Clone Sequence Records
BS08965.3prime Sequence
870 bp (770 high quality bases) assembled on 2006-01-18
> BS08965.3prime
ATGGTCTAGAAAGCTTCTACTCAAAAGTGTTCTCCTCCCGTTTAAGGGCA
CTAAAGAAGTCGGTGTTGAGTAATTTGCTGGGATCAACTGTCACAGCCGA
CTTCACAGCCCTTTGGTCATCCGCATTCTTGACAATGCGTTTCCATTCGG
AGAGGTCGTTGACTGGATTATTGGGCTTGGCCTCCAGATGAAGGGGTTTC
AGCATGAAATGGGCTTTAACCAGTTGGTTTAACAAACGCAAATGTATTGA
CTGAAAACCAAGCAGGTTCGCATGCTCACTCCACCAGTTGCATATGAGGC
TAAGGTAATGCTTGGTCGTCTCCTCGGAGTCGCGAAACAGACAGGTGAGG
TAATACTCGTGAAAGACAAGGGACAGAAGGTGCACTGCGATGCGGGAGAT
CTCGCCAACTTCTTCGGTGCCTGCTTTCCTGCTGTGCAACATCCATTGGT
GCATCACCTGGAAGACAATTGTTACCGCACTGAGGCACAACTTTACATAG
CACTCGCAGCCTTTTCCTCGCTGCGTTGTACTTGAATTTGAATTTTGATT
CGGGTTCGAAACAGACGCTGATGTCGATCCATTGGAGACCGATCCCTGCA
CAGCTCCTGTGGAGTTGAAGCTCAGACTGGTGCCTGTTTTCATCAGAGTA
CCATCGCTGGAGTCCTCGTCGCCATCGTCGGCAAAGTAAGGCAGCATTTC
AAGTATGAAATCCGGTGGGTTTTTGAAGCACTCGAACGCGAATCGCACAT
GATTTCCTCCGATCTTGAGCAGCAACTGAAAGTAGTCCTGCCGCAGAGGA
GTTTCACTAAAGAAGCATAGCTCGAGTAGGCCCGCGTAGACCTGAAGTAA
ACAGGAGTCGGGACAAATCG
BS08965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7347-PA | 2541 | mus304-RA | 1694..2541 | 864..17 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus304-RA | 2816 | CG7347-RA | 1788..2642 | 870..17 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18111687..18112131 | 864..420 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 18112450..18112673 | 240..17 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 18112202..18112383 | 422..241 | 895 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-10 21:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 119..156 | 519..556 | 118 | 78.9 | Plus |
BS08965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:15 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7347-PA | 1687..2541 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:06 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7347-PA | 1687..2541 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:59 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 1788..2644 | 11..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:40 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 1788..2644 | 11..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:40 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18112204..18112383 | 241..420 | 99 | -> | Minus |
| 3L | 18111680..18112130 | 421..870 | 99 | -> | Minus |
| 3L | 18112450..18112675 | 11..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:59 Download gff for
BS08965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18104780..18105230 | 421..870 | 99 | -> | Minus |
| arm_3L | 18105304..18105483 | 241..420 | 99 | -> | Minus |
| arm_3L | 18105550..18105775 | 11..240 | 98 | | Minus |
