Clone Sequence Records
BS08960.3prime Sequence
892 bp (751 high quality bases) assembled on 2006-01-18
> BS08960.3prime
ATGGTCTAGAAAGCTTCTAGGAGAGAACTGGTGCAGTGCATCCGTTATTC
AGGCGATACTCGGCATAGACCAGTCCGGTGTTGTGCCAGTGATAGAAGGC
GGCCACGATGATCAGGTGCCACCAGTTGTGCGAATGCCCAACGAAGTCCA
CCTTGCCGGTGAACCAGCGCTCCGGAATCTTGGCCGCATAGAAAACGAAG
GCGACGAGGCAGAGCAAGTACATGAGCACGATGCGGGGCACCATCAGCCT
GACTAGCTCGTTCTCCAGACCGCCCATGGCCACCGCCCAGTGGCCCAGAG
GTATGATTCCATAGGCAGACCAGAGTAGCAGCACCGCCACCTTGCCGTTC
ATGGACACATTCAAACGGGGTATCTGCACGGCAATGGCCAGTGCGAACAT
GCCCAGTGCAATCGTGGAGTACAGGGTGCGCAGGAAGGTGTGGCACCAGA
AGGCATAGTACATGCCACTGATATAGATGGCCACCAGCGACAGCGAAATG
CCCAGGAAGTCAACGGACAGAAAGAGCTCGTAGTGCTCCTCCGATTTGCA
GGAGAAGATGTGGTATATGGCGGACATCAGCATGCACAGACAGAAGCAGA
CCAGCAGGCAGACCACCAGCACCTGGTCGCTCAGGGAGGCGTGGAGGCGC
AGGAACTGCAGATCGAAGATGGTCAGTCCAATGAACAGGATGCAACCGGC
CAGATGGCTCCAGATGTTGATCGTCTCATTGGTCCACCAGAAAATGCTCT
GCAGGCACATTTTTGTGGAAGGTAGAAAGGTGCGGTATCCGCGACGAATG
TACGGGTTGAACTTCAGGTGACTGGGGGCATCATCGAAATTGCACAGCCA
TTTGAATTTGGACAGCTTGTCGTCGTAGTTGGGTCCATGCCC
BS08960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PA | 1056 | CG7530-RA | 181..1056 | 892..17 | 4380 | 100 | Minus |
CG7530-PB | 1056 | CG7530-RB | 181..1056 | 892..17 | 4380 | 100 | Minus |
CG7530-PC | 1056 | CG7530-RC | 181..1056 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RD | 1647 | CG7530-RD | 373..1250 | 892..15 | 4390 | 100 | Minus |
CG7530-RC | 1704 | CG7530-RC | 430..1307 | 892..15 | 4390 | 100 | Minus |
CG7530-RB | 1574 | CG7530-RB | 300..1177 | 892..15 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 248..722 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 14725157..14725390 | 15..248 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 14726040..14726147 | 722..829 | 540 | 100 | Plus |
3R | 32079331 | 3R | 14727189..14727252 | 829..892 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:06:48 has no hits.
BS08960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:04 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PA | 181..1056 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:51 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PC | 181..1056 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:56 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RB | 300..1185 | 5..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:11 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RB | 300..1185 | 5..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:11 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14725149..14725389 | 5..247 | 98 | <- | Plus |
3R | 14725457..14725930 | 248..721 | 100 | <- | Plus |
3R | 14726040..14726147 | 722..829 | 100 | <- | Plus |
3R | 14727190..14727252 | 830..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:56 Download gff for
BS08960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10550871..10551111 | 5..247 | 98 | <- | Plus |
arm_3R | 10551179..10551652 | 248..721 | 100 | <- | Plus |
arm_3R | 10551762..10551869 | 722..829 | 100 | <- | Plus |
arm_3R | 10552912..10552974 | 830..892 | 100 | | Plus |
BS08960.5prime Sequence
908 bp (878 high quality bases) assembled on 2006-01-18
> BS08960.5prime
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGGCA
BS08960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PA | 1056 | CG7530-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
CG7530-PB | 1056 | CG7530-RB | 1..889 | 17..905 | 4445 | 100 | Plus |
CG7530-PC | 1056 | CG7530-RC | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1704 | CG7530-RC | 249..1138 | 16..905 | 4450 | 100 | Plus |
CG7530-RB | 1574 | CG7530-RB | 119..1008 | 16..905 | 4450 | 100 | Plus |
CG7530-RA | 2349 | CG7530-RA | 894..1783 | 16..905 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 841..367 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 14727189..14727328 | 260..121 | 700 | 100 | Minus |
3R | 32079331 | 3R | 14726040..14726147 | 367..260 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14730511..14730616 | 121..16 | 530 | 100 | Minus |
3R | 32079331 | 3R | 14725326..14725390 | 905..841 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:29:47 has no hits.
