
AACATGGGAGACTATTCGGTTTCGTTAAAGGCCCCAGGGCGCAACAAGCA
CTTCCGCGTGCACGTGGAGCAGAACATGTACTGCATTGGGCAGAGGAAGT
TCCACTCGCTGGACCAACTGGTCGATCACTACCAAAGAGCGCCCATCTAC
ACGAATAAGCAGGGCGAAAAGCTGTATCTGGTGCGATCGCTGCCGAAGGC
CAATGGCACGTAAAAGCTTTCTAGACCAT

BS08921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 1647 CG3727-PD 1..1647 17..1663 8235 100 Plus
dock-RC 1647 CG3727-PC 1..1647 17..1663 8235 100 Plus
dock-RB 1647 CG3727-PB 1..1647 17..1663 8235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 771..2417 17..1663 8235 100 Plus
dock-RC 3583 CG3727-RC 619..2265 17..1663 8235 100 Plus
dock-RB 3618 CG3727-RB 654..2300 17..1663 8235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 831176..831626 1003..1453 2255 100 Plus
2L 23513712 2L 829536..829972 17..453 2185 100 Plus
2L 23513712 2L 830735..831085 655..1005 1755 100 Plus
2L 23513712 2L 831714..831923 1454..1663 1050 100 Plus
2L 23513712 2L 830144..830349 452..657 1030 100 Plus
Blast to na_te.dros performed 2014-11-27 10:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 75..298 177 55.7 Plus

BS08921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:24 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 1..1647 17..1663 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:23 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 615..2272 9..1667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:11 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RB 659..2298 22..1661 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:24 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 615..2272 9..1667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:13 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RB 659..2298 22..1661 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:13 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 830738..831083 658..1003 100 -> Plus
2L 829541..829971 22..452 100 -> Plus
2L 830145..830349 453..657 100 -> Plus
2L 831177..831626 1004..1453 100 -> Plus
2L 831714..831921 1454..1661 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:11 Download gff for BS08921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 829541..829971 22..452 100 -> Plus
arm_2L 830145..830349 453..657 100 -> Plus
arm_2L 830738..831083 658..1003 100 -> Plus
arm_2L 831177..831626 1004..1453 100 -> Plus
arm_2L 831714..831921 1454..1661 100   Plus

BS08921.pep Sequence

Translation from 16 to 1662

> BS08921.pep
MLEHPQRFVRNIPDSSASSQQYPQQQQHPPQLPQHQNLNLNQNQNLNQNQ
IYQYRPQVPVPVPGSPAHHQRHSSLSQQQQLHHHRTLSTASSCSAQHKSV
TFGQPALDCGGNGSGSANGSGSGNSSSGSAAGNAGTQSMAGNMKHGKSQD
DVCYVVAKYDYAAQGAQELDLRKNERYLLLDDSKHWWRVQNSRNQSGYVP
SNYVKKEKPSLFDSIKKKVKKGSGSKTLPNCSPSRQVESPTMSRRLPPDP
AEAIGTAVVKYNYQAQQPDELSLTKGTRILILEKSNDGWWRGQSGNSVGW
FPSNYTTEDCDNDGEIHTYAMAENVLDIVVALYSFTSNNDQELSFEKGDR
LEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNASASAG
NGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYY
GAITRSQCDTVLNGHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHV
EQNMYCIGQRKFHSLDQLVDHYQRAPIYTNKQGEKLYLVRSLPKANGT*

BS08921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
dock-PD 548 CG3727-PD 1..548 1..548 2944 100 Plus
dock-PC 548 CG3727-PC 1..548 1..548 2944 100 Plus
dock-PB 548 CG3727-PB 1..548 1..548 2944 100 Plus
dock-PA 410 CG3727-PA 1..410 139..548 2205 100 Plus
Dap160-PH 1005 CG1099-PH 762..996 133..381 256 27.6 Plus