Clone Sequence Records
BS08955.3prime Sequence
902 bp (824 high quality bases) assembled on 2006-01-18
> BS08955.3prime
ATGGTCTAGAAAGCTTTTAAAACTTATAAAACAAATTCACGTTCGATTTA
GTATTAATATCCGGCTGCTGGTGCTCATCCTCTTTCTGCTTGCAATTGTA
AGCCTCACAGAGCTGATCGAAGTCGTCCTTGCTCATCTCAACGGATTCCA
TCATAGCCACCTTCTTGTAAGTGTCTCTATTGTACTTTTCCCGCATGGCC
TGCGTGTTGAGCTCCTTTGCCGTTTTGTGGGTGTGACACAGATGCAACAC
AACCGTTTTTAGGTCCTCCAGCTTGTAAGTCGTGATCTCCTCCAGCCTTG
GCGTCCACATCTCCATGCCCAAAATGTGACGCGCCAGTGCGACTGAAGCG
GATGACATAAGTGATGGCAAATATTGCAAGTACGTTTCTCCCTCCATGAG
CGACAACTCGGAAATATACAGCGTCATGTACTTCAGCTTCTCAGGCATGT
CGCAAAGTACAGCATAGGTGTTGATGAAGACGTAAGCAGTCGGTGTGCAC
AGATCGAAGGAGAGAATCTTCAAGATAACCTGCTCCATGCGTAGCACCTG
CGCCTTGGTGTAACTGTCGTCGGTGAGGAAGACAAACTCACCGACCTCTG
GGGGATAGATTTCCTCGTATTTTGCGGCAATATACATAGCTGCCGTGCCC
ACCAGCTGTAACTTGGAGCGCACCACCGCCATTTGGCTCANAAATCGATC
TAGATAAAAGACCGAGAGATAGAGCGTCTCCGTGTCCAGTTTGTACTCCT
CGGAAACCTCAACCAGCCAATCAATAAGGATGGAGCGCATATTGTGGCTA
ATGTCCTTCTGTCTGCGCATATAGAGTGGCTTGGGGCGATGTTTCTTCTC
GCTCTCCCGGAAATATTCCAGAATGTCCATCTGGTACTGAACCACTTCCA
AG
BS08955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5940-PA | 1476 | CycA-RA | 593..1476 | 900..17 | 4401 | 99.8 | Minus |
CG5940-PB | 1038 | CycA-RB | 155..1038 | 900..17 | 4401 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycA-RC | 2916 | CG5940-RC | 1100..1983 | 900..17 | 4409 | 99.9 | Minus |
CycA-RA | 2555 | CG5940-RA | 1103..1986 | 900..17 | 4409 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11827870..11828129 | 171..430 | 1255 | 98.8 | Plus |
3L | 28110227 | 3L | 11828461..11828686 | 624..849 | 1119 | 99.6 | Plus |
3L | 28110227 | 3L | 11828188..11828392 | 419..623 | 1025 | 100 | Plus |
3L | 28110227 | 3L | 11827652..11827809 | 17..174 | 775 | 99.4 | Plus |
3L | 28110227 | 3L | 11831727..11831779 | 848..900 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:56:13 has no hits.