BS08965.5prime Sequence
808 bp (805 high quality bases) assembled on 2006-01-18
> BS08965.5prime
GAAGTTATCAGTCGACATGGCCAAGCGCTTTTCTGCCATGAAAGACTTCG
CGCGGTGCAAGAAACCGCGCCTGGATGTTAGCGTTACCCGCGGATCAGCG
CGACCCAGTCCACCGAGGAACAATTTCGATGGGATTCTCTGGGACGACGA
TGACGATGTCATCCTGATGGCCACCCAGCTGGCGGAGGCGGAAATCGAGG
CGGAGGAGCGGAAAAAGAAGGGCGGAACAGAGGTGGACATCGGCAACAGC
GAGGTCACCTTCAGCGAATTTGCACCCACTTTTCAGGGCTCAACCAGCAC
ACAGCAAATGTTTCCGCCGCCACCGCCGCCACAAAAGAAGCCTACTTCCC
TGGATATGGATGCGATTTTCGCGGATGATGATGATTTCGATTTTCTGGCC
GTTACCCTCATGGACAGTGAGCCACAAAAGATGCCGGAGCCGAAGACCAG
CACAAGTAGGATAACTACCAGCAGCATAAGTGTTCAGCAGAAAACCACGA
CCACGACGACCATCAATGCCACGCAATCCCGCCAGCAGGAGCATCAGCTA
AAGTTTCTCATGGATAGGATTGAAGCCCTTAAGCGGGAAAACGCGCAGCT
GGAAAAGAATTTGGGCGACAGTAAGGAACGCAATGAGATCAAGTCTGGTG
AGGTTTCCTTACTTCGTGATGAGCTGAAGCACTTGCGCCAGCAGCTGCAG
GCTAGCAAAATGGAAAAGCTGGCTTTGGCCGACGAAACGAATCGGGATTG
CAACAAAAAAGTGGCAGAAGCGGCCAAACAAATTGCGGCCAAGGACATCG
AGTTGAAG
BS08965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7347-PA | 2541 | mus304-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus304-RA | 2816 | CG7347-RA | 101..893 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18109914..18110552 | 16..654 | 3195 | 100 | Plus |
| 3L | 28110227 | 3L | 18110628..18110785 | 651..808 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:42:47 has no hits.
BS08965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:17 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7347-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:07 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7347-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:31 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 101..893 | 16..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:51:55 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 101..893 | 16..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:51:55 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18109914..18110550 | 16..652 | 100 | -> | Plus |
| 3L | 18110630..18110785 | 653..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:31 Download gff for
BS08965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18103730..18103885 | 653..808 | 100 | | Plus |
| arm_3L | 18103014..18103650 | 16..652 | 100 | -> | Plus |
BS08965.complete Sequence
2573 bp assembled on 2008-01-16
GenBank Submission: FJ636328
> BS08965.complete
GAAGTTATCAGTCGACATGGCCAAGCGCTTTTCTGCCATGAAAGACTTCG
CGCGGTGCAAGAAACCGCGCCTGGATGTTAGCGTTACCCGCGGATCAGCG
CGACCCAGTCCACCGAGGAACAATTTCGATGGGATTCTCTGGGACGACGA
TGACGATGTCATCCTGATGGCCACCCAGCTGGCGGAGGCGGAAATCGAGG
CGGAGGAGCGGAAAAAGAAGGGCGGAACAGAGGTGGACATCGGCAACAGC
GAGGTCACCTTCAGCGAATTTGCACCCACTTTTCAGGGCTCAACCAGCAC
ACAGCAAATGTTTCCGCCGCCACCGCCGCCACAAAAGAAGCCTACTTCCC
