Clone BS08958 Report

Search the DGRC for BS08958

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptsgg-RB
Protein status:BS08958.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08958.3prime Sequence

875 bp (797 high quality bases) assembled on 2006-01-18

> BS08958.3prime
ATGGTCTAGAAAGCTTCTATGAATCTGTTACATTGGCGCCGCCGGCATTA
GTCGCGCCTATAGCGCCAGTTGCTGTTGCAGCTGCGGTCGCCGCACCGGC
TCCGCCACCACCACCAGCACCGCCAGCGACGGCGGCATTGGCTCCTCCGG
CAGCCACAGCGGACGGCGCTCCCGATGCTCCGCCGCTGCTACTGTTGTTA
CCAGATCCGGGTCCACCGGCACTCGCTCCGCCGGTTCCTGCTGTTGCTCC
GCCCGATCCGGATCCCGCAGCTGCTGCTGTACCCTGCGACTGTGGCTGGG
CGGATCCTTCCACCGAGGCACCACTGCCCGTTGACGAGACGCTGGTGGAG
CCGCTGGCCGCAATGGAGGCTGCTCCGCCGGCCGAGGGTCGATTGCCGCC
AGGTCCGGATGCGTTCTGCAGATGCTTGGGCAACAACTGCGGCACTAGGC
TGGGCTGTATTGAGAGCTCATGCTCTGTGAAGTTGAACAGCGGCGGCATA
TCGCGACCGTTGGGCAAGGTGTGATTACCCTCCATGCGTAGCTCATCGAA
GAACGGATGTGCGCAGGCCTTGAGCGGTGTGATCCTGGCACTGGGCGTAT
ACTCGAGCAGCAGGGACACCAAGTTGATAGCTTCTGTAGGAGTGCGTATA
CGGAAAACTTTCTGCCATGGATGACTCTTAATCTGAGGGAACTTGAATTC
CGTGTAGTTTGGATTCATTTCGCGTATCTGTTCTCTTGTCGGTGTGCCCA
GGACCTTGATGACCTCGACGAGCTGATCCACACCGGAATCGCCAGGGAAG
ATGGGCTGGCCCAGCAGCAGTTCGGCCAAAACGCAACCGGCACTCCAGAC
ATCGATCTTTGTTGTATAATTGATG

BS08958.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2621-PD 3204 sgg-RD 2346..3204 875..17 4295 100 Minus
CG2621-PH 1545 sgg-RH 687..1545 875..17 4295 100 Minus
CG2621-PI 1545 sgg-RI 687..1545 875..17 4295 100 Minus
CG2621-PG 1491 sgg-RG 633..1491 875..17 4295 100 Minus
CG2621-PK 1251 sgg-RK 393..1251 875..17 4295 100 Minus
CG2621-PB 1545 sgg-RB 687..1545 875..17 4295 100 Minus
CG2621-PE 1545 sgg-RE 687..1545 875..17 4295 100 Minus
CG2621-PF 1545 sgg-RF 687..1545 875..17 4295 100 Minus
CG2621-PC 1545 sgg-RC 687..1545 875..17 4295 100 Minus
CG2621-PL 1761 sgg-RL 720..1570 875..25 4255 100 Minus
CG2621-PJ 1728 sgg-RJ 687..1537 875..25 4255 100 Minus
CG2621-PA 1728 sgg-RA 687..1537 875..25 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RN 3182 CG2621-RN 1326..2184 875..17 4295 100 Minus
sgg-RC 3110 CG2621-RC 1235..2093 875..17 4295 100 Minus
sgg-RF 4244 CG2621-RF 1333..2191 875..17 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2673174..2673618 469..25 2225 100 Minus
X 23542271 X 2671628..2671824 853..657 985 100 Minus
X 23542271 X 2672914..2673103 658..469 950 100 Minus
3R 32079331 3R 31373192..31373316 868..744 205 77.6 Minus
Blast to na_te.dros performed 2015-02-11 23:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..7020 298..62 133 55.2 Minus
roo 9092 roo DM_ROO 9092bp 1048..1141 309..217 117 62.9 Minus

BS08958.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:00 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-PF 687..1545 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:46 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2621-PI 687..1545 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:31:49 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RF 1333..2191 17..875 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:47 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RF 1333..2191 17..875 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:47 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2671629..2671822 659..852 100 -> Minus
X 2672914..2673103 469..658 100 -> Minus
X 2671523..2671545 853..875 100 -> Minus
X 2673175..2673618 25..468 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:31:49 Download gff for BS08958.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2565556..2565578 853..875 100 -> Minus
arm_X 2565662..2565855 659..852 100 -> Minus
arm_X 2566947..2567136 469..658 100 -> Minus
arm_X 2567208..2567651 25..468 100   Minus

