Clone Sequence Records
BS08937.3prime Sequence
909 bp (790 high quality bases) assembled on 2006-01-18
> BS08937.3prime
ATGGTCTAGAAAGCTTCTAATCCTTGCGGCTGGCCATGTGGTTGGACAAG
CGGTGGCGGGTCCTATTGGCCACACAGGATATATCCATGTTGGCGAGTGA
GGAAGGCCTGTTGGCCAAAGTGCGGCGACGTAAGACACGTGGAGCAGGAG
TGCTCGGCTCCGGCGAGATGGAGCCCAACAGACGCCTGCCATTCGACGGC
GCAGCGGCAGTGGGCGTAAGTTGGCGCCTCTTCGACTCATATTCATCACT
ATCATATTCATCACTATCGTCATCGCTATCCGACACGTGTCTAGGCGGCG
AGACGTATCTAGGGCGCCAGGGACGACGTCCATTCGATGTGGACGGCTCA
GTGTTTTCTTGGTTATCAAGTGTCGATGCGGATGTGGATGTGGATGTGGA
TGTGGATGATGTCGCAGTTGCAGTAGCAGAGCGAAACGAGGTTACTACAC
TTGAGAGAAATGTTGTTTGCGTTCCCTGTGATTCAAATGTGCGAGTTCCA
CGATCGGCTAAAGCGCGTGCCCCCGCAGAAGTAGATGGTTGATCATCGGA
GAGGGTCACCACGCGACTCTGCACTTTGGTATCGAACGCACGCTGAAAGA
CGGCATCATCGTCGGAGGAGCCGAAATCATCCCAATGGGAGGGTGATAGC
TTCTCTTGAATCTGATCACCATTTAGGTGACCTGGACGTGGGGCTTCGGC
CGAGTCGTCCATTGAGCCGGCGTCATCCGAGTCCGATTCGGCAACGGGCA
CTGCCTCCGGGCTGACGGCTGAGCAAACCTTGCAGACGTAGTTTTGGAGA
GTCTTCAACGTGCAAAGGTAATGTGACGGATTGGCGCCACATGAGGTGCA
GTACAGCAACATGGCGGAAGTGTCGGCGCGACCAAAGACCGCAACGCACA
ACGCGGGCG
BS08937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9576-PA | 1563 | CG9576-RA | 674..1563 | 906..17 | 4400 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 1053..1942 | 906..17 | 4420 | 99.8 | Minus |
| Phf7-RB | 2211 | CG9576-RB | 1048..1937 | 906..17 | 4420 | 99.8 | Minus |
| Phf7-RA | 2221 | CG9576-RA | 769..1658 | 906..17 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20160918..20161807 | 17..906 | 4420 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 11:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 426..371 | 108 | 67.8 | Minus |
BS08937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:22 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 671..1563 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:56 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 671..1563 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:25 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 766..1661 | 14..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:34 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 766..1661 | 14..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:34 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20160915..20161810 | 14..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:25 Download gff for
BS08937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20054948..20055843 | 14..909 | 99 | | Plus |
BS08937.5prime Sequence
933 bp (836 high quality bases) assembled on 2006-01-18
> BS08937.5prime
GAAGTTATCAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCG
AGCGGGACGAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATG
GTGCACCGCAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGA
AAAGAAATTGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGG
TCAACCGCTGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCC
AATATTTGGTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTG
CGGCGTCGATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGT
TCTGCCATCAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAAT
GACGAGGAATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCG
CTTCAGCGTGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGT
TCCACCGCAGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTC
AAGTGCCCGCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATAT
GGGCATCGCGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACG
CCTTTGCTGGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGC
GTTGCGGTCTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCAC
CTCATGTGGCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCC
AAAACTACGTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGGCAGTGCCC
GTTGCCGAATCGGACTCGGATGACGCCGGCTCAATGGACGACTCGGCCGA
AGCCCCACGTCCAGGTCACCTAAATGGTGATCA
BS08937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9576-PA | 1563 | CG9576-RA | 1..917 | 17..933 | 4585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1296 | 16..933 | 4590 | 100 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1291 | 16..933 | 4590 | 100 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..1012 | 16..933 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20161940..20162443 | 621..118 | 2520 | 100 | Minus |
| X | 23542271 | X | 20161564..20161875 | 933..622 | 1560 | 100 | Minus |
| X | 23542271 | X | 20162535..20162637 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:28:15 has no hits.