TGGATATGGATGCGATTTTCGCGGATGATGATGATTTCGATTTTCTGGCC
GTTACCCTCATGGACAGTGAGCCACAAAAGATGCCGGAGCCGAAGACCAG
CACAAGTAGGATAACTACCAGCAGCATAAGTGTTCAGCAGAAAACCACGA
CCACGACGACCATCAATGCCACGCAATCCCGCCAGCAGGAGCATCAGCTA
AAGTTTCTCATGGATAGGATTGAAGCCCTTAAGCGGGAAAACGCGCAGCT
GGAAAAGAATTTGGGCGACAGTAAGGAACGCAATGAGATCAAGTCTGGTG
AGGTTTCCTTACTTCGTGATGAGCTGAAGCACTTGCGCCAGCAGCTGCAG
GCTAGCAAAATGGAAAAGCTGGCTTTGGCCGACGAAACGAATCGGGATTG
CAACAAAAAAGTGGCAGAAGCGGCCAAACAAATTGCGGCCAAGGACATCG
AGTTGAAGATTAAGAACGCCGAGTTCTCAAAGTTGAAGACACAGCAAAAA
GCCCATGAAAGAAGCATGAATTCCAGCATGAGCATTTTACAGGCTGCTCC
AGATCCTTTGGAGAAACGCTTATCACTTCGCTTGAATAGGCTTAACATAC
ACAGATCTGTGCCCGGGCTGAAAACCGATAATGGCAGTGTGTTCGAATAC
AGCGAAAATGAGGATCAGACTAAGAAACGAAGAAATCATTTTGAACTGGA
ATTAAAGCAACTGCTACTTCATTACGCTCGGCTGCAGGCAAAGCCGGAAT
CTGTGGATAACCTCCTGCCAAGAATACTCTCGTCGGTCGGCAAGGTATTC
ACGGAGTTTGCTTCGTATGCTCAAAGTTTGGACTTTCCACACAACTGCAT
GCTGTATCCCTACAATCCCCACAACCTAGAGGAGGAAGTTCATCGCATTT
CCCTGACCCATCAGAGCTGTTTGTATGATAACGAAAAGGCTGTTCCGCTG
CGTCGCTTCATAGCTACCTTGGCTTTGATTTGCCGGCGAGAGGAAAGGAT
TTCTAGAGGTCTCACGGAGTGGAAAGAAAATGATCTGGGACTGCTAGATA
TGGCTATTGAAGCTATCACAAAACTAGGATTTTCCTACGAGGTCGGCCAA
CACTTTGGATTGCTGGAAGCCTTGACTTCACTCCTAAATAGCCTCCTACA
AGAAAATGCCCTTCTTCAACATAACGAGGAGCTACTCTTCGATCTGCTTA
AGCAGTTAGTTTTTACTCGTCCCAGTCCTTGGGTTTTTGCTGAGCTTAGC
TCCTGCTTTTTAAGCTGCCTTAGACATCCCCAACTTATGGATAAAATGTG
TGTGAATAGTCCCAAGGACTGCTTTGTATCGGATCGCGTTCGCTCCGTTT
ATCGATTTGGTCCCGACTCCTGTTTACTTCAGGTCTACGCGGGCCTACTC
GAGCTATGCTTCTTTAGTGAAACTCCTCTGCGGCAGGACTACTTTCAGTT
GCTGCTCAAGATCGGAGGAAATCATGTGCGATTCGCGTTCGAGTGCTTCA
AAAACCCACCGGATTTCATACTTGAAATGCTGCCTTACTTTGCCGACGAT
GGCGACGAGGACTCCAGCGATGGTACTCTGATGAAAACAGGCACCAGTCT
GAGCTTCAACTCCACAGGAGCTGTGCAGGGATCGGTCTCCAATGGATCGA
CATCAGCGTCTGTTTCGAACCCGAATCAAAATTCAAATTCAAGTACAACG
CAGCGAGGAAAAGGCTGCGAGTGCTATGTAAAGTTGTGCCTCAGTGCGGT
AACAATTGTCTTCCAGGTGATGCACCAATGGATGTTGCACAGCAGGAAAG
CAGGCACCGAAGAAGTTGGCGAGATCTCCCGCATCGCAGTGCACCTTCTG
TCCCTTGTCTTTCACGAGTATTACCTCACCTGTCTGTTTCGCGACTCCGA
GGAGACGACCAAGCATTACCTTAGCCTCATATGCAACTGGTGGAGTGAGC
ATGCGAACCTGCTTGGTTTTCAGTCAATACATTTGCGTTTGTTAAACCAA
CTGGTTAAAGCCCATTTCATGCTGAAACCCCTTCATCTGGAGGCCAAGCC
CAATAATCCAGTCAACGACCTCTCCGAATGGAAACGCATTGTCAAGAATG
CGGATGACCAAAGGGCTGTGAAGTCGGCTGTGACAGTTGATCCCAGCAAA
TTACTCAACACCGACTTCTTTAGTGCCCTTAAACGGGAGGAGAACACTTT
TGAGTAGAAGCTTTCTAGACCAT
BS08965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus304-RA | 2541 | CG7347-PA | 1..2541 | 17..2557 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus304-RA | 2816 | CG7347-RA | 101..2642 | 16..2557 | 12695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18110628..18112131 | 651..2154 | 7520 | 100 | Plus |
| 3L | 28110227 | 3L | 18109914..18110552 | 16..654 | 3195 | 100 | Plus |