BS08958.5prime Sequence

908 bp (749 high quality bases) assembled on 2006-01-18

> BS08958.5prime
GAAGTTATCAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCG
AGGGCAACAAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGC
AGTCGCGATGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGG
CACCGATCGCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCA
ATGGCAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAA
CTGGTGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGA
ATTGCAAATAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGT
ACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTA
GTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGC
CAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATC
AACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGT
GATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAA
GCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATG
TATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGC
GCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTT
GGCCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGG
ATCAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAG
ATACGCGAAATGAATCCAACTACACGGAATTCAGTTCCCTCAAATTAAAG
TCATCCAT

BS08958.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2621-PH 1545 sgg-RH 1..853 17..869 4265 100 Plus
CG2621-PI 1545 sgg-RI 1..853 17..869 4265 100 Plus
CG2621-PJ 1728 sgg-RJ 1..853 17..869 4265 100 Plus
CG2621-PB 1545 sgg-RB 1..853 17..869 4265 100 Plus
CG2621-PA 1728 sgg-RA 1..853 17..869 4265 100 Plus
CG2621-PE 1545 sgg-RE 1..853 17..869 4265 100 Plus
CG2621-PF 1545 sgg-RF 1..853 17..869 4265 100 Plus
CG2621-PC 1545 sgg-RC 1..853 17..869 4265 100 Plus
CG2621-PL 1761 sgg-RL 119..886 102..869 3840 100 Plus
CG2621-PD 3204 sgg-RD 1745..2512 102..869 3840 100 Plus
CG2621-PG 1491 sgg-RG 32..799 102..869 3840 100 Plus
CG2621-PK 1251 sgg-RK 1..559 311..869 2795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 3110 CG2621-RC 549..1443 17..908 4385 99.6 Plus
sgg-RF 4244 CG2621-RF 647..1541 17..908 4385 99.6 Plus
sgg-RE 3055 CG2621-RE 494..1388 17..908 4385 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2671307..2671545 487..725 1195 100 Plus
X 23542271 X 2669913..2670103 102..292 955 100 Plus
X 23542271 X 2671628..2671814 725..908 770 97.9 Plus
X 23542271 X 2671119..2671231 375..487 565 100 Plus
3R 32079331 3R 31373036..31373316 554..834 490 78.3 Plus
X 23542271 X 2642009..2642095 17..103 435 100 Plus
X 23542271 X 2670172..2670257 291..376 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:18:21 has no hits.

BS08958.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:01 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-PF 1..895 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:48 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2621-PB 1..895 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:56 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..1388 17..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:04 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..1388 17..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:04 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2671629..2671814 726..908 97   Plus
X 2642009..2642093 17..101 100 -> Plus
X 2669913..2670103 102..292 100 -> Plus
X 2670174..2670257 293..376 100 -> Plus
X 2671121..2671231 377..487 100 -> Plus
X 2671308..2671545 488..725 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:56 Download gff for BS08958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2563946..2564136 102..292 100 -> Plus
arm_X 2564207..2564290 293..376 100 -> Plus
arm_X 2536042..2536126 17..101 100 -> Plus
arm_X 2565154..2565264 377..487 100 -> Plus
arm_X 2565341..2565578 488..725 100 -> Plus
arm_X 2565662..2565847 726..908 97   Plus

