Clone Sequence Records
BS08943.3prime Sequence
896 bp (754 high quality bases) assembled on 2006-01-18
> BS08943.3prime
ATGGTCTAGAAAGCTTTTAAAGCTTTTGCGGCACATCTTTGCTGACGGCT
CCCGTTCGCTCGTGATTGACCACAAACTTCTTGGCGCCCGACAATCCCTG
CTTGTTAATGTAGAAGCTCTTTTGGGCCAGCGGCGAACCACCGCCATCGG
AATCAACCACCAGGCGATTCAGGAAAGTGGCAGCCGTCTTGGCACCACTA
TCGCAGGAGGATGACTCTATGCTAATGGTGGAGCATCCACCGATCGATGA
GGTCTCACTTTTGGCATCGTCCATCAGAGTGGCATCATCCACCAGGTCGT
TGACCAGCACCTGCGTACTGGACGATGCGGTGGACACTATGGAAGAGGTG
CGACTGCGGCAGGAGTGCGTCTCCGATTCGGGTATCGAGATACCCTCGTC
GATGCTTTGGCTCTGACTGCCGCCGGAAACGAGGCACATGGCTGCCTCCA
GATTGGGACCGCTGCCAACACCTCCGGGCGAGGCGGAAACAGGCGACGGA
CATCCCGAGCTGCTGCTATTGTTATTTATCCCATTTCCGCTCACCGAATT
GCTTGTGCACAGCTTCGAGATGAACAACTTGGGCGTGAGGCGGCCGTCAA
AGGTTCCGGAATCGGGACTGGGACACACCGACGAGGGCGATTGGCACACC
GGTGAGGAGCCGCGACTTTCCGTGAATATCTTCTTCACAGGCGGAGGTGA
GTACACGCTCCAGTTGCTGCCCTGAGTGGGGTTATCGTCCAGCTCAAATT
TTCTCTTCACGGGTCCCAGCTGGGATGGCCTCATGGCTATGGGAGACATC
GACCGCCTGGTGGCGAAAGTACGTCTCGTCGGCGACGGGGAGTATGGTAA
TCTCATGCCCGCGCGATTGTTTGTGGGACTGGGACTGGAGCAGCTG
BS08943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PA | 1521 | CG4497-RA | 642..1521 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 891..1770 | 896..17 | 4400 | 100 | Minus |
| CG4497-RA | 2566 | CG4497-RA | 716..1595 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7191402..7192052 | 17..667 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 7192492..7192722 | 666..896 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:45:38 has no hits.
BS08943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:36 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 642..1521 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:15 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 642..1521 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:14 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 716..1595 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:26 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 716..1595 | 17..896 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:26 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7191402..7192050 | 17..665 | 100 | <- | Plus |
| 2L | 7192492..7192722 | 666..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:14 Download gff for
BS08943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7191402..7192050 | 17..665 | 100 | <- | Plus |
| arm_2L | 7192492..7192722 | 666..896 | 100 | | Plus |
BS08943.5prime Sequence
867 bp (816 high quality bases) assembled on 2006-01-18
> BS08943.5prime
GAAGTTATCAGTCGACATGGAATCGGAGACGAAAGCGAGCGCCGAGGAGA
AGCAGCAGGAGAACCCCTCGACAGTGCCCATGGACACGCTGGATCCGCCG
CCACCGTGTGGCAGCTCCAAGACCCTCAAACGCTGCCTCAGTGTGCCAAT
AATCCGGACTCCGCCGGCGGGCAAATCGGGAAAGACGCCGATGACCACAC
GCGCAGCCGCAGCGGCTGCTCTGGCGGCCAAGGAGCACGAGCAGACGCCC
AAGAAGAGCCAACAGGTGGTGGATATCCAAATGCCGAATGCCCCATCCAT
CGATTGCTTCGGCAAGAACATACACATACGATCGCAGCCCAATTCCAGGG