| 3L | 28110227 | 3L | 18112450..18112673 | 2334..2557 | 1120 | 100 | Plus |
| 3L | 28110227 | 3L | 18112202..18112383 | 2152..2333 | 895 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-27 06:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 119..156 | 2055..2018 | 118 | 78.9 | Minus |
BS08965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:54 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 1..2541 | 17..2557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:43 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 87..2627 | 17..2557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:15 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 102..2642 | 17..2557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:54 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 86..2629 | 16..2563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:38 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus304-RA | 102..2642 | 17..2557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:38 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18112450..18112673 | 2334..2557 | 100 | | Plus |
| 3L | 18109915..18110550 | 17..652 | 100 | -> | Plus |
| 3L | 18110630..18112130 | 653..2153 | 100 | -> | Plus |
| 3L | 18112204..18112383 | 2154..2333 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:15 Download gff for
BS08965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18103015..18103650 | 17..652 | 100 | -> | Plus |
| arm_3L | 18103730..18105230 | 653..2153 | 100 | -> | Plus |
| arm_3L | 18105304..18105483 | 2154..2333 | 99 | -> | Plus |
| arm_3L | 18105550..18105773 | 2334..2557 | 100 | | Plus |
BS08965.pep Sequence
Translation from 16 to 2556
> BS08965.pep
MAKRFSAMKDFARCKKPRLDVSVTRGSARPSPPRNNFDGILWDDDDDVIL
MATQLAEAEIEAEERKKKGGTEVDIGNSEVTFSEFAPTFQGSTSTQQMFP
PPPPPQKKPTSLDMDAIFADDDDFDFLAVTLMDSEPQKMPEPKTSTSRIT
TSSISVQQKTTTTTTINATQSRQQEHQLKFLMDRIEALKRENAQLEKNLG
DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVA
EAAKQIAAKDIELKIKNAEFSKLKTQQKAHERSMNSSMSILQAAPDPLEK
RLSLRLNRLNIHRSVPGLKTDNGSVFEYSENEDQTKKRRNHFELELKQLL
LHYARLQAKPESVDNLLPRILSSVGKVFTEFASYAQSLDFPHNCMLYPYN
PHNLEEEVHRISLTHQSCLYDNEKAVPLRRFIATLALICRREERISRGLT
EWKENDLGLLDMAIEAITKLGFSYEVGQHFGLLEALTSLLNSLLQENALL
QHNEELLFDLLKQLVFTRPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPK
DCFVSDRVRSVYRFGPDSCLLQVYAGLLELCFFSETPLRQDYFQLLLKIG
GNHVRFAFECFKNPPDFILEMLPYFADDGDEDSSDGTLMKTGTSLSFNST
GAVQGSVSNGSTSASVSNPNQNSNSSTTQRGKGCECYVKLCLSAVTIVFQ
VMHQWMLHSRKAGTEEVGEISRIAVHLLSLVFHEYYLTCLFRDSEETTKH
YLSLICNWWSEHANLLGFQSIHLRLLNQLVKAHFMLKPLHLEAKPNNPVN
DLSEWKRIVKNADDQRAVKSAVTVDPSKLLNTDFFSALKREENTFE*
BS08965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus304-PA | 846 | CG7347-PA | 1..846 | 1..846 | 4377 | 100 | Plus |