BS08958.complete Sequence

1577 bp (1577 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636324

> BS08958.complete
GAAGTTATCAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCG
AGGGCAACAAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGC
AGTCGCGATGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGG
CACCGATCGCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCA
ATGGCAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAA
CTGGTGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGA
ATTGCAAATAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGT
ACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTA
GTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGC
CAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATC
AACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGT
GATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAA
GCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATG
TATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGC
GCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTT
GGCCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGG
ATCAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAG
ATACGCGAAATGAATCCAAACTACACGGAATTCAAGTTCCCTCAGATTAA
GAGTCATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTA
TCAACTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACA
CCGCTCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACGCATGGAGGG
TAATCACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGTTCAACTTCA
CAGAGCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAGTTGTTGCCC
AAGCATCTGCAGAACGCATCCGGACCTGGCGGCAATCGACCCTCGGCCGG
CGGAGCAGCCTCCATTGCGGCCAGCGGCTCCACCAGCGTCTCGTCAACGG
GCAGTGGTGCCTCGGTGGAAGGATCCGCCCAGCCACAGTCGCAGGGTACA
GCAGCAGCTGCGGGATCCGGATCGGGCGGAGCAACAGCAGGAACCGGCGG
AGCGAGTGCCGGTGGACCCGGATCTGGTAACAACAGTAGCAGCGGCGGAG
CATCGGGAGCGCCGTCCGCTGTGGCTGCCGGAGGAGCCAATGCCGCCGTC
GCTGGCGGTGCTGGTGGTGGTGGCGGAGCCGGTGCGGCGACCGCAGCTGC
AACAGCAACTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAA
CAGATTCATAGAAGCTTTCTAGACCAT

BS08958.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 1545 CG2621-PC 1..1545 17..1561 7725 100 Plus
sgg-RF 1545 CG2621-PF 1..1545 17..1561 7725 100 Plus
sgg-RE 1545 CG2621-PE 1..1545 17..1561 7725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 3110 CG2621-RC 549..2093 17..1561 7725 100 Plus
sgg-RF 4244 CG2621-RF 647..2191 17..1561 7725 100 Plus
sgg-RE 3055 CG2621-RE 494..2038 17..1561 7725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2673174..2673618 1109..1553 2225 100 Plus
X 23542271 X 2671307..2671545 487..725 1195 100 Plus
X 23542271 X 2671628..2671824 725..921 985 100 Plus
X 23542271 X 2669913..2670103 102..292 955 100 Plus
X 23542271 X 2672914..2673103 920..1109 950 100 Plus
X 23542271 X 2671119..2671231 375..487 565 100 Plus
3R 32079331 3R 31373036..31373316 554..834 490 78.3 Plus
X 23542271 X 2642009..2642095 17..103 435 100 Plus
X 23542271 X 2670172..2670257 291..376 430 100 Plus
Blast to na_te.dros performed 2014-11-28 05:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1048..1141 1269..1361 117 62.9 Plus

BS08958.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:19 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 1..1545 17..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:19 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 288..1832 17..1561 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:00 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..2038 17..1561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:19 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 288..1832 17..1561 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:25 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..2038 17..1561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:25 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
X 2642009..2642093 17..101 100 -> Plus
X 2669913..2670103 102..292 100 -> Plus
X 2670174..2670257 293..376 100 -> Plus
X 2671121..2671231 377..487 100 -> Plus
X 2671308..2671545 488..725 100 -> Plus
X 2671629..2671822 726..919 100 -> Plus
X 2672914..2673103 920..1109 100 -> Plus
X 2673175..2673618 1110..1553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:00 Download gff for BS08958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2536042..2536126 17..101 100 -> Plus
arm_X 2563946..2564136 102..292 100 -> Plus
arm_X 2564207..2564290 293..376 100 -> Plus
arm_X 2565154..2565264 377..487 100 -> Plus
arm_X 2565341..2565578 488..725 100 -> Plus
arm_X 2565662..2565855 726..919 100 -> Plus
arm_X 2566947..2567136 920..1109 100 -> Plus
arm_X 2567208..2567651 1110..1553 100   Plus

BS08958.pep Sequence

Translation from 16 to 1560

> BS08958.pep
MSGRPRTSSFAEGNKQSPSLVLGGVKTCSRDGSKITTVVATPGQGTDRVQ
EVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMR
KLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTKQT
IPINFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCDFG
SAKQLLHGEPNVSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAELLL
GQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSHPWQ
KVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHTLP
NGRDMPPLFNFTEHELSIQPSLVPQLLPKHLQNASGPGGNRPSAGGAASI
AASGSTSVSSTGSGASVEGSAQPQSQGTAAAAGSGSGGATAGTGGASAGG
PGSGNNSSSGGASGAPSAVAAGGANAAVAGGAGGGGGAGAATAAATATGA
IGATNAGGANVTDS*

BS08958.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-PC 514 CG2621-PC 1..514 1..514 2648 100 Plus
sgg-PF 514 CG2621-PF 1..514 1..514 2648 100 Plus
sgg-PE 514 CG2621-PE 1..514 1..514 2648 100 Plus
sgg-PB 514 CG2621-PB 1..514 1..514 2648 100 Plus
sgg-PI 514 CG2621-PI 1..514 1..514 2648 100 Plus