Clone BS08955 Report

Search the DGRC for BS08955

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCycA-RA
Protein status:BS08955.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08955.3prime Sequence

902 bp (824 high quality bases) assembled on 2006-01-18

> BS08955.3prime
ATGGTCTAGAAAGCTTTTAAAACTTATAAAACAAATTCACGTTCGATTTA
GTATTAATATCCGGCTGCTGGTGCTCATCCTCTTTCTGCTTGCAATTGTA
AGCCTCACAGAGCTGATCGAAGTCGTCCTTGCTCATCTCAACGGATTCCA
TCATAGCCACCTTCTTGTAAGTGTCTCTATTGTACTTTTCCCGCATGGCC
TGCGTGTTGAGCTCCTTTGCCGTTTTGTGGGTGTGACACAGATGCAACAC
AACCGTTTTTAGGTCCTCCAGCTTGTAAGTCGTGATCTCCTCCAGCCTTG
GCGTCCACATCTCCATGCCCAAAATGTGACGCGCCAGTGCGACTGAAGCG
GATGACATAAGTGATGGCAAATATTGCAAGTACGTTTCTCCCTCCATGAG
CGACAACTCGGAAATATACAGCGTCATGTACTTCAGCTTCTCAGGCATGT
CGCAAAGTACAGCATAGGTGTTGATGAAGACGTAAGCAGTCGGTGTGCAC
AGATCGAAGGAGAGAATCTTCAAGATAACCTGCTCCATGCGTAGCACCTG
CGCCTTGGTGTAACTGTCGTCGGTGAGGAAGACAAACTCACCGACCTCTG
GGGGATAGATTTCCTCGTATTTTGCGGCAATATACATAGCTGCCGTGCCC
ACCAGCTGTAACTTGGAGCGCACCACCGCCATTTGGCTCANAAATCGATC
TAGATAAAAGACCGAGAGATAGAGCGTCTCCGTGTCCAGTTTGTACTCCT
CGGAAACCTCAACCAGCCAATCAATAAGGATGGAGCGCATATTGTGGCTA
ATGTCCTTCTGTCTGCGCATATAGAGTGGCTTGGGGCGATGTTTCTTCTC
GCTCTCCCGGAAATATTCCAGAATGTCCATCTGGTACTGAACCACTTCCA
AG

BS08955.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5940-PA 1476 CycA-RA 593..1476 900..17 4401 99.8 Minus
CG5940-PB 1038 CycA-RB 155..1038 900..17 4401 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CycA-RC 2916 CG5940-RC 1100..1983 900..17 4409 99.9 Minus
CycA-RA 2555 CG5940-RA 1103..1986 900..17 4409 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11827870..11828129 171..430 1255 98.8 Plus
3L 28110227 3L 11828461..11828686 624..849 1119 99.6 Plus
3L 28110227 3L 11828188..11828392 419..623 1025 100 Plus
3L 28110227 3L 11827652..11827809 17..174 775 99.4 Plus
3L 28110227 3L 11831727..11831779 848..900 265 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:56:13 has no hits.

BS08955.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:54 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CycA-PB 153..1038 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:39 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5940-PB 153..1038 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:50:47 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 1101..1995 5..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:02 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 1101..1995 5..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:02 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11827643..11827805 5..170 96 <- Plus
3L 11827870..11828117 171..418 100 <- Plus
3L 11828188..11828392 419..623 100 <- Plus
3L 11828461..11828684 624..847 99 <- Plus
3L 11831727..11831780 848..902 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:50:47 Download gff for BS08955.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11820743..11820905 5..170 96 <- Plus
arm_3L 11820970..11821217 171..418 100 <- Plus
arm_3L 11821288..11821492 419..623 100 <- Plus
arm_3L 11821561..11821784 624..847 99 <- Plus
arm_3L 11824827..11824880 848..902 98   Plus

