Clone BS08941 Report

Search the DGRC for BS08941

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4702-RA
Protein status:BS08941.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08941.3prime Sequence

870 bp (814 high quality bases) assembled on 2006-01-18

> BS08941.3prime
ATGGTCTAGAAAGCTTCTAGACCTCGTTGCACTCCAGATAGATCTGGCGA
CAGTCGAATCCGGAGCGACCTCTACGTCCGGCGTCGTACAGCTCCTCGAA
GTTGCTGCCACTGGTGCGGCCTAGGACATAGCTGGTGGCATAAGATCCCA
GCTGGCAGAAGATGCTGCTGCCGCCGATCTCACGGACGCACTCCGTATTG
GCGTCGCACATGTACCGCTGCGTGCACTTGTCCTCCGAGGTGCGATAGGT
TCGGACGTAGCCCTTCATCAGCGAGATTCCGGCGACGACGGCGTCGCTCA
CCGAGTCCCGCTTGCCCATGGAGCGGGCGGTCAGGGAGCGGTGCGAGAAG
GAGGTCTTCAGGGCGTCCAGCAGGTTCATCACGATCTGAATGAACTGCAT
GGGAGATCCACCGTTGTCGACCTTATCGATGCCATCGCTAGGGGCTCCGC
CGCCCAGCAAGGTGTTGATGATGCGAAGACCCATGGAGATAACATTCGCC
CAGGGACTGCCGCCCAAGCCAATGGAACTATCCACATCATCGGACTTGGT
TGGTGAGTTGACGGCTCCGTTGAAGAACATGGTCATCACGGTGGATAGCA
TGTTAGACCAGGTGAAACCGCCGGGTCCTCCCACACTCTCTTGGATCTGA
TTGGTCTCCAAATCATCCTCGATATCGTCCAGAGCCACCTTCTTCGAGGC
ATTCGGCTTCACCGCAAACTTTCTGGCCACACTCTCATCCCGGTAGACAG
GTGACTGGGTCACCTGGTGCTGCCTCTGATAGACCTCCTGCTGTGGAAAT
GCGTAGGTCATCAGCAGACAATTGCTGGCTACTATGGAGAGCAGCAGGTA
GGCGTGTACTTTCCGTTGAT

BS08941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PA 861 CG4702-RA 8..861 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 274..1128 870..16 4275 100 Minus
CG4702-RA 1375 CG4702-RA 344..1198 870..16 4275 100 Minus
CG4702-RD 1398 CG4702-RD 283..758 870..395 2380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123852 479..870 1960 100 Plus
3R 32079331 3R 12122171..12122424 144..397 1270 100 Plus
3R 32079331 3R 12121760..12121887 16..143 640 100 Plus
3R 32079331 3R 12123293..12123379 395..481 435 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:31 has no hits.

BS08941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:31 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 8..861 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:09 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 8..861 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:34 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 344..1206 6..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:51 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 344..1206 6..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:51 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12121752..12121887 6..143 97 <- Plus
3R 12122171..12122421 144..394 100 <- Plus
3R 12123293..12123378 395..480 100 <- Plus
3R 12123463..12123852 481..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:34 Download gff for BS08941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947474..7947609 6..143 97 <- Plus
arm_3R 7947893..7948143 144..394 100 <- Plus
arm_3R 7949015..7949100 395..480 100 <- Plus
arm_3R 7949185..7949574 481..870 100   Plus

BS08941.5prime Sequence

891 bp (794 high quality bases) assembled on 2006-01-18

> BS08941.5prime
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCTAGAAGCTTTCTAGACC

BS08941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PA 861 CG4702-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 259..1128 9..878 4320 99.8 Plus
CG4702-RA 1375 CG4702-RA 329..1198 9..878 4320 99.8 Plus
CG4702-RD 1398 CG4702-RD 268..758 9..499 2425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123867 415..9 2005 99.5 Minus
3R 32079331 3R 12122171..12122424 750..497 1270 100 Minus
3R 32079331 3R 12121760..12121887 878..751 640 100 Minus
3R 32079331 3R 12123293..12123379 499..413 435 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:28:48 has no hits.

BS08941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:32 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:10 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:48:22 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 326..1206 3..888 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:44 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 326..1206 3..888 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:44 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12121752..12121887 751..888 97 <- Minus
3R 12122171..12122421 500..750 100 <- Minus
3R 12123293..12123378 414..499 100 <- Minus
3R 12123463..12123870 5..413 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:48:22 Download gff for BS08941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947474..7947609 751..888 97 <- Minus
arm_3R 7947893..7948143 500..750 100 <- Minus
arm_3R 7949015..7949100 414..499 100 <- Minus
arm_3R 7949185..7949592 5..413 99   Minus

BS08941.complete Sequence

893 bp (893 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636320

> BS08941.complete
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCTAGAAGCTTTCTAGACCAT

BS08941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 861 CG4702-PC 1..861 17..877 4305 100 Plus
CG4702-RA 861 CG4702-PA 1..861 17..877 4305 100 Plus
CG4702-RD 945 CG4702-PD 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-RC 1305 CG4702-RC 259..1128 9..878 4320 99.8 Plus
CG4702-RA 1375 CG4702-RA 329..1198 9..878 4320 99.8 Plus
CG4702-RD 1398 CG4702-RD 268..758 9..499 2425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12123461..12123867 415..9 2005 99.5 Minus
3R 32079331 3R 12122171..12122424 750..497 1270 100 Minus
3R 32079331 3R 12121760..12121887 878..751 640 100 Minus
3R 32079331 3R 12123293..12123379 499..413 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:57:09 has no hits.

BS08941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:26 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:26 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 322..1202 3..888 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:20 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 337..1197 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:27 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 322..1202 3..888 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:34 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4702-RA 337..1197 17..877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:34 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12121761..12121887 751..877 100 <- Minus
3R 12122171..12122421 500..750 100 <- Minus
3R 12123293..12123378 414..499 100 <- Minus
3R 12123463..12123859 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:20 Download gff for BS08941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7947483..7947609 751..877 100 <- Minus
arm_3R 7947893..7948143 500..750 100 <- Minus
arm_3R 7949015..7949100 414..499 100 <- Minus
arm_3R 7949185..7949581 17..413 100   Minus

BS08941.pep Sequence

Translation from 16 to 876

> BS08941.pep
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEV*

BS08941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4702-PC 286 CG4702-PC 1..286 1..286 1486 100 Plus
CG4702-PA 286 CG4702-PA 1..286 1..286 1486 100 Plus
CG4702-PD 314 CG4702-PD 1..314 1..286 1447 91.1 Plus
CG4702-PB 314 CG4702-PB 1..314 1..286 1447 91.1 Plus