Clone Sequence Records
BS08971.3prime Sequence
958 bp (881 high quality bases) assembled on 2006-01-18
> BS08971.3prime
ATGGTCTAGAAAGCTTTTAATTTTGTCTCTGCTTTTTCTTTTGCTTCCCC
GTTGCCCAAGTGTCCAGTTGGAACTCCAAGCCCTCCCGTCGCTGCCTTAC
ATTCTGCGGAGTTGCATAGGAGGTAGCCTGCCGGCGATTCTCGTCAAAAT
CAAACAGATGATCGATTCGCATATTAAGCTTCCTGGCCCGCGTGCCTGTG
CTCCAATGATCTTTCTCCCTGCGCGGCTGGAATTCGTTTTGCACGACCTT
CCGACGGGGCACATGCTTCAAGGCCGTATCCCAGTCGCCGGTTTTCTTGA
GGTCCAGCATAATGTTGATCATCTGGTTTAGAGTTAGCGACTTTCCCGAA
CCGGAACCCCACTGTAGGTAGCGATCCAGGGGCAGTCTCGCCATCCGAAG
GCCCAATCGTTTGGCTTTGGCCAGCGAAAGGGGTTCGTTGTTCATAGTGT
CTACCATGGCGCCCACGATGTAGATGTCATCTGGGTTGTAAGTGACCAGA
TCCTCCCGGCAGTGGGGCGTTAGGTAGACCAGGTTCTGCTTGGGAAAGAG
TTCCGTAAAGCACTTGCTATGCAAATTTATCGGGAACTCTGGATTGTGCA
TGGTGGGGATGTAGCGTTGGAGGCTCTGCATGCATCTGCTGTCCATCTGG
GTGTTGCAATAGTGCAGATCGAAGGGCTCATCATTCATCCGGTTCTCCGC
AAAGCACATCATCAATTGCTTTGCTGCATAGGTAGCCTCCCGATTGTTCA
TGTGCTCATCGTAGGAGCAATCCAAAACCATTTTGGGGGCAAACTGCATG
GCCCGTGTGAGTCGGTTGTTCTGCCAGTGATTAATAGTGGTATCATAGAT
ACGCAGAAACAACGATGTGTGTCCCAGGCCATAGATAATGTGCGTATTCT
CCTCGCGCTCCTTTCGCATCTCCGCAAACCGCCGCTCGGCTTCCTTCGCT
CGCTCTGC
BS08971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 1341 | CG5190-RA | 400..1341 | 958..17 | 4685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 492..1434 | 958..16 | 4700 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451775..18452717 | 958..16 | 4700 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:43:42 has no hits.
BS08971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:27 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 400..1341 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:21 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 400..1341 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:54 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 492..1440 | 8..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:14 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 492..1440 | 8..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:14 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451775..18452723 | 8..958 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:54 Download gff for
BS08971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14339280..14340228 | 8..958 | 99 | | Minus |
BS08971.5prime Sequence
918 bp (861 high quality bases) assembled on 2006-01-18
> BS08971.5prime
GAAGTTATCAGTCGACATGCTGAAGCATTTTGCACGATGGCGTCTGGGCA
GCCAGTTGCTAAAGGGATGTGCCGCACCAGTGAGGCAAGCCTCCAAAACC
TCCAGCGCAGAGAACCTGATAGCCGGCACAGAGGAACCCCAAAAAAAGTT
CGTCAATCCGTTTTCCCAGCCCGCTCCTGCGTTAAGTAATGATACGATAT
CAGAGAACAAGGAGGAACGGGATAAGCGACTCAAGGTGCTGCAGCTGGAG
GCGGACATTGCCCACCAGGAGGGTCGGCGGGTGCCGTCACTGGAATTCTT
TAAGGATCATCATTGGGAGCACGTGCTGACGCTACCCACAAAATCAGCTA
GGATCAAGTACTTTGGCTATCTCTGGCAAATCGAGATGAAGAAGGAGGCG
GATCAACGCAAGAAGGCAGAGCGAGCGAAGGAAGCCGAGCGGCGGGTTGC
GGAGATGCGAAAGGAGCGCGAGGAGAATACGCACATTATCTATGGCCTGG
GACACACATCGTTGTTTCTGCGTATCTATGATACCACTATTAATCACTGG
CAGAACAACCGACTCACACGGGCCATGCAGTTTGCCCCCAAAATGGTTTT
GGATTGCTCCTACGATGAGCACATGAACAATCGGGAGGCTACCTATGCAG
CAAAGCAATTGATGATGTGCTTTGCGGAGAACCGGATGAATGATGAGCCC
TTCGATCTGCACTATTGCAACACCCAGATGGACAGCAGATGCATGCAGAG
CCTCCAACGCTACATCCCCACCATGCACAATCCAGAGTTCCCGATAAATT
TGCATAGCAAGTGCTTTACGGAACTCTTTCCCAAGCAGAACCTGNTCTAC
CTAACGCCCCACTGCCCGGGAGGATCTGGTCACTTTACAACCAGATGACA
TCTACATCGTGGGCGCCA
BS08971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 1341 | CG5190-RA | 1..850 | 17..866 | 4231 | 99.8 | Plus |
| CG5190-PA | 1341 | CG5190-RA | 874..901 | 891..918 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 93..993 | 17..918 | 4429 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451376..18452276 | 17..918 | 4389 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:27:52 has no hits.