AGGTTTCACCGGCTCCCGTCTTCAATATATTCACACCTCGAGCCAGAAGG
TATTCGGCCAGCTATAGTCCACTGACCACGGCAGCCAATGGAGCCACTCT
CTGTCTCACGCCTCGAGTTTCGCAGCTGCGGCAGGAGGAATGCGCAGATC
TAAACAGCCGGGAGGTTAACCATGAGCGGGAAGTTCATCGGGAAATACAA
ATTTCGCAGAGCTGGGAGGATCTCACGCTGGTGGCCGAGAACTGGTCGTG
CAAATCGGACGAGTTCTCCAATCCCCTGCAGGTCAGCCTGCCACCCACCG
GCACCACCAGCTGCTCCAGTCCCAGTCCCACAAACAATCGCGCGGGCATG
AGATTACCATACTCCCCGTCGCCGACGAGACGTACTTTCGCCACCAGGCG
GTCGATGTCTCCCATAGCCATGAGGCCATCCCAGCTGGGGACCGTGAAGA
GAAAATTTGAGCTGGACGATAACCCCACTCAGGGCAGCAACTGGAGCGTG
TACTCACCTCCGCCTGT
BS08943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PA | 1521 | CG4497-RA | 1..851 | 17..867 | 4205 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 250..1100 | 17..867 | 4225 | 99.8 | Plus |
| CG4497-RA | 2566 | CG4497-RA | 75..925 | 17..867 | 4225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7192513..7193363 | 867..17 | 4225 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:06:23 has no hits.
BS08943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:37 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:16 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:14 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..925 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:24 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..925 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:24 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7192513..7193363 | 17..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:14 Download gff for
BS08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7192513..7193363 | 17..867 | 99 | | Minus |
BS08943.complete Sequence
1553 bp (1553 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636321
> BS08943.complete
GAAGTTATCAGTCGACATGGAATCGGAGACGAAAGCGAGCGCCGAGGAGA
AGCAGCAGGAGAACCCCTCGACAGTGCCCATGGACACGCTGGATCCGCCG
CCACCGTGTGGCAGCTCCAAGACCCTCAAACGCTGCCTCAGTGTGCCAAT
AATCCGGACTCCGCCGGCGGGCAAATCGGGAAAGACGCCGATGACCACAC
GCGCAGCCGCAGCGGCTGCTCTGGCGGCCAAGGAGCACGAGCAGACGCCC
AAGAAGAGCCAACAGGTGGTGGATATCCAAATGCCGAATGCCCCATCCAT
CGATTGCTTCGGCAAGAACATACACATACGATCGCAGCCCAATTCCAGGG
AGGTTTCACCGGCTCCCGTCTTCAATATATTCACACCTCGAGCCAGAAGG
TATTCGGCCAGCTATAGTCCACTGACCACGGCAGCCAATGGAGCCACTCT
CTGTCTCACGCCTCGAGTTTCGCAGCTGCGGCAGGAGGAATGCGCAGATC
TAAACAGCCGGGAGGTTAACCATGAGCGGGAAGTTCATCGGGAAATACAA
ATTTCGCAGAGCTGGGAGGATCTCACGCTGGTGGCCGAGAACTGGTCGTG
CAAATCGGACGAGTTCTCCAATCCCCTGCAGGTCAGCCTGCCACCCACCG
GCACCACCAGCTGCTCCAGTCCCAGTCCCACAAACAATCGCGCGGGCATG
AGATTACCATACTCCCCGTCGCCGACGAGACGTACTTTCGCCACCAGGCG
GTCGATGTCTCCCATAGCCATGAGGCCATCCCAGCTGGGACCCGTGAAGA
GAAAATTTGAGCTGGACGATAACCCCACTCAGGGCAGCAACTGGAGCGTG
TACTCACCTCCGCCTGTGAAGAAGATATTCACGGAAAGTCGCGGCTCCTC
ACCGGTGTGCCAATCGCCCTCGTCGGTGTGTCCCAGTCCCGATTCCGGAA
CCTTTGACGGCCGCCTCACGCCCAAGTTGTTCATCTCGAAGCTGTGCACA
AGCAATTCGGTGAGCGGAAATGGGATAAATAACAATAGCAGCAGCTCGGG
ATGTCCGTCGCCTGTTTCCGCCTCGCCCGGAGGTGTTGGCAGCGGTCCCA