BS08955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:54 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-PB | 153..1038 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:39 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5940-PB | 153..1038 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:50:47 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 1101..1995 | 5..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:02 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 1101..1995 | 5..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:02 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11827643..11827805 | 5..170 | 96 | <- | Plus |
3L | 11827870..11828117 | 171..418 | 100 | <- | Plus |
3L | 11828188..11828392 | 419..623 | 100 | <- | Plus |
3L | 11828461..11828684 | 624..847 | 99 | <- | Plus |
3L | 11831727..11831780 | 848..902 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:50:47 Download gff for
BS08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11820743..11820905 | 5..170 | 96 | <- | Plus |
arm_3L | 11820970..11821217 | 171..418 | 100 | <- | Plus |
arm_3L | 11821288..11821492 | 419..623 | 100 | <- | Plus |
arm_3L | 11821561..11821784 | 624..847 | 99 | <- | Plus |
arm_3L | 11824827..11824880 | 848..902 | 98 | | Plus |
BS08955.5prime Sequence
892 bp (852 high quality bases) assembled on 2006-01-18
> BS08955.5prime
GAAGTTATCAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCA
ACAAGGAGAATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAG
CAGCCGCTGGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCC
GCGGGCCAATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGG
CCGGGAAAGTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAG
AATGTGGAGTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCA
ATTCAAGACCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGC
CATCCGGCAAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTG
AAATTCGGTGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAAC
ACCCATGTCCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCA
TTCTCGGTGTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGA
GTCTCGCCAACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCA
GCGGTTCCTGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCC
GGGAGAGCGAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAG
AAGGACATTAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGA
GGTTTCCGAGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCT
TTTATCTAGATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTA
CAGCTGGTGGGCACGGCAGCTATGTATATTGCCGCAAAATAC
BS08955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5940-PA | 1476 | CycA-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG5940-PB | 1038 | CycA-RB | 1..438 | 455..892 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycA-RA | 2555 | CG5940-RA | 510..1386 | 16..892 | 4385 | 100 | Plus |
CycA-RC | 2916 | CG5940-RC | 510..1383 | 16..892 | 4330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11831727..11831982 | 661..406 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 11828461..11828686 | 885..660 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 11832874..11833069 | 211..16 | 980 | 100 | Minus |
3L | 28110227 | 3L | 11832053..11832246 | 405..212 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:10:50 has no hits.
BS08955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:54:55 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:40 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5940-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:05 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 503..1386 | 10..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:50:23 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 503..1386 | 10..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:50:23 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11831727..11831982 | 406..661 | 100 | <- | Minus |
3L | 11832053..11832246 | 212..405 | 100 | <- | Minus |
3L | 11832874..11833076 | 10..211 | 98 | | Minus |
3L | 11828453..11828684 | 662..892 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:05 Download gff for
BS08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11821553..11821784 | 662..892 | 98 | <- | Minus |
arm_3L | 11824827..11825082 | 406..661 | 100 | <- | Minus |
arm_3L | 11825153..11825346 | 212..405 | 100 | <- | Minus |
arm_3L | 11825974..11826176 | 10..211 | 98 | | Minus |
BS08955.complete Sequence
1508 bp (1508 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636323
> BS08955.complete
GAAGTTATCAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCA
ACAAGGAGAATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAG
CAGCCGCTGGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCC
GCGGGCCAATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGG
CCGGGAAAGTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAG
AATGTGGAGTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCA
ATTCAAGACCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGC
CATCCGGCAAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTG
AAATTCGGTGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAAC
ACCCATGTCCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCA
TTCTCGGTGTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGA
GTCTCGCCAACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCA
GCGGTTCCTGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCC
GGGAGAGCGAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAG
AAGGACATTAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGA
GGTTTCCGAGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCT
TTTATCTAGATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTA
CAGCTGGTGGGCACGGCAGCTATGTATATTGCCGCAAAATACGAGGAAAT
CTATCCCCCAGAGGTCGGTGAGTTTGTCTTCCTCACCGACGACAGTTACA
CCAAGGCGCAGGTGCTACGCATGGAGCAGGTTATCTTGAAGATTCTCTCC
TTCGATCTGTGCACACCGACTGCTTACGTCTTCATCAACACCTATGCTGT
ACTTTGCGACATGCCTGAGAAGCTGAAGTACATGACGCTGTATATTTCCG
AGTTGTCGCTCATGGAGGGAGAAACGTACTTGCAATATTTGCCATCACTT
ATGTCATCCGCTTCAGTCGCACTGGCGCGTCACATTTTGGGCATGGAGAT
GTGGACGCCAAGGCTGGAGGAGATCACGACTTACAAGCTGGAGGACCTAA
AAACGGTTGTGTTGCATCTGTGTCACACCCACAAAACGGCAAAGGAGCTC
AACACGCAGGCCATGCGGGAAAAGTACAATAGAGACACTTACAAGAAGGT
GGCTATGATGGAATCCGTTGAGATGAGCAAGGACGACTTCGATCAGCTCT
GTGAGGCTTACAATTGCAAGCAGAAAGAGGATGAGCACCAGCAGCCGGAT
ATTAATACTAAATCGAACGTGAATTTGTTTTATAAGTTTTAAAAGCTTTC
TAGACCAT
BS08955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycA-RA | 1476 | CG5940-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CycA-RC | 1473 | CG5940-PC | 1..1473 | 17..1492 | 7300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycA-RA | 2555 | CG5940-RA | 510..1986 | 16..1492 | 7385 | 100 | Plus |
CycA-RC | 2916 | CG5940-RC | 510..1983 | 16..1492 | 7305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11831727..11831982 | 661..406 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 11827870..11828129 | 1338..1079 | 1255 | 98.8 | Minus |
3L | 28110227 | 3L | 11828461..11828686 | 885..660 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 11828188..11828392 | 1090..886 | 1025 | 100 | Minus |
3L | 28110227 | 3L | 11832874..11833069 | 211..16 | 980 | 100 | Minus |
3L | 28110227 | 3L | 11832053..11832246 | 405..212 | 970 | 100 | Minus |
3L | 28110227 | 3L | 11827652..11827809 | 1492..1335 | 775 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:55:50 has no hits.
