Clone Sequence Records
BS08964.3prime Sequence
897 bp (865 high quality bases) assembled on 2006-01-18
> BS08964.3prime
ATGGTCTAGAAAGCTTTTATTGCTCTTCTGTCCACTCGGTGGATTTCTTG
GCCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGT
GTGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCAT
CGTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAG
CTGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTT
GAAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGAT
CGAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCG
CCGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATC
CCGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACT
CACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACG
CCAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATG
AGTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCAT
TATCAATTGCGTCCAGTTCGTTGATAAAATTCCTATAGATCTGAATAAAG
GCCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAG
GATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCAC
TGCTTAGCCTGACAACGTTGTAGTCCTCGCTTACATCTGGGCGAACGGAA
CTAAAAGTCTCCTTGAAGGTTATTTGGTGGTGATCGTACAATTTCTTGGC
ATGATCATAAACGCCGCCAACGTCGACAATTATATCGCACTTCTCCT
BS08964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 197..1077 | 897..17 | 4380 | 99.8 | Minus |
CG11980-PC | 1080 | CG11980-RC | 200..1080 | 897..17 | 4380 | 99.8 | Minus |
CG11980-PA | 1038 | CG11980-RA | 158..1038 | 897..17 | 4380 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RA | 1179 | CG11980-RA | 218..1098 | 897..17 | 4390 | 99.9 | Minus |
CG11980-RC | 1195 | CG11980-RC | 234..1114 | 897..17 | 4390 | 99.9 | Minus |
CG11980-RB | 1192 | CG11980-RB | 231..1111 | 897..17 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005250 | 761..17 | 3725 | 100 | Minus |
3R | 32079331 | 3R | 9004313..9004452 | 897..758 | 685 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:44:08 has no hits.
BS08964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:13 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 158..1038 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:03 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 158..1038 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:50 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 231..1111 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:34 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 231..1111 | 17..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:34 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004313..9004451 | 759..897 | 99 | -> | Minus |
3R | 9004509..9005250 | 17..758 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:50 Download gff for
BS08964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4830035..4830173 | 759..897 | 99 | -> | Minus |
arm_3R | 4830231..4830972 | 17..758 | 100 | | Minus |
BS08964.5prime Sequence
886 bp (776 high quality bases) assembled on 2006-01-18
> BS08964.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTTGGCGAGTGGC
BS08964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
CG11980-PC | 1080 | CG11980-RC | 29..862 | 42..875 | 4170 | 100 | Plus |
CG11980-PA | 1038 | CG11980-RA | 1..820 | 56..875 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1192 | CG11980-RB | 35..903 | 17..886 | 4325 | 99.9 | Plus |
CG11980-RC | 1195 | CG11980-RC | 35..906 | 17..886 | 4285 | 99.5 | Plus |
CG11980-RA | 1179 | CG11980-RA | 47..890 | 42..886 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005042 | 349..886 | 2640 | 99.8 | Plus |
3R | 32079331 | 3R | 9004142..9004452 | 42..352 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:14:52 has no hits.
BS08964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:14 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PB | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:05 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PB | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:55 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 29..903 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:21 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 29..903 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:21 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004142..9004451 | 42..351 | 100 | -> | Plus |
3R | 9004509..9005042 | 352..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:55 Download gff for
BS08964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829864..4830173 | 42..351 | 100 | -> | Plus |
arm_3R | 4830231..4830764 | 352..886 | 99 | | Plus |
BS08964.complete Sequence
1109 bp (1109 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636327
> BS08964.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGAC
GCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCGGAC
TGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAATTC
ATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGCCAT
GTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAAAGCTTT
CTAGACCAT
BS08964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1077 | CG11980-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
CG11980-RC | 1080 | CG11980-PC | 1..1080 | 17..1093 | 5320 | 99.7 | Plus |
CG11980-RA | 1038 | CG11980-PA | 1..1038 | 56..1093 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1192 | CG11980-RB | 35..1111 | 17..1093 | 5385 | 100 | Plus |
CG11980-RC | 1195 | CG11980-RC | 35..1114 | 17..1093 | 5320 | 99.7 | Plus |
CG11980-RA | 1179 | CG11980-RA | 47..1098 | 42..1093 | 5260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005250 | 349..1093 | 3725 | 100 | Plus |
3R | 32079331 | 3R | 9004142..9004452 | 42..352 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:36 has no hits.
BS08964.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:22 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 1..1077 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:19 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 28..1110 | 8..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:08 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 40..1109 | 22..1091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:22 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 28..1110 | 8..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:29 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 40..1109 | 22..1091 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:29 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004142..9004451 | 42..351 | 100 | -> | Plus |
3R | 9004056..9004075 | 22..41 | 100 | -> | Plus |
3R | 9004509..9005248 | 352..1091 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:08 Download gff for
BS08964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829778..4829797 | 22..41 | 100 | -> | Plus |
arm_3R | 4829864..4830173 | 42..351 | 100 | -> | Plus |
arm_3R | 4830231..4830970 | 352..1091 | 100 | | Plus |
BS08964.pep Sequence
Translation from 16 to 1092
> BS08964.pep
MFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDE
YKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSV
RPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFI
QIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVD
IEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEI
LVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYL
GRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKK
STEWTEEQ*
BS08964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 358 | CG11980-PB | 1..358 | 1..358 | 1903 | 100 | Plus |
CG11980-PC | 359 | CG11980-PC | 1..359 | 1..358 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 14..358 | 1839 | 100 | Plus |