BS08955.5prime Sequence

892 bp (852 high quality bases) assembled on 2006-01-18

> BS08955.5prime
GAAGTTATCAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCA
ACAAGGAGAATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAG
CAGCCGCTGGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCC
GCGGGCCAATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGG
CCGGGAAAGTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAG
AATGTGGAGTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCA
ATTCAAGACCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGC
CATCCGGCAAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTG
AAATTCGGTGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAAC
ACCCATGTCCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCA
TTCTCGGTGTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGA
GTCTCGCCAACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCA
GCGGTTCCTGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCC
GGGAGAGCGAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAG
AAGGACATTAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGA
GGTTTCCGAGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCT
TTTATCTAGATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTA
CAGCTGGTGGGCACGGCAGCTATGTATATTGCCGCAAAATAC

BS08955.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5940-PA 1476 CycA-RA 1..876 17..892 4380 100 Plus
CG5940-PB 1038 CycA-RB 1..438 455..892 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CycA-RA 2555 CG5940-RA 510..1386 16..892 4385 100 Plus
CycA-RC 2916 CG5940-RC 510..1383 16..892 4330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11831727..11831982 661..406 1280 100 Minus
3L 28110227 3L 11828461..11828686 885..660 1130 100 Minus
3L 28110227 3L 11832874..11833069 211..16 980 100 Minus
3L 28110227 3L 11832053..11832246 405..212 970 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:10:50 has no hits.

BS08955.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:55 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CycA-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:40 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5940-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:05 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 503..1386 10..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:50:23 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 503..1386 10..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:50:23 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11831727..11831982 406..661 100 <- Minus
3L 11832053..11832246 212..405 100 <- Minus
3L 11832874..11833076 10..211 98   Minus
3L 11828453..11828684 662..892 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:05 Download gff for BS08955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11821553..11821784 662..892 98 <- Minus
arm_3L 11824827..11825082 406..661 100 <- Minus
arm_3L 11825153..11825346 212..405 100 <- Minus
arm_3L 11825974..11826176 10..211 98   Minus

BS08955.complete Sequence

1508 bp (1508 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636323

> BS08955.complete
GAAGTTATCAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCA
ACAAGGAGAATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAG
CAGCCGCTGGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCC
GCGGGCCAATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGG
CCGGGAAAGTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAG
AATGTGGAGTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCA
ATTCAAGACCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGC
CATCCGGCAAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTG
AAATTCGGTGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAAC
ACCCATGTCCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCA
TTCTCGGTGTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGA
GTCTCGCCAACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCA
GCGGTTCCTGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCC
GGGAGAGCGAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAG
AAGGACATTAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGA
GGTTTCCGAGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCT
TTTATCTAGATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTA
CAGCTGGTGGGCACGGCAGCTATGTATATTGCCGCAAAATACGAGGAAAT
CTATCCCCCAGAGGTCGGTGAGTTTGTCTTCCTCACCGACGACAGTTACA
CCAAGGCGCAGGTGCTACGCATGGAGCAGGTTATCTTGAAGATTCTCTCC
TTCGATCTGTGCACACCGACTGCTTACGTCTTCATCAACACCTATGCTGT
ACTTTGCGACATGCCTGAGAAGCTGAAGTACATGACGCTGTATATTTCCG
AGTTGTCGCTCATGGAGGGAGAAACGTACTTGCAATATTTGCCATCACTT
ATGTCATCCGCTTCAGTCGCACTGGCGCGTCACATTTTGGGCATGGAGAT
GTGGACGCCAAGGCTGGAGGAGATCACGACTTACAAGCTGGAGGACCTAA
AAACGGTTGTGTTGCATCTGTGTCACACCCACAAAACGGCAAAGGAGCTC
AACACGCAGGCCATGCGGGAAAAGTACAATAGAGACACTTACAAGAAGGT
GGCTATGATGGAATCCGTTGAGATGAGCAAGGACGACTTCGATCAGCTCT
GTGAGGCTTACAATTGCAAGCAGAAAGAGGATGAGCACCAGCAGCCGGAT
ATTAATACTAAATCGAACGTGAATTTGTTTTATAAGTTTTAAAAGCTTTC
TAGACCAT

