Clone BS08950 Report

Search the DGRC for BS08950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptDhpD-RA
Protein status:BS08950.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08950.3prime Sequence

916 bp (875 high quality bases) assembled on 2006-01-18

> BS08950.3prime
ATGGTCTAGAAAGCTTTCATTGGTATCCCTGTTTAATACGCTTGCCGGCC
ACGAAAACTTCTACAATGTTGCGGTCACTGCCTGTGTAAATGAACTTCTC
CACCAGCTCATCGACGCTCAGCCTCCGCAAGGGTTTATCGACGACGCTGA
CATCCACCAACAAAGCATCGAAATCCTTCCCTAGAGCAAAGTTTCCGGTC
AAGTGATCGAGGGACAGCGCTTTGGCGCCACCCAAAGTGGCCAAGTAGAG
CGCCTGCTTGTACTTCAACTGATGGTAATTGAAATCTTGTGTTTTGGACA
CACCCGTCCCGCGGATGTTCTGCTTCTTAAAAAAGTCTAAGTGTTTTGAC
ACGTCCAATGCGCGGAGCAGAACGTCCTGAATCGAGACGGAGTTTCCCCC
CGAAACGTCTGTGCCGAGACCTACGCTCACGCCGCCGCTCACCAGCCGTT
GGACATCGCACAGACCGGAGCTTAGCATTGTGTTCGAAGTGGGACAGTGG
GCTACCGAGCACCCCCGGACTTTAAGAAGTGCCACCTCGTCGTCCTCCAG
ATGCACGCCGTGAGCCAGTACAGTCTTATTCGTTAGCAGTCCAGCCTCGT
CGTATGCTCCGGCATAGCTGGTCTTAAATATCCCCTTTACCATCTCGATC
TCTTCCAGGTTTTCGCTGATGTGACTCTGGATATGCAGGTCAAATCGCTT
TGCTATATCGCCCAGACTCTTTAGCAGCTCCTTGCTGCAGCTAAGGGCAA
AGCGGGGCGTAATCGTTGGCATCACCATCGGGCTGCCGAGCTTCCGCACG
CCCTCCACGAAAGCCAGGGTTGCACTGACCGACTCTTCCGCAGTCTCCAC
GTAAAACTCGGGGCTGTTGCAGTTGGAGCAGACCTTTGCTATCAGTGCCC
GCTGGCCTTGACGCAC

BS08950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 448..1347 916..17 4450 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 543..1442 916..17 4470 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227535..4228094 17..576 2800 100 Plus
3R 32079331 3R 4228148..4228421 575..848 1370 100 Plus
3R 32079331 3R 4228479..4228547 848..916 315 97.1 Plus
Blast to na_te.dros performed on 2015-02-11 11:08:36 has no hits.

BS08950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:47 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 448..1347 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:29 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 448..1347 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:21 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 543..1442 17..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:06 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 543..1442 17..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:06 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4227535..4228092 17..574 100 <- Plus
3R 4228148..4228421 575..848 100 <- Plus
3R 4228480..4228547 849..916 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:21 Download gff for BS08950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53257..53814 17..574 100 <- Plus
arm_3R 53870..54143 575..848 100 <- Plus
arm_3R 54202..54269 849..916 97   Plus

BS08950.5prime Sequence

893 bp (816 high quality bases) assembled on 2006-01-18

> BS08950.5prime
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCGGGGGGTGCTCGGTAGCCCACTGTCCCACTT

BS08950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 1..877 17..893 4360 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..972 17..893 4370 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 495 100 Minus
3R 32079331 3R 4228005..4228094 893..804 435 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 05:05:46 has no hits.

BS08950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:48 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:31 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:11 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..972 7..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:21 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..972 7..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:21 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4228148..4228421 532..805 100 <- Minus
3R 4228480..4228634 377..531 100 <- Minus
3R 4228005..4228092 806..893 98 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229152 7..115 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:11 Download gff for BS08950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53727..53814 806..893 98 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus
arm_3R 54767..54874 7..115 96   Minus

BS08950.complete Sequence

1379 bp (1379 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636322

> BS08950.complete
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACAC
AATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGGCG
TGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGATT
CAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTTTT
TAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTTCA
ATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGGGT
GGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTAGG
GAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACCCT
TGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAGGC
AGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAACA
GGGATACCAATGAAAGCTTTCTAGACCAT

BS08950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1347 CG18143-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..1442 17..1363 6735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227535..4228094 1363..804 2800 100 Minus
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:49:19 has no hits.

BS08950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:29 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:29 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 98..1453 7..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:34 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1441 17..1362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:29 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 98..1453 7..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:45 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1441 17..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:45 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227536..4228092 806..1362 100 <- Minus
3R 4228148..4228421 532..805 100 <- Minus
3R 4228480..4228634 377..531 100 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229143 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:34 Download gff for BS08950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53258..53814 806..1362 100 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus
arm_3R 54767..54865 17..115 100   Minus

BS08950.pep Sequence

Translation from 16 to 1362

> BS08950.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQ*

BS08950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-PA 448 CG18143-PA 1..448 1..448 2302 100 Plus