BS08937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:23 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:58:59 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:06 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1011 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:34 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1011 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:34 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20161565..20161875 | 622..932 | 100 | <- | Minus |
| X | 20161940..20162442 | 119..621 | 100 | <- | Minus |
| X | 20162535..20162641 | 9..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:06 Download gff for
BS08937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20055598..20055908 | 622..932 | 100 | <- | Minus |
| arm_X | 20055973..20056475 | 119..621 | 100 | <- | Minus |
| arm_X | 20056568..20056674 | 9..118 | 97 | | Minus |
BS08937.complete Sequence
1595 bp (1595 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636319
> BS08937.complete
GAAGTTATCAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCG
AGCGGGACGAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATG
GTGCACCGCAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGA
AAAGAAATTGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGG
TCAACCGCTGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCC
AATATTTGGTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTG
CGGCGTCGATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGT
TCTGCCATCAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAAT
GACGAGGAATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCG
CTTCAGCGTGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGT
TCCACCGCAGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTC
AAGTGCCCGCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATAT
GGGCATCGCGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACG
CCTTTGCTGGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGC
GTTGCGGTCTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCAC
CTCATGTGGCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCC
AAAACTACGTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGGCAGTGCCC
GTTGCCGAATCGGACTCGGATGACGCCGGCTCAATGGACGACTCGGCCGA
AGCCCCACGTCCAGGTCACCTAAATGGTGATCAGATTCAAGAGAAGCTAT
CACCCTCCCATTGGGATGATTTCGGCTCCTCCGACGATGATGCCGTCTTT
CAGCGTGCGTTCGATACCAAAGTGCAGAGTCGCGTGGTGACCCTCTCCGA
TGATCAACCATCTACTTCTGCGGGGGCACGCGCTTTAGCCGATCGTGGAA
CTCGCACATTTGAATCACAGGGAACGCAAACAACATTTCTCTCAAGTGTA
GTAACCTCGTTTCGCTCTGCTACTGCAACTGCGACATCATCCACATCCAC
ATCCACATCCACATCCGCATCGACACTTGATAACCAAGAAAACACTGAGC
CGTCCACATCGAATGGACGTCGTCCCTGGCGCCCTAGATACGTCTCGCCG
CCTAGACACGTGTCGGATAGCGATGACGATAGTGATGAATATGATAGTGA
TGAATATGAGTCGAAGAGGCGCCAACTTACGCCCACTGCCGCTGCGCCGT
CGAATGGCAGGCGTCTGTTGGGCTCCATCTCGCCGGAGCCGAGCACTCCT
GCTCCACGTGTCTTACGTCGCCGCACTTTGGCCAACAGGCCTTCCTCACT
CGCCAACATGGATATATCCTGTGTGGCCAATAGGACCCGCCACCGCTTGT
CCAACCACATGGCCAGCCGCAAGGATTAGAAGCTTTCTAGACCAT
BS08937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 1563 | CG9576-PC | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| Phf7-RB | 1563 | CG9576-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| Phf7-RA | 1563 | CG9576-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1942 | 16..1579 | 7820 | 100 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1937 | 16..1579 | 7820 | 100 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..1658 | 16..1579 | 7820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20160918..20161875 | 1579..622 | 4790 | 100 | Minus |
| X | 23542271 | X | 20161940..20162443 | 621..118 | 2520 | 100 | Minus |
| X | 23542271 | X | 20162535..20162637 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:42:40 has no hits.
BS08937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:25 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:24 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1660 | 9..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:26 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 96..1658 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:25 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1660 | 9..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:52 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 96..1658 | 17..1579 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:52 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20160918..20161875 | 622..1579 | 100 | <- | Minus |
| X | 20161940..20162442 | 119..621 | 100 | <- | Minus |
| X | 20162535..20162636 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:26 Download gff for
BS08937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20054951..20055908 | 622..1579 | 100 | <- | Minus |
| arm_X | 20055973..20056475 | 119..621 | 100 | <- | Minus |
| arm_X | 20056568..20056669 | 17..118 | 100 | | Minus |
BS08937.pep Sequence
Translation from 16 to 1578
> BS08937.pep
MVQICVLCLSGERDELIFGTVHVEGNMMVHRNCLYLSSNLIQRGEKKLSI
MNFLKEDIEAEVNRCRLLKCCYCRRLGANIWCCKSGCRRTFHTKCGVDNL
AQNQFCDTYNSFCHQHVLVPRNRPVFKNDEECLLCAEDVVAKGERFSVVT
CLYAPCCRNGWFHRRCLQRYANSSGYFFKCPLCNNTDVFRRVAYMGIAVL
DQDASWETEPDAFAGQYRRDVNCTAALCVAVSGRADTSAMLLYCTSCGAN
PSHYLCTLKTLQNYVCKVCSAVSPEAVPVAESDSDDAGSMDDSAEAPRPG
HLNGDQIQEKLSPSHWDDFGSSDDDAVFQRAFDTKVQSRVVTLSDDQPST
SAGARALADRGTRTFESQGTQTTFLSSVVTSFRSATATATSSTSTSTSTS
ASTLDNQENTEPSTSNGRRPWRPRYVSPPRHVSDSDDDSDEYDSDEYESK
RRQLTPTAAAPSNGRRLLGSISPEPSTPAPRVLRRRTLANRPSSLANMDI
SCVANRTRHRLSNHMASRKD*
BS08937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-PC | 520 | CG9576-PC | 1..520 | 1..520 | 2782 | 100 | Plus |
| Phf7-PB | 520 | CG9576-PB | 1..520 | 1..520 | 2782 | 100 | Plus |
| Phf7-PA | 520 | CG9576-PA | 1..520 | 1..520 | 2782 | 100 | Plus |
| pie-PB | 582 | CG5354-PB | 9..360 | 5..358 | 421 | 28.8 | Plus |
| pie-PA | 582 | CG5354-PA | 9..360 | 5..358 | 421 | 28.8 | Plus |