BS08960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:06 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:53 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PC | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:37 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 883..1784 | 6..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:48 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 883..1784 | 6..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:48 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14725457..14725930 | 368..841 | 100 | <- | Minus |
3R | 14726040..14726147 | 260..367 | 100 | <- | Minus |
3R | 14727190..14727327 | 122..259 | 100 | <- | Minus |
3R | 14730511..14730627 | 6..121 | 96 | | Minus |
3R | 14725324..14725389 | 842..907 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:37 Download gff for
BS08960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10551046..10551111 | 842..907 | 98 | <- | Minus |
arm_3R | 10551179..10551652 | 368..841 | 100 | <- | Minus |
arm_3R | 10551762..10551869 | 260..367 | 100 | <- | Minus |
arm_3R | 10552912..10553049 | 122..259 | 100 | <- | Minus |
arm_3R | 10556233..10556349 | 6..121 | 96 | | Minus |
BS08960.complete Sequence
1088 bp (1088 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636325
> BS08960.complete
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGCCAAGATTCCGGAGCGCTGGTTCACCGGCAAGGTGGACTTCGTTG
GGCATTCGCACAACTGGTGGCACCTGATCATCGTGGCCGCCTTCTATCAC
TGGCACAACACCGGACTGGTCTATGCCGAGTATCGCCTGAATAACGGATG
CACTGCACCAGTTCTCTCCTAGAAGCTTTCTAGACCAT
BS08960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1056 | CG7530-PC | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG7530-RB | 1056 | CG7530-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG7530-RA | 1056 | CG7530-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1704 | CG7530-RC | 249..1307 | 16..1074 | 5295 | 100 | Plus |
CG7530-RB | 1574 | CG7530-RB | 119..1177 | 16..1074 | 5295 | 100 | Plus |
CG7530-RA | 2349 | CG7530-RA | 894..1952 | 16..1074 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 841..367 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 14725157..14725390 | 1074..841 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 14727189..14727328 | 260..121 | 700 | 100 | Minus |
3R | 32079331 | 3R | 14726040..14726147 | 367..260 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14730511..14730616 | 121..16 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:40:18 has no hits.
BS08960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:20 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:17 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 238..1315 | 6..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:03 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 895..1950 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:21 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 238..1315 | 6..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:48 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 895..1950 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:48 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14725159..14725389 | 842..1072 | 100 | <- | Minus |
3R | 14725457..14725930 | 368..841 | 100 | <- | Minus |
3R | 14726040..14726147 | 260..367 | 100 | <- | Minus |
3R | 14727190..14727327 | 122..259 | 100 | <- | Minus |
3R | 14730511..14730615 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:03 Download gff for
BS08960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10550881..10551111 | 842..1072 | 100 | <- | Minus |
arm_3R | 10551179..10551652 | 368..841 | 100 | <- | Minus |
arm_3R | 10551762..10551869 | 260..367 | 100 | <- | Minus |
arm_3R | 10552912..10553049 | 122..259 | 100 | <- | Minus |
arm_3R | 10556233..10556337 | 17..121 | 100 | | Minus |
BS08960.pep Sequence
Translation from 16 to 1071
> BS08960.pep
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
S*
BS08960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PC | 351 | CG7530-PC | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PB | 351 | CG7530-PB | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PA | 351 | CG7530-PA | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PD | 341 | CG7530-PD | 26..341 | 36..351 | 1713 | 100 | Plus |
AdipoR-PE | 444 | CG5315-PE | 85..439 | 1..349 | 419 | 28.6 | Plus |