ATCTGGAGGCAGCCATGTGCCTCGTTTCCGGCGGCAGTCAGAGCCAAAGC
ATCGACGAGGGTATCTCGATACCCGAATCGGAGACGCACTCCTGCCGCAG
TCGCACCTCTTCCATAGTGTCCACCGCATCGTCCAGTACGCAGGTGCTGG
TCAACGACCTGGTGGATGATGCCACTCTGATGGACGATGCCAAAAGTGAG
ACCTCATCGATCGGTGGATGCTCCACCATTAGCATAGAGTCATCCTCCTG
CGATAGTGGTGCCAAGACGGCTGCCACTTTCCTGAATCGCCTGGTGGTTG
ATTCCGATGGCGGTGGTTCGCCGCTGGCCCAAAAGAGCTTCTACATTAAC
AAGCAGGGATTGTCGGGCGCCAAGAAGTTTGTGGTCAATCACGAGCGAAC
GGGAGCCGTCAGCAAAGATGTGCCGCAAAAGCTTTAAAAGCTTTCTAGAC
CAT
BS08943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 1521 | CG4497-PB | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| CG4497-RA | 1521 | CG4497-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 250..1770 | 17..1537 | 7605 | 100 | Plus |
| CG4497-RA | 2566 | CG4497-RA | 75..1595 | 17..1537 | 7605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7192492..7193363 | 888..17 | 4360 | 100 | Minus |
| 2L | 23513712 | 2L | 7191402..7192052 | 1537..887 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:54:16 has no hits.
BS08943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:28 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 1..1521 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:28 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 74..1594 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:39 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1593 | 17..1535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:28 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 74..1594 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:47 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1593 | 17..1535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:47 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7191404..7192050 | 889..1535 | 100 | <- | Minus |
| 2L | 7192492..7193363 | 17..888 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:39 Download gff for
BS08943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7191404..7192050 | 889..1535 | 100 | <- | Minus |
| arm_2L | 7192492..7193363 | 17..888 | 100 | | Minus |
BS08943.pep Sequence
Translation from 16 to 1536
> BS08943.pep
MESETKASAEEKQQENPSTVPMDTLDPPPPCGSSKTLKRCLSVPIIRTPP
AGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPSIDCFGK
NIHIRSQPNSREVSPAPVFNIFTPRARRYSASYSPLTTAANGATLCLTPR
VSQLRQEECADLNSREVNHEREVHREIQISQSWEDLTLVAENWSCKSDEF
SNPLQVSLPPTGTTSCSSPSPTNNRAGMRLPYSPSPTRRTFATRRSMSPI
AMRPSQLGPVKRKFELDDNPTQGSNWSVYSPPPVKKIFTESRGSSPVCQS
PSSVCPSPDSGTFDGRLTPKLFISKLCTSNSVSGNGINNNSSSSGCPSPV
SASPGGVGSGPNLEAAMCLVSGGSQSQSIDEGISIPESETHSCRSRTSSI
VSTASSSTQVLVNDLVDDATLMDDAKSETSSIGGCSTISIESSSCDSGAK
TAATFLNRLVVDSDGGGSPLAQKSFYINKQGLSGAKKFVVNHERTGAVSK
DVPQKL*
BS08943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PB | 506 | CG4497-PB | 1..506 | 1..506 | 2618 | 100 | Plus |
| CG4497-PA | 506 | CG4497-PA | 1..506 | 1..506 | 2618 | 100 | Plus |
