Clone Sequence Records
BS08941.3prime Sequence
870 bp (814 high quality bases) assembled on 2006-01-18
> BS08941.3prime
ATGGTCTAGAAAGCTTCTAGACCTCGTTGCACTCCAGATAGATCTGGCGA
CAGTCGAATCCGGAGCGACCTCTACGTCCGGCGTCGTACAGCTCCTCGAA
GTTGCTGCCACTGGTGCGGCCTAGGACATAGCTGGTGGCATAAGATCCCA
GCTGGCAGAAGATGCTGCTGCCGCCGATCTCACGGACGCACTCCGTATTG
GCGTCGCACATGTACCGCTGCGTGCACTTGTCCTCCGAGGTGCGATAGGT
TCGGACGTAGCCCTTCATCAGCGAGATTCCGGCGACGACGGCGTCGCTCA
CCGAGTCCCGCTTGCCCATGGAGCGGGCGGTCAGGGAGCGGTGCGAGAAG
GAGGTCTTCAGGGCGTCCAGCAGGTTCATCACGATCTGAATGAACTGCAT
GGGAGATCCACCGTTGTCGACCTTATCGATGCCATCGCTAGGGGCTCCGC
CGCCCAGCAAGGTGTTGATGATGCGAAGACCCATGGAGATAACATTCGCC
CAGGGACTGCCGCCCAAGCCAATGGAACTATCCACATCATCGGACTTGGT
TGGTGAGTTGACGGCTCCGTTGAAGAACATGGTCATCACGGTGGATAGCA
TGTTAGACCAGGTGAAACCGCCGGGTCCTCCCACACTCTCTTGGATCTGA
TTGGTCTCCAAATCATCCTCGATATCGTCCAGAGCCACCTTCTTCGAGGC
ATTCGGCTTCACCGCAAACTTTCTGGCCACACTCTCATCCCGGTAGACAG
GTGACTGGGTCACCTGGTGCTGCCTCTGATAGACCTCCTGCTGTGGAAAT
GCGTAGGTCATCAGCAGACAATTGCTGGCTACTATGGAGAGCAGCAGGTA
GGCGTGTACTTTCCGTTGAT
BS08941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PA | 861 | CG4702-RA | 8..861 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 274..1128 | 870..16 | 4275 | 100 | Minus |
CG4702-RA | 1375 | CG4702-RA | 344..1198 | 870..16 | 4275 | 100 | Minus |
CG4702-RD | 1398 | CG4702-RD | 283..758 | 870..395 | 2380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123852 | 479..870 | 1960 | 100 | Plus |
3R | 32079331 | 3R | 12122171..12122424 | 144..397 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 12121760..12121887 | 16..143 | 640 | 100 | Plus |
3R | 32079331 | 3R | 12123293..12123379 | 395..481 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:31 has no hits.
BS08941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:31 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 8..861 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:09 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 8..861 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:34 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 344..1206 | 6..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:51 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 344..1206 | 6..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:51 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12121752..12121887 | 6..143 | 97 | <- | Plus |
3R | 12122171..12122421 | 144..394 | 100 | <- | Plus |
3R | 12123293..12123378 | 395..480 | 100 | <- | Plus |
3R | 12123463..12123852 | 481..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:34 Download gff for
BS08941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947474..7947609 | 6..143 | 97 | <- | Plus |
arm_3R | 7947893..7948143 | 144..394 | 100 | <- | Plus |
arm_3R | 7949015..7949100 | 395..480 | 100 | <- | Plus |
arm_3R | 7949185..7949574 | 481..870 | 100 | | Plus |
BS08941.5prime Sequence
891 bp (794 high quality bases) assembled on 2006-01-18
> BS08941.5prime
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCTAGAAGCTTTCTAGACC
BS08941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PA | 861 | CG4702-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 259..1128 | 9..878 | 4320 | 99.8 | Plus |
CG4702-RA | 1375 | CG4702-RA | 329..1198 | 9..878 | 4320 | 99.8 | Plus |
CG4702-RD | 1398 | CG4702-RD | 268..758 | 9..499 | 2425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123867 | 415..9 | 2005 | 99.5 | Minus |
3R | 32079331 | 3R | 12122171..12122424 | 750..497 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 12121760..12121887 | 878..751 | 640 | 100 | Minus |
3R | 32079331 | 3R | 12123293..12123379 | 499..413 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:28:48 has no hits.