BS08955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:18 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 1..1476 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:13 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 502..1994 | 10..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:54 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 511..1984 | 17..1490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:18 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 502..1994 | 10..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:04 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycA-RA | 511..1984 | 17..1490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:04 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11832053..11832246 | 212..405 | 100 | <- | Minus |
3L | 11832874..11833068 | 17..211 | 100 | | Minus |
3L | 11827654..11827805 | 1339..1490 | 100 | <- | Minus |
3L | 11827870..11828117 | 1091..1338 | 100 | <- | Minus |
3L | 11828188..11828392 | 886..1090 | 100 | <- | Minus |
3L | 11828461..11828684 | 662..885 | 100 | <- | Minus |
3L | 11831727..11831982 | 406..661 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:54 Download gff for
BS08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11820754..11820905 | 1339..1490 | 100 | <- | Minus |
arm_3L | 11820970..11821217 | 1091..1338 | 100 | <- | Minus |
arm_3L | 11821288..11821492 | 886..1090 | 100 | <- | Minus |
arm_3L | 11821561..11821784 | 662..885 | 100 | <- | Minus |
arm_3L | 11824827..11825082 | 406..661 | 100 | <- | Minus |
arm_3L | 11825153..11825346 | 212..405 | 100 | <- | Minus |
arm_3L | 11825974..11826168 | 17..211 | 100 | | Minus |
BS08955.pep Sequence
Translation from 16 to 1491
> BS08955.pep
MASFQIHQDMSNKENPGIKIPAGVKNTKQPLAVIGGKAEKNALAPRANFA
VLNGNNNVPRPAGKVQVFRDVRNLNVDENVEYGAKKSNVVPVVEQFKTFS
VYEDNNDTQVAPSGKSLASLVDKENHDVKFGAGQKELVDYDLDSTPMSVT
DVQSPMSVDRSILGVIQSSDISVGTETGVSPTGRVKELPPRNDRQRFLEV
VQYQMDILEYFRESEKKHRPKPLYMRRQKDISHNMRSILIDWLVEVSEEY
KLDTETLYLSVFYLDRFLSQMAVVRSKLQLVGTAAMYIAAKYEEIYPPEV
GEFVFLTDDSYTKAQVLRMEQVILKILSFDLCTPTAYVFINTYAVLCDMP
EKLKYMTLYISELSLMEGETYLQYLPSLMSSASVALARHILGMEMWTPRL
EEITTYKLEDLKTVVLHLCHTHKTAKELNTQAMREKYNRDTYKKVAMMES
VEMSKDDFDQLCEAYNCKQKEDEHQQPDINTKSNVNLFYKF*
BS08955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycA-PA | 491 | CG5940-PA | 1..491 | 1..491 | 2524 | 100 | Plus |
CycA-PC | 490 | CG5940-PC | 1..490 | 1..491 | 2507 | 99.8 | Plus |
CycB-PC | 500 | CG3510-PC | 25..481 | 8..447 | 381 | 27 | Plus |
CycB-PB | 524 | CG3510-PB | 49..505 | 8..447 | 381 | 27 | Plus |
CycB-PA | 530 | CG3510-PA | 55..511 | 8..447 | 381 | 27 | Plus |