Clone Sequence Records
BS08950.3prime Sequence
916 bp (875 high quality bases) assembled on 2006-01-18
> BS08950.3prime
ATGGTCTAGAAAGCTTTCATTGGTATCCCTGTTTAATACGCTTGCCGGCC
ACGAAAACTTCTACAATGTTGCGGTCACTGCCTGTGTAAATGAACTTCTC
CACCAGCTCATCGACGCTCAGCCTCCGCAAGGGTTTATCGACGACGCTGA
CATCCACCAACAAAGCATCGAAATCCTTCCCTAGAGCAAAGTTTCCGGTC
AAGTGATCGAGGGACAGCGCTTTGGCGCCACCCAAAGTGGCCAAGTAGAG
CGCCTGCTTGTACTTCAACTGATGGTAATTGAAATCTTGTGTTTTGGACA
CACCCGTCCCGCGGATGTTCTGCTTCTTAAAAAAGTCTAAGTGTTTTGAC
ACGTCCAATGCGCGGAGCAGAACGTCCTGAATCGAGACGGAGTTTCCCCC
CGAAACGTCTGTGCCGAGACCTACGCTCACGCCGCCGCTCACCAGCCGTT
GGACATCGCACAGACCGGAGCTTAGCATTGTGTTCGAAGTGGGACAGTGG
GCTACCGAGCACCCCCGGACTTTAAGAAGTGCCACCTCGTCGTCCTCCAG
ATGCACGCCGTGAGCCAGTACAGTCTTATTCGTTAGCAGTCCAGCCTCGT
CGTATGCTCCGGCATAGCTGGTCTTAAATATCCCCTTTACCATCTCGATC
TCTTCCAGGTTTTCGCTGATGTGACTCTGGATATGCAGGTCAAATCGCTT
TGCTATATCGCCCAGACTCTTTAGCAGCTCCTTGCTGCAGCTAAGGGCAA
AGCGGGGCGTAATCGTTGGCATCACCATCGGGCTGCCGAGCTTCCGCACG
CCCTCCACGAAAGCCAGGGTTGCACTGACCGACTCTTCCGCAGTCTCCAC
GTAAAACTCGGGGCTGTTGCAGTTGGAGCAGACCTTTGCTATCAGTGCCC
GCTGGCCTTGACGCAC
BS08950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18143-PA | 1347 | CG18143-RA | 448..1347 | 916..17 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 543..1442 | 916..17 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4227535..4228094 | 17..576 | 2800 | 100 | Plus |
3R | 32079331 | 3R | 4228148..4228421 | 575..848 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 4228479..4228547 | 848..916 | 315 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:08:36 has no hits.
BS08950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:47 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 448..1347 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:29 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 448..1347 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:21 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 543..1442 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:06 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 543..1442 | 17..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:06 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4227535..4228092 | 17..574 | 100 | <- | Plus |
3R | 4228148..4228421 | 575..848 | 100 | <- | Plus |
3R | 4228480..4228547 | 849..916 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:21 Download gff for
BS08950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 53257..53814 | 17..574 | 100 | <- | Plus |
arm_3R | 53870..54143 | 575..848 | 100 | <- | Plus |
arm_3R | 54202..54269 | 849..916 | 97 | | Plus |
BS08950.5prime Sequence
893 bp (816 high quality bases) assembled on 2006-01-18
> BS08950.5prime
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCGGGGGGTGCTCGGTAGCCCACTGTCCCACTT
BS08950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18143-PA | 1347 | CG18143-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 96..972 | 17..893 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4228148..4228421 | 805..532 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 4228727..4228990 | 377..114 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 4228479..4228634 | 532..377 | 780 | 100 | Minus |
3R | 32079331 | 3R | 4229045..4229143 | 115..17 | 495 | 100 | Minus |
3R | 32079331 | 3R | 4228005..4228094 | 893..804 | 435 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:05:46 has no hits.
BS08950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:48 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:31 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:11 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 87..972 | 7..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:21 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 87..972 | 7..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:21 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4228148..4228421 | 532..805 | 100 | <- | Minus |
3R | 4228480..4228634 | 377..531 | 100 | <- | Minus |
3R | 4228005..4228092 | 806..893 | 98 | <- | Minus |
3R | 4228728..4228988 | 116..376 | 100 | <- | Minus |
3R | 4229045..4229152 | 7..115 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:11 Download gff for
BS08950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 53727..53814 | 806..893 | 98 | <- | Minus |
arm_3R | 53870..54143 | 532..805 | 100 | <- | Minus |
arm_3R | 54202..54356 | 377..531 | 100 | <- | Minus |
arm_3R | 54450..54710 | 116..376 | 100 | <- | Minus |
arm_3R | 54767..54874 | 7..115 | 96 | | Minus |
BS08950.complete Sequence
1379 bp (1379 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636322
> BS08950.complete
GAAGTTATCAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACAC
AATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGGCG
TGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGATT
CAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTTTT
TAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTTCA
ATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGGGT
GGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTAGG
GAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACCCT
TGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAGGC
AGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAACA
GGGATACCAATGAAAGCTTTCTAGACCAT
BS08950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1347 | CG18143-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 96..1442 | 17..1363 | 6735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4227535..4228094 | 1363..804 | 2800 | 100 | Minus |
3R | 32079331 | 3R | 4228148..4228421 | 805..532 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 4228727..4228990 | 377..114 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 4228479..4228634 | 532..377 | 780 | 100 | Minus |
3R | 32079331 | 3R | 4229045..4229143 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:49:19 has no hits.
BS08950.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:29 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:29 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-RA | 98..1453 | 7..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:34 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 96..1441 | 17..1362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:29 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-RA | 98..1453 | 7..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:45 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 96..1441 | 17..1362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:45 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4227536..4228092 | 806..1362 | 100 | <- | Minus |
3R | 4228148..4228421 | 532..805 | 100 | <- | Minus |
3R | 4228480..4228634 | 377..531 | 100 | <- | Minus |
3R | 4228728..4228988 | 116..376 | 100 | <- | Minus |
3R | 4229045..4229143 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:34 Download gff for
BS08950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 53258..53814 | 806..1362 | 100 | <- | Minus |
arm_3R | 53870..54143 | 532..805 | 100 | <- | Minus |
arm_3R | 54202..54356 | 377..531 | 100 | <- | Minus |
arm_3R | 54450..54710 | 116..376 | 100 | <- | Minus |
arm_3R | 54767..54865 | 17..115 | 100 | | Minus |
BS08950.pep Sequence
Translation from 16 to 1362
> BS08950.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQ*
BS08950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-PA | 448 | CG18143-PA | 1..448 | 1..448 | 2302 | 100 | Plus |