Clone BS08964 Report

Search the DGRC for BS08964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG11980-RB
Protein status:BS08964.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08964.3prime Sequence

897 bp (865 high quality bases) assembled on 2006-01-18

> BS08964.3prime
ATGGTCTAGAAAGCTTTTATTGCTCTTCTGTCCACTCGGTGGATTTCTTG
GCCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGT
GTGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCAT
CGTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAG
CTGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTT
GAAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGAT
CGAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCG
CCGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATC
CCGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACT
CACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACG
CCAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATG
AGTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCAT
TATCAATTGCGTCCAGTTCGTTGATAAAATTCCTATAGATCTGAATAAAG
GCCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAG
GATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCAC
TGCTTAGCCTGACAACGTTGTAGTCCTCGCTTACATCTGGGCGAACGGAA
CTAAAAGTCTCCTTGAAGGTTATTTGGTGGTGATCGTACAATTTCTTGGC
ATGATCATAAACGCCGCCAACGTCGACAATTATATCGCACTTCTCCT

BS08964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 197..1077 897..17 4380 99.8 Minus
CG11980-PC 1080 CG11980-RC 200..1080 897..17 4380 99.8 Minus
CG11980-PA 1038 CG11980-RA 158..1038 897..17 4380 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RA 1179 CG11980-RA 218..1098 897..17 4390 99.9 Minus
CG11980-RC 1195 CG11980-RC 234..1114 897..17 4390 99.9 Minus
CG11980-RB 1192 CG11980-RB 231..1111 897..17 4390 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005250 761..17 3725 100 Minus
3R 32079331 3R 9004313..9004452 897..758 685 99.3 Minus
Blast to na_te.dros performed on 2015-02-01 06:44:08 has no hits.

BS08964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:13 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 158..1038 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:03 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 158..1038 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:50 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 231..1111 17..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:34 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 231..1111 17..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:34 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004313..9004451 759..897 99 -> Minus
3R 9004509..9005250 17..758 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:50 Download gff for BS08964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4830035..4830173 759..897 99 -> Minus
arm_3R 4830231..4830972 17..758 100   Minus

BS08964.5prime Sequence

886 bp (776 high quality bases) assembled on 2006-01-18

> BS08964.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTTGGCGAGTGGC

BS08964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 1..859 17..875 4295 100 Plus
CG11980-PC 1080 CG11980-RC 29..862 42..875 4170 100 Plus
CG11980-PA 1038 CG11980-RA 1..820 56..875 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1192 CG11980-RB 35..903 17..886 4325 99.9 Plus
CG11980-RC 1195 CG11980-RC 35..906 17..886 4285 99.5 Plus
CG11980-RA 1179 CG11980-RA 47..890 42..886 4200 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005042 349..886 2640 99.8 Plus
3R 32079331 3R 9004142..9004452 42..352 1555 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:14:52 has no hits.

BS08964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:14 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PB 1..869 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:05 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PB 1..869 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:55 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..903 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:21 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..903 8..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:21 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004142..9004451 42..351 100 -> Plus
3R 9004509..9005042 352..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:55 Download gff for BS08964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829864..4830173 42..351 100 -> Plus
arm_3R 4830231..4830764 352..886 99   Plus

BS08964.complete Sequence

1109 bp (1109 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636327

> BS08964.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGAC
GCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCGGAC
TGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAATTC
ATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGCCAT
GTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAAAGCTTT
CTAGACCAT

BS08964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1077 CG11980-PB 1..1077 17..1093 5385 100 Plus
CG11980-RC 1080 CG11980-PC 1..1080 17..1093 5320 99.7 Plus
CG11980-RA 1038 CG11980-PA 1..1038 56..1093 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1192 CG11980-RB 35..1111 17..1093 5385 100 Plus
CG11980-RC 1195 CG11980-RC 35..1114 17..1093 5320 99.7 Plus
CG11980-RA 1179 CG11980-RA 47..1098 42..1093 5260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005250 349..1093 3725 100 Plus
3R 32079331 3R 9004142..9004452 42..352 1555 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:34:36 has no hits.

BS08964.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:22 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 17..1093 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:19 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1110 8..1093 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:08 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 40..1109 22..1091 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:22 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1110 8..1093 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:29 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 40..1109 22..1091 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:29 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004142..9004451 42..351 100 -> Plus
3R 9004056..9004075 22..41 100 -> Plus
3R 9004509..9005248 352..1091 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:08 Download gff for BS08964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829778..4829797 22..41 100 -> Plus
arm_3R 4829864..4830173 42..351 100 -> Plus
arm_3R 4830231..4830970 352..1091 100   Plus

BS08964.pep Sequence

Translation from 16 to 1092

> BS08964.pep
MFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDE
YKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSV
RPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFI
QIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVD
IEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEI
LVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYL
GRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKK
STEWTEEQ*

BS08964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 358 CG11980-PB 1..358 1..358 1903 100 Plus
CG11980-PC 359 CG11980-PC 1..359 1..358 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 14..358 1839 100 Plus