BS08971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:28 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:22 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:48:16 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..992 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:57 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..992 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:57 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451376..18452275 | 17..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:48:16 Download gff for
BS08971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14338881..14339780 | 17..917 | 99 | | Plus |
BS08971.complete Sequence
1373 bp (1373 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636329
> BS08971.complete
GAAGTTATCAGTCGACATGCTGAAGCATTTTGCACGATGGCGTCTGGGCA
GCCAGTTGCTAAAGGGATGTGCCGCACCAGTGAGGCAAGCCTCCAAAACC
TCCAGCGCAGAGAACCTGATAGCCGGCACAGAGGAACCCCAAAAAAAGTT
CGTCAATCCGTTTTCCCAGCCCGCTCCTGCGTTAAGTAATGATACGATAT
CAGAGAACAAGGAGGAACGGGATAAGCGACTCAAGGTGCTGCAGCTGGAG
GCGGACATTGCCCACCAGGAGGGTCGGCGGGTGCCGTCACTGGAATTCTT
TAAGGATCATCATTGGGAGCACGTGCTGACGCTACCCACAAAATCAGCTA
GGATCAAGTACTTTGGCTATCTCTGGCAAATCGAGATGAAGAAGGAGGCG
GATCAACGCAAGAAGGCAGAGCGAGCGAAGGAAGCCGAGCGGCGGGTTGC
GGAGATGCGAAAGGAGCGCGAGGAGAATACGCACATTATCTATGGCCTGG
GACACACATCGTTGTTTCTGCGTATCTATGATACCACTATTAATCACTGG
CAGAACAACCGACTCACACGGGCCATGCAGTTTGCCCCCAAAATGGTTTT
GGATTGCTCCTACGATGAGCACATGAACAATCGGGAGGCTACCTATGCAG
CAAAGCAATTGATGATGTGCTTTGCGGAGAACCGGATGAATGATGAGCCC
TTCGATCTGCACTATTGCAACACCCAGATGGACAGCAGATGCATGCAGAG
CCTCCAACGCTACATCCCCACCATGCACAATCCAGAGTTCCCGATAAATT
TGCATAGCAAGTGCTTTACGGAACTCTTTCCCAAGCAGAACCTGGTCTAC
CTAACGCCCCACTGCCGGGAGGATCTGGTCACTTACAACCCAGATGACAT
CTACATCGTGGGCGCCATGGTAGACACTATGAACAACGAACCCCTTTCGC
TGGCCAAAGCCAAACGATTGGGCCTTCGGATGGCGAGACTGCCCCTGGAT
CGCTACCTACAGTGGGGTTCCGGTTCGGGAAAGTCGCTAACTCTAAACCA
GATGATCAACATTATGCTGGACCTCAAGAAAACCGGCGACTGGGATACGG
CCTTGAAGCATGTGCCCCGTCGGAAGGTCGTGCAAAACGAATTCCAGCCG
CGCAGGGAGAAAGATCATTGGAGCACAGGCACGCGGGCCAGGAAGCTTAA
TATGCGAATCGATCATCTGTTTGATTTTGACGAGAATCGCCGGCAGGCTA
CCTCCTATGCAACTCCGCAGAATGTAAGGCAGCGACGGGAGGGCTTGGAG
TTCCAACTGGACACTTGGGCAACGGGGAAGCAAAAGAAAAAGCAGAGACA
AAATTAAAAGCTTTCTAGACCAT
BS08971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1341 | CG5190-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-RA | 1453 | CG5190-RA | 93..1434 | 17..1358 | 6710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18451376..18452717 | 17..1358 | 6710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:08 has no hits.
BS08971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:23 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:21 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 72..1419 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:55 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..1425 | 17..1349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:23 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 72..1419 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:41 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5190-RA | 93..1425 | 17..1349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:41 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18451376..18452708 | 17..1349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:55 Download gff for
BS08971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14338881..14340213 | 17..1349 | 100 | | Plus |
BS08971.pep Sequence
Translation from 16 to 1356
> BS08971.pep
MLKHFARWRLGSQLLKGCAAPVRQASKTSSAENLIAGTEEPQKKFVNPFS
QPAPALSNDTISENKEERDKRLKVLQLEADIAHQEGRRVPSLEFFKDHHW
EHVLTLPTKSARIKYFGYLWQIEMKKEADQRKKAERAKEAERRVAEMRKE
REENTHIIYGLGHTSLFLRIYDTTINHWQNNRLTRAMQFAPKMVLDCSYD
EHMNNREATYAAKQLMMCFAENRMNDEPFDLHYCNTQMDSRCMQSLQRYI
PTMHNPEFPINLHSKCFTELFPKQNLVYLTPHCREDLVTYNPDDIYIVGA
MVDTMNNEPLSLAKAKRLGLRMARLPLDRYLQWGSGSGKSLTLNQMINIM
LDLKKTGDWDTALKHVPRRKVVQNEFQPRREKDHWSTGTRARKLNMRIDH
LFDFDENRRQATSYATPQNVRQRREGLEFQLDTWATGKQKKKQRQN*
BS08971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5190-PA | 446 | CG5190-PA | 1..446 | 1..446 | 2379 | 100 | Plus |
| CG14618-PA | 319 | CG14618-PA | 43..285 | 127..384 | 174 | 22.3 | Plus |