BS08941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:32 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:10 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:48:22 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 326..1206 | 3..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:44 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 326..1206 | 3..888 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:44 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12121752..12121887 | 751..888 | 97 | <- | Minus |
3R | 12122171..12122421 | 500..750 | 100 | <- | Minus |
3R | 12123293..12123378 | 414..499 | 100 | <- | Minus |
3R | 12123463..12123870 | 5..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:48:22 Download gff for
BS08941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947474..7947609 | 751..888 | 97 | <- | Minus |
arm_3R | 7947893..7948143 | 500..750 | 100 | <- | Minus |
arm_3R | 7949015..7949100 | 414..499 | 100 | <- | Minus |
arm_3R | 7949185..7949592 | 5..413 | 99 | | Minus |
BS08941.complete Sequence
893 bp (893 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636320
> BS08941.complete
GAAGTTATCAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGC
TGCTCTCCATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCA
CAGCAGGAGGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTA
CCGGGATGAGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGA
AGAAGGTGGCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATC
CAAGAGAGTGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATC
CACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGT
CCGATGATGTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAAT
GTTATCTCCATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGC
CCCTAGCGATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGT
TCATTCAGATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCG
CACCGCTCCCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGA
CGCCGTCGTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATC
GCACCTCGGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACG
GAGTGCGTCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATC
TTATGCCACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGG
AGCTGTACGACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAG
ATCTATCTGGAGTGCAACGAGGTCTAGAAGCTTTCTAGACCAT
BS08941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 861 | CG4702-PC | 1..861 | 17..877 | 4305 | 100 | Plus |
CG4702-RA | 861 | CG4702-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG4702-RD | 945 | CG4702-PD | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-RC | 1305 | CG4702-RC | 259..1128 | 9..878 | 4320 | 99.8 | Plus |
CG4702-RA | 1375 | CG4702-RA | 329..1198 | 9..878 | 4320 | 99.8 | Plus |
CG4702-RD | 1398 | CG4702-RD | 268..758 | 9..499 | 2425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12123461..12123867 | 415..9 | 2005 | 99.5 | Minus |
3R | 32079331 | 3R | 12122171..12122424 | 750..497 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 12121760..12121887 | 878..751 | 640 | 100 | Minus |
3R | 32079331 | 3R | 12123293..12123379 | 499..413 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:57:09 has no hits.
BS08941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:26 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:26 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 322..1202 | 3..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:20 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 337..1197 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:27 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 322..1202 | 3..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:34 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4702-RA | 337..1197 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:34 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12121761..12121887 | 751..877 | 100 | <- | Minus |
3R | 12122171..12122421 | 500..750 | 100 | <- | Minus |
3R | 12123293..12123378 | 414..499 | 100 | <- | Minus |
3R | 12123463..12123859 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:20 Download gff for
BS08941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7947483..7947609 | 751..877 | 100 | <- | Minus |
arm_3R | 7947893..7948143 | 500..750 | 100 | <- | Minus |
arm_3R | 7949015..7949100 | 414..499 | 100 | <- | Minus |
arm_3R | 7949185..7949581 | 17..413 | 100 | | Minus |
BS08941.pep Sequence
Translation from 16 to 876
> BS08941.pep
MWNQRKVHAYLLLSIVASNCLLMTYAFPQQEVYQRQHQVTQSPVYRDESV
ARKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTM
FFNGAVNSPTKSDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGI
DKVDNGGSPMQFIQIVMNLLDALKTSFSHRSLTARSMGKRDSVSDAVVAG
ISLMKGYVRTYRTSEDKCTQRYMCDANTECVREIGGSSIFCQLGSYATSY
VLGRTSGSNFEELYDAGRRGRSGFDCRQIYLECNEV*
BS08941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4702-PC | 286 | CG4702-PC | 1..286 | 1..286 | 1486 | 100 | Plus |
CG4702-PA | 286 | CG4702-PA | 1..286 | 1..286 | 1486 | 100 | Plus |
CG4702-PD | 314 | CG4702-PD | 1..314 | 1..286 | 1447 | 91.1 | Plus |
CG4702-PB | 314 | CG4702-PB | 1..314 | 1..286 | 1447 | 91.1 | Plus |