Clone BS08960 Report

Search the DGRC for BS08960

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG7530-RA
Protein status:BS08960.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08960.3prime Sequence

892 bp (751 high quality bases) assembled on 2006-01-18

> BS08960.3prime
ATGGTCTAGAAAGCTTCTAGGAGAGAACTGGTGCAGTGCATCCGTTATTC
AGGCGATACTCGGCATAGACCAGTCCGGTGTTGTGCCAGTGATAGAAGGC
GGCCACGATGATCAGGTGCCACCAGTTGTGCGAATGCCCAACGAAGTCCA
CCTTGCCGGTGAACCAGCGCTCCGGAATCTTGGCCGCATAGAAAACGAAG
GCGACGAGGCAGAGCAAGTACATGAGCACGATGCGGGGCACCATCAGCCT
GACTAGCTCGTTCTCCAGACCGCCCATGGCCACCGCCCAGTGGCCCAGAG
GTATGATTCCATAGGCAGACCAGAGTAGCAGCACCGCCACCTTGCCGTTC
ATGGACACATTCAAACGGGGTATCTGCACGGCAATGGCCAGTGCGAACAT
GCCCAGTGCAATCGTGGAGTACAGGGTGCGCAGGAAGGTGTGGCACCAGA
AGGCATAGTACATGCCACTGATATAGATGGCCACCAGCGACAGCGAAATG
CCCAGGAAGTCAACGGACAGAAAGAGCTCGTAGTGCTCCTCCGATTTGCA
GGAGAAGATGTGGTATATGGCGGACATCAGCATGCACAGACAGAAGCAGA
CCAGCAGGCAGACCACCAGCACCTGGTCGCTCAGGGAGGCGTGGAGGCGC
AGGAACTGCAGATCGAAGATGGTCAGTCCAATGAACAGGATGCAACCGGC
CAGATGGCTCCAGATGTTGATCGTCTCATTGGTCCACCAGAAAATGCTCT
GCAGGCACATTTTTGTGGAAGGTAGAAAGGTGCGGTATCCGCGACGAATG
TACGGGTTGAACTTCAGGTGACTGGGGGCATCATCGAAATTGCACAGCCA
TTTGAATTTGGACAGCTTGTCGTCGTAGTTGGGTCCATGCCC

BS08960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PA 1056 CG7530-RA 181..1056 892..17 4380 100 Minus
CG7530-PB 1056 CG7530-RB 181..1056 892..17 4380 100 Minus
CG7530-PC 1056 CG7530-RC 181..1056 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RD 1647 CG7530-RD 373..1250 892..15 4390 100 Minus
CG7530-RC 1704 CG7530-RC 430..1307 892..15 4390 100 Minus
CG7530-RB 1574 CG7530-RB 300..1177 892..15 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 248..722 2375 100 Plus
3R 32079331 3R 14725157..14725390 15..248 1170 100 Plus
3R 32079331 3R 14726040..14726147 722..829 540 100 Plus
3R 32079331 3R 14727189..14727252 829..892 320 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:06:48 has no hits.

BS08960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:04 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PA 181..1056 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:51 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PC 181..1056 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:56 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RB 300..1185 5..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:11 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RB 300..1185 5..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:11 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14725149..14725389 5..247 98 <- Plus
3R 14725457..14725930 248..721 100 <- Plus
3R 14726040..14726147 722..829 100 <- Plus
3R 14727190..14727252 830..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:56 Download gff for BS08960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10550871..10551111 5..247 98 <- Plus
arm_3R 10551179..10551652 248..721 100 <- Plus
arm_3R 10551762..10551869 722..829 100 <- Plus
arm_3R 10552912..10552974 830..892 100   Plus

