Clone BS08961 Report

Search the DGRC for BS08961

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptRab8-RA
Protein status:BS08961.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08961.3prime Sequence

654 bp (653 high quality bases) assembled on 2006-01-18

> BS08961.3prime
ATGGTCTAGAAAGCTTTCAAAGCAGACTGCACCTGGACAACCAACTGTCC
TTCGTCCGACTGTCCATCGGTTTCAGCTGATGGCCGCCCTTGGGTGGGTT
GTTCGCCTCCATTCGCTTTTCCGTTTTCGCTTTGATATCACTGGCTAGGG
TGAGGAAGGCTTCTTCCACGTTAATGCTGGCCTTCGCGGAGGTCTCCATG
AACTTGATGCCATACTCGATGGCCAATTGTTCGCCGCGCTCTTTTGAAAC
CTGTCGCTTATCGGTCAATTCGCACTTGTTTCCCAGCAGCATTTTCTCGA
CATCGGCGGACGCATTTTCCTCGATATTCCTGATCCAGTTTTTGATGTTC
TCGAAGGACTTTTCTTGGGTTATGTCATATACCAGCATGATGCCCATGGC
ACCTCTGTAATAGGCCGTGGTGATTGTGCGAAAACGCTCCTGGCCGGCAG
TGTCCCATATCTGCAGCTTAATCTTCTTGTTATCTAATTCAATTGTTCTA
ATTTTAAAATCGATACCTATTGTGGATATAAACGTTGTGTTGAAGGCGTC
CTCAGAGAATCGGAAGAGGATGCAGGTCTTGCCCACTCCGGAGTCACCGA
TCAGGAGCAGTTTGAACAGATAGTCGTAGGTTTTGGCCATGTCGACTGAT
AACT

BS08961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8287-PA 624 Rab8-RA 1..624 640..17 3120 100 Minus
CG17060-PA 615 Rab10-RA 165..209 479..435 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1198 640..17 3120 100 Minus
Rab8-RA 2263 CG8287-RA 575..1198 640..17 3120 100 Minus
Rab8-RB 1068 CG8287-RB 50..551 518..17 2510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 249..456 1040 100 Plus
3L 28110227 3L 19868723..19868866 109..252 720 100 Plus
3L 28110227 3L 19870379..19870504 515..640 630 100 Plus
3L 28110227 3L 19868553..19868646 17..110 470 100 Plus
3L 28110227 3L 19869367..19869430 455..518 320 100 Plus
X 23542271 X 20252275..20252409 479..345 315 82.2 Minus
X 23542271 X 20251640..20251759 634..515 225 79.2 Minus
3R 32079331 3R 21114776..21114868 464..372 180 79.6 Minus
Blast to na_te.dros performed on 2015-02-11 11:08:28 has no hits.

BS08961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:07 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:55 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8287-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:19 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1198 17..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:46 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1198 17..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:46 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868553..19868645 17..109 100 <- Plus
3L 19868724..19868864 110..250 100 <- Plus
3L 19869103..19869307 251..455 100 <- Plus
3L 19869368..19869428 456..516 100 <- Plus
3L 19870381..19870510 517..648 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:19 Download gff for BS08961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861653..19861745 17..109 100 <- Plus
arm_3L 19861824..19861964 110..250 100 <- Plus
arm_3L 19862203..19862407 251..455 100 <- Plus
arm_3L 19862468..19862528 456..516 100 <- Plus
arm_3L 19863481..19863610 517..648 96   Plus