BS08955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CycA-RA 1476 CG5940-PA 1..1476 17..1492 7380 100 Plus
CycA-RC 1473 CG5940-PC 1..1473 17..1492 7300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CycA-RA 2555 CG5940-RA 510..1986 16..1492 7385 100 Plus
CycA-RC 2916 CG5940-RC 510..1983 16..1492 7305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11831727..11831982 661..406 1280 100 Minus
3L 28110227 3L 11827870..11828129 1338..1079 1255 98.8 Minus
3L 28110227 3L 11828461..11828686 885..660 1130 100 Minus
3L 28110227 3L 11828188..11828392 1090..886 1025 100 Minus
3L 28110227 3L 11832874..11833069 211..16 980 100 Minus
3L 28110227 3L 11832053..11832246 405..212 970 100 Minus
3L 28110227 3L 11827652..11827809 1492..1335 775 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:55:50 has no hits.

BS08955.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:18 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 1..1476 17..1492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:13 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 502..1994 10..1504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:54 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 511..1984 17..1490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:18 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 502..1994 10..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:04 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
CycA-RA 511..1984 17..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:04 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11832053..11832246 212..405 100 <- Minus
3L 11832874..11833068 17..211 100   Minus
3L 11827654..11827805 1339..1490 100 <- Minus
3L 11827870..11828117 1091..1338 100 <- Minus
3L 11828188..11828392 886..1090 100 <- Minus
3L 11828461..11828684 662..885 100 <- Minus
3L 11831727..11831982 406..661 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:54 Download gff for BS08955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11820754..11820905 1339..1490 100 <- Minus
arm_3L 11820970..11821217 1091..1338 100 <- Minus
arm_3L 11821288..11821492 886..1090 100 <- Minus
arm_3L 11821561..11821784 662..885 100 <- Minus
arm_3L 11824827..11825082 406..661 100 <- Minus
arm_3L 11825153..11825346 212..405 100 <- Minus
arm_3L 11825974..11826168 17..211 100   Minus

BS08955.pep Sequence

Translation from 16 to 1491

> BS08955.pep
MASFQIHQDMSNKENPGIKIPAGVKNTKQPLAVIGGKAEKNALAPRANFA
VLNGNNNVPRPAGKVQVFRDVRNLNVDENVEYGAKKSNVVPVVEQFKTFS
VYEDNNDTQVAPSGKSLASLVDKENHDVKFGAGQKELVDYDLDSTPMSVT
DVQSPMSVDRSILGVIQSSDISVGTETGVSPTGRVKELPPRNDRQRFLEV
VQYQMDILEYFRESEKKHRPKPLYMRRQKDISHNMRSILIDWLVEVSEEY
KLDTETLYLSVFYLDRFLSQMAVVRSKLQLVGTAAMYIAAKYEEIYPPEV
GEFVFLTDDSYTKAQVLRMEQVILKILSFDLCTPTAYVFINTYAVLCDMP
EKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHILGMEMWTPRL
EEITTYKLEDLKTVVLHLCHTHKTAKELNTQAMREKYNRDTYKKVAMMES
VEMSKDDFDQLCEAYNCKQKEDEHQQPDINTKSNVNLFYKF*

BS08955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CycA-PA 491 CG5940-PA 1..491 1..491 2524 100 Plus
CycA-PC 490 CG5940-PC 1..490 1..491 2507 99.8 Plus
CycB-PC 500 CG3510-PC 25..481 8..447 381 27 Plus
CycB-PB 524 CG3510-PB 49..505 8..447 381 27 Plus
CycB-PA 530 CG3510-PA 55..511 8..447 381 27 Plus