BS08960.5prime Sequence

908 bp (878 high quality bases) assembled on 2006-01-18

> BS08960.5prime
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGGCA

BS08960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PA 1056 CG7530-RA 1..889 17..905 4445 100 Plus
CG7530-PB 1056 CG7530-RB 1..889 17..905 4445 100 Plus
CG7530-PC 1056 CG7530-RC 1..889 17..905 4445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1704 CG7530-RC 249..1138 16..905 4450 100 Plus
CG7530-RB 1574 CG7530-RB 119..1008 16..905 4450 100 Plus
CG7530-RA 2349 CG7530-RA 894..1783 16..905 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 841..367 2375 100 Minus
3R 32079331 3R 14727189..14727328 260..121 700 100 Minus
3R 32079331 3R 14726040..14726147 367..260 540 100 Minus
3R 32079331 3R 14730511..14730616 121..16 530 100 Minus
3R 32079331 3R 14725326..14725390 905..841 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:29:47 has no hits.

BS08960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:06 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PA 1..890 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:53 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PC 1..890 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:37 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 883..1784 6..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:48 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 883..1784 6..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:48 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14725457..14725930 368..841 100 <- Minus
3R 14726040..14726147 260..367 100 <- Minus
3R 14727190..14727327 122..259 100 <- Minus
3R 14730511..14730627 6..121 96   Minus
3R 14725324..14725389 842..907 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:37 Download gff for BS08960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10551046..10551111 842..907 98 <- Minus
arm_3R 10551179..10551652 368..841 100 <- Minus
arm_3R 10551762..10551869 260..367 100 <- Minus
arm_3R 10552912..10553049 122..259 100 <- Minus
arm_3R 10556233..10556349 6..121 96   Minus

BS08960.complete Sequence

1088 bp (1088 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636325

> BS08960.complete
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGCCAAGATTCCGGAGCGCTGGTTCACCGGCAAGGTGGACTTCGTTG
GGCATTCGCACAACTGGTGGCACCTGATCATCGTGGCCGCCTTCTATCAC
TGGCACAACACCGGACTGGTCTATGCCGAGTATCGCCTGAATAACGGATG
CACTGCACCAGTTCTCTCCTAGAAGCTTTCTAGACCAT

BS08960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1056 CG7530-PC 1..1056 17..1072 5280 100 Plus
CG7530-RB 1056 CG7530-PB 1..1056 17..1072 5280 100 Plus
CG7530-RA 1056 CG7530-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1704 CG7530-RC 249..1307 16..1074 5295 100 Plus
CG7530-RB 1574 CG7530-RB 119..1177 16..1074 5295 100 Plus
CG7530-RA 2349 CG7530-RA 894..1952 16..1074 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 841..367 2375 100 Minus
3R 32079331 3R 14725157..14725390 1074..841 1170 100 Minus
3R 32079331 3R 14727189..14727328 260..121 700 100 Minus
3R 32079331 3R 14726040..14726147 367..260 540 100 Minus
3R 32079331 3R 14730511..14730616 121..16 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:40:18 has no hits.

BS08960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:20 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:17 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 238..1315 6..1084 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:03 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 895..1950 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:21 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 238..1315 6..1084 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:48 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 895..1950 17..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:48 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14725159..14725389 842..1072 100 <- Minus
3R 14725457..14725930 368..841 100 <- Minus
3R 14726040..14726147 260..367 100 <- Minus
3R 14727190..14727327 122..259 100 <- Minus
3R 14730511..14730615 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:03 Download gff for BS08960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10550881..10551111 842..1072 100 <- Minus
arm_3R 10551179..10551652 368..841 100 <- Minus
arm_3R 10551762..10551869 260..367 100 <- Minus
arm_3R 10552912..10553049 122..259 100 <- Minus
arm_3R 10556233..10556337 17..121 100   Minus

BS08960.pep Sequence

Translation from 16 to 1071

> BS08960.pep
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
S*

BS08960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PC 351 CG7530-PC 1..351 1..351 1900 100 Plus
CG7530-PB 351 CG7530-PB 1..351 1..351 1900 100 Plus
CG7530-PA 351 CG7530-PA 1..351 1..351 1900 100 Plus
CG7530-PD 341 CG7530-PD 26..341 36..351 1713 100 Plus
AdipoR-PE 444 CG5315-PE 85..439 1..349 419 28.6 Plus