BS08961.5prime Sequence

654 bp (653 high quality bases) assembled on 2006-01-18

> BS08961.5prime
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTA
GACC

BS08961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8287-PA 624 Rab8-RA 1..624 17..640 3120 100 Plus
CG17060-PA 615 Rab10-RA 165..209 178..222 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1198 17..640 3120 100 Plus
Rab8-RA 2263 CG8287-RA 575..1198 17..640 3120 100 Plus
Rab8-RB 1068 CG8287-RB 50..551 139..640 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 408..201 1040 100 Minus
3L 28110227 3L 19868723..19868866 548..405 720 100 Minus
3L 28110227 3L 19870379..19870504 142..17 630 100 Minus
3L 28110227 3L 19868553..19868646 640..547 470 100 Minus
3L 28110227 3L 19869367..19869430 202..139 320 100 Minus
X 23542271 X 20252275..20252409 178..312 315 82.2 Plus
X 23542271 X 20251640..20251759 23..142 225 79.2 Plus
3R 32079331 3R 21114776..21114868 193..285 180 79.6 Plus
Blast to na_te.dros performed on 2015-02-11 10:30:31 has no hits.

BS08961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:08 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:56 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8287-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:42 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1198 9..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:17 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1198 9..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:17 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868553..19868645 548..640 100 <- Minus
3L 19868724..19868864 407..547 100 <- Minus
3L 19869103..19869307 202..406 100 <- Minus
3L 19869368..19869428 141..201 100 <- Minus
3L 19870381..19870510 9..140 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:42 Download gff for BS08961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861653..19861745 548..640 100 <- Minus
arm_3L 19861824..19861964 407..547 100 <- Minus
arm_3L 19862203..19862407 202..406 100 <- Minus
arm_3L 19862468..19862528 141..201 100 <- Minus
arm_3L 19863481..19863610 9..140 96   Minus

BS08961.complete Sequence

656 bp (656 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636326

> BS08961.complete
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTA
GACCAT

BS08961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 624 CG8287-PC 1..624 17..640 3120 100 Plus
Rab8-RA 624 CG8287-PA 1..624 17..640 3120 100 Plus
Rab8-RB 519 CG8287-PB 18..519 139..640 2510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1198 17..640 3120 100 Plus
Rab8-RA 2263 CG8287-RA 575..1198 17..640 3120 100 Plus
Rab8-RB 1068 CG8287-RB 50..551 139..640 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 408..201 1040 100 Minus
3L 28110227 3L 19868723..19868866 548..405 720 100 Minus
3L 28110227 3L 19870379..19870504 142..17 630 100 Minus
3L 28110227 3L 19868553..19868646 640..547 470 100 Minus
3L 28110227 3L 19869367..19869430 202..139 320 100 Minus
X 23542271 X 20252275..20252409 178..312 315 82.2 Plus
X 23542271 X 20251640..20251759 23..142 225 79.2 Plus
3R 32079331 3R 21114776..21114868 193..285 180 79.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:03:14 has no hits.

BS08961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:48 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:33 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 546..1177 9..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:35 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 575..1197 17..639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:48 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 546..1177 9..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:17 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 575..1197 17..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:17 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19868554..19868645 548..639 100 <- Minus
3L 19868724..19868864 407..547 100 <- Minus
3L 19869103..19869307 202..406 100 <- Minus
3L 19869368..19869428 141..201 100 <- Minus
3L 19870381..19870504 17..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:35 Download gff for BS08961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861654..19861745 548..639 100 <- Minus
arm_3L 19861824..19861964 407..547 100 <- Minus
arm_3L 19862203..19862407 202..406 100 <- Minus
arm_3L 19862468..19862528 141..201 100 <- Minus
arm_3L 19863481..19863604 17..140 100   Minus

BS08961.pep Sequence

Translation from 16 to 639

> BS08961.pep
MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTI
ELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIK
NWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMET
SAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGGHQLKPMDSRTKDSW
LSRCSLL*

BS08961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-PC 207 CG8287-PC 1..207 1..207 1061 100 Plus
Rab8-PA 207 CG8287-PA 1..207 1..207 1061 100 Plus
Rab8-PB 172 CG8287-PB 7..172 42..207 851 100 Plus
Rab10-PA 204 CG17060-PA 4..182 3..181 706 76 Plus
Rab1-PA 205 CG3320-PA 8..173 5..170 561 62 Plus