Clone Sequence Records
BS08961.3prime Sequence
654 bp (653 high quality bases) assembled on 2006-01-18
> BS08961.3prime
ATGGTCTAGAAAGCTTTCAAAGCAGACTGCACCTGGACAACCAACTGTCC
TTCGTCCGACTGTCCATCGGTTTCAGCTGATGGCCGCCCTTGGGTGGGTT
GTTCGCCTCCATTCGCTTTTCCGTTTTCGCTTTGATATCACTGGCTAGGG
TGAGGAAGGCTTCTTCCACGTTAATGCTGGCCTTCGCGGAGGTCTCCATG
AACTTGATGCCATACTCGATGGCCAATTGTTCGCCGCGCTCTTTTGAAAC
CTGTCGCTTATCGGTCAATTCGCACTTGTTTCCCAGCAGCATTTTCTCGA
CATCGGCGGACGCATTTTCCTCGATATTCCTGATCCAGTTTTTGATGTTC
TCGAAGGACTTTTCTTGGGTTATGTCATATACCAGCATGATGCCCATGGC
ACCTCTGTAATAGGCCGTGGTGATTGTGCGAAAACGCTCCTGGCCGGCAG
TGTCCCATATCTGCAGCTTAATCTTCTTGTTATCTAATTCAATTGTTCTA
ATTTTAAAATCGATACCTATTGTGGATATAAACGTTGTGTTGAAGGCGTC
CTCAGAGAATCGGAAGAGGATGCAGGTCTTGCCCACTCCGGAGTCACCGA
TCAGGAGCAGTTTGAACAGATAGTCGTAGGTTTTGGCCATGTCGACTGAT
AACT
BS08961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8287-PA | 624 | Rab8-RA | 1..624 | 640..17 | 3120 | 100 | Minus |
CG17060-PA | 615 | Rab10-RA | 165..209 | 479..435 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1198 | 640..17 | 3120 | 100 | Minus |
Rab8-RA | 2263 | CG8287-RA | 575..1198 | 640..17 | 3120 | 100 | Minus |
Rab8-RB | 1068 | CG8287-RB | 50..551 | 518..17 | 2510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 249..456 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 19868723..19868866 | 109..252 | 720 | 100 | Plus |
3L | 28110227 | 3L | 19870379..19870504 | 515..640 | 630 | 100 | Plus |
3L | 28110227 | 3L | 19868553..19868646 | 17..110 | 470 | 100 | Plus |
3L | 28110227 | 3L | 19869367..19869430 | 455..518 | 320 | 100 | Plus |
X | 23542271 | X | 20252275..20252409 | 479..345 | 315 | 82.2 | Minus |
X | 23542271 | X | 20251640..20251759 | 634..515 | 225 | 79.2 | Minus |
3R | 32079331 | 3R | 21114776..21114868 | 464..372 | 180 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:08:28 has no hits.
BS08961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:07 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:55 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8287-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:19 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1198 | 17..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:46 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1198 | 17..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:46 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868553..19868645 | 17..109 | 100 | <- | Plus |
3L | 19868724..19868864 | 110..250 | 100 | <- | Plus |
3L | 19869103..19869307 | 251..455 | 100 | <- | Plus |
3L | 19869368..19869428 | 456..516 | 100 | <- | Plus |
3L | 19870381..19870510 | 517..648 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:19 Download gff for
BS08961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861653..19861745 | 17..109 | 100 | <- | Plus |
arm_3L | 19861824..19861964 | 110..250 | 100 | <- | Plus |
arm_3L | 19862203..19862407 | 251..455 | 100 | <- | Plus |
arm_3L | 19862468..19862528 | 456..516 | 100 | <- | Plus |
arm_3L | 19863481..19863610 | 517..648 | 96 | | Plus |
BS08961.5prime Sequence
654 bp (653 high quality bases) assembled on 2006-01-18
> BS08961.5prime
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTA
GACC
BS08961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8287-PA | 624 | Rab8-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17060-PA | 615 | Rab10-RA | 165..209 | 178..222 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1198 | 17..640 | 3120 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1198 | 17..640 | 3120 | 100 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..551 | 139..640 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 408..201 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 548..405 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 142..17 | 630 | 100 | Minus |
3L | 28110227 | 3L | 19868553..19868646 | 640..547 | 470 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 202..139 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 178..312 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 23..142 | 225 | 79.2 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 193..285 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:30:31 has no hits.
BS08961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:08 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:59:56 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8287-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:42 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1198 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:17 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1198 | 9..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:17 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868553..19868645 | 548..640 | 100 | <- | Minus |
3L | 19868724..19868864 | 407..547 | 100 | <- | Minus |
3L | 19869103..19869307 | 202..406 | 100 | <- | Minus |
3L | 19869368..19869428 | 141..201 | 100 | <- | Minus |
3L | 19870381..19870510 | 9..140 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:42 Download gff for
BS08961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861653..19861745 | 548..640 | 100 | <- | Minus |
arm_3L | 19861824..19861964 | 407..547 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 202..406 | 100 | <- | Minus |
arm_3L | 19862468..19862528 | 141..201 | 100 | <- | Minus |
arm_3L | 19863481..19863610 | 9..140 | 96 | | Minus |
BS08961.complete Sequence
656 bp (656 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636326
> BS08961.complete
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTA
GACCAT
BS08961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 624 | CG8287-PC | 1..624 | 17..640 | 3120 | 100 | Plus |
Rab8-RA | 624 | CG8287-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Rab8-RB | 519 | CG8287-PB | 18..519 | 139..640 | 2510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1198 | 17..640 | 3120 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1198 | 17..640 | 3120 | 100 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..551 | 139..640 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 408..201 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 548..405 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 142..17 | 630 | 100 | Minus |
3L | 28110227 | 3L | 19868553..19868646 | 640..547 | 470 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 202..139 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 178..312 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 23..142 | 225 | 79.2 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 193..285 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:03:14 has no hits.
BS08961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:48 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:33 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 546..1177 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:35 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 575..1197 | 17..639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:48 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 546..1177 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:17 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 575..1197 | 17..639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:17 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868554..19868645 | 548..639 | 100 | <- | Minus |
3L | 19868724..19868864 | 407..547 | 100 | <- | Minus |
3L | 19869103..19869307 | 202..406 | 100 | <- | Minus |
3L | 19869368..19869428 | 141..201 | 100 | <- | Minus |
3L | 19870381..19870504 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:35 Download gff for
BS08961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861654..19861745 | 548..639 | 100 | <- | Minus |
arm_3L | 19861824..19861964 | 407..547 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 202..406 | 100 | <- | Minus |
arm_3L | 19862468..19862528 | 141..201 | 100 | <- | Minus |
arm_3L | 19863481..19863604 | 17..140 | 100 | | Minus |
BS08961.pep Sequence
Translation from 16 to 639
> BS08961.pep
MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTI
ELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIK
NWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMET
SAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGGHQLKPMDSRTKDSW
LSRCSLL*
BS08961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-PC | 207 | CG8287-PC | 1..207 | 1..207 | 1061 | 100 | Plus |
Rab8-PA | 207 | CG8287-PA | 1..207 | 1..207 | 1061 | 100 | Plus |
Rab8-PB | 172 | CG8287-PB | 7..172 | 42..207 | 851 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 4..182 | 3..181 | 706 | 76 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..173 | 5..170 | 561 | 62 | Plus |