Clone Sequence Records
BS08974.3prime Sequence
904 bp (854 high quality bases) assembled on 2006-01-18
> BS08974.3prime
ATGGTCTAGAAAGCTTCTACTTGGCAACTCGATCCTGGTAGGCTGCCCAC
AGGCGGTCGCGGTACGTCTGAGCCGCCTGCTTCGGGCTGCTGGCCTTCAG
AATGCCCCTGCCCACCACTCCGATGTCGGCACCCCGCTCCTTGACCACAT
GCTCCGGACTCTGGTACTGCTGGCCCAATTGGTCCACGCCCTCGTCTATC
TTCACACCGGGCGTCAGTTGCAGAAGTCCGGGGAAGGCAAAGGCATCGGA
GGATTGGCATACCACACCGGCAACGAAATCTACATCGGCTCCCTCGGTTG
CGATCTTGTTGCTGTTCTCCTTGTACTTGGCGTCGATCAGGTTGCCGCTG
GCAGACATCTCCGCCAGCAGGAAGACGCCGCGTTCCTTGCCGGCTCCTCC
TTCGCCAAGGCCCGCCTTCAGACCCTGCAGAATACTACGTCCAGGTAAGG
TGTGGGCCGTGACCAGATCTGCCCAACTGGAAATCTTATAGATGCCCTTG
CCGTACTGCAGGGACACCGTGTTGCCGATGTCTGCAAACTTGCGATCCTC
CATCAGCAGGAAATTGTGCCGCTGGGCCAGAGCTTGCAGGTCAGCGATGA
ATTTATCACTGAAATCCTCCACAATGTCTACGTGCGTCTTCAGCAGGCAA
ATGTACGGACCGCACTTGTCGGCCACGTCCAGGATCTCATCGGCGTGTGT
CAGGTCGGCGGCCAAGCAGAGGTTCGTCTGTTTGCTGGCTATCAGGTTGA
AGAGGCGCTTGGCCACCGCGCTCTTAGCCAGATTGGCGCGATTCTCGTAG
GTCAGTTTAGTGCGCTGCAAGTCGTTGGCTCTGACAACGTCGCCCTTATC
GCCGCCGACGAANGTACCATCGCTGTTGATTTGCACGGCGGCGATGTACT
TGGC
BS08974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3593-PA | 1482 | r-l-RA | 595..1482 | 904..17 | 4421 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 696..1585 | 904..15 | 4439 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21071011..21071826 | 15..830 | 4080 | 100 | Plus |
3R | 32079331 | 3R | 21072489..21072564 | 829..904 | 369 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:49:02 has no hits.
BS08974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:31 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-PA | 595..1482 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:27 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3593-PA | 595..1482 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:45 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 696..1585 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:51 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 696..1585 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:51 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21071011..21071824 | 15..828 | 100 | <- | Plus |
3R | 21072489..21072564 | 829..904 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:45 Download gff for
BS08974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16896733..16897546 | 15..828 | 100 | <- | Plus |
arm_3R | 16898211..16898286 | 829..904 | 98 | | Plus |
BS08974.5prime Sequence
894 bp (823 high quality bases) assembled on 2006-01-18
> BS08974.5prime
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGT
BS08974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3593-PA | 1482 | r-l-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 101..979 | 16..894 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21072489..21073006 | 686..169 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21071617..21071826 | 894..685 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 21073066..21073219 | 169..16 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:20 has no hits.
BS08974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:33 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:28 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3593-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:11 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 101..979 | 16..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:05 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 101..979 | 16..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:05 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21071617..21071824 | 687..894 | 100 | <- | Minus |
3R | 21072489..21073005 | 170..686 | 100 | <- | Minus |
3R | 21073066..21073219 | 16..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:11 Download gff for
BS08974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16897339..16897546 | 687..894 | 100 | <- | Minus |
arm_3R | 16898211..16898727 | 170..686 | 100 | <- | Minus |
arm_3R | 16898788..16898941 | 16..169 | 100 | | Minus |
BS08974.complete Sequence
1514 bp (1514 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636330
> BS08974.complete
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAGCGGCACA
ATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACATCGGCAACACGGTG
TCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCAGTTGGGCAGATCT
GGTCACGGCCCACACCTTACCTGGACGTAGTATTCTGCAGGGTCTGAAGG
CGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGGCGTCTTCCTGCTG
GCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCAAGTACAAGGAGAA
CAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGATTTCGTTGCCGGTG
TGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGGACTTCTGCAACTG
ACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAATTGGGCCAGCAGTA
CCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCCGACATCGGAGTGG
TGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCAGGCGGCTCAGACG
TACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAGTTGCCAAGTAGAA
GCTTTCTAGACCAT
BS08974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 1482 | CG3593-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-RA | 2039 | CG3593-RA | 101..1585 | 16..1500 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21071011..21071826 | 1500..685 | 4080 | 100 | Minus |
3R | 32079331 | 3R | 21072489..21073006 | 686..169 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21073066..21073219 | 169..16 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:46 has no hits.
BS08974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:11 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 1..1482 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:05 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 99..1583 | 16..1500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:12 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 102..1583 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:11 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 99..1583 | 16..1500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:15 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
r-l-RA | 102..1583 | 17..1498 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:15 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21071013..21071824 | 687..1498 | 100 | <- | Minus |
3R | 21072489..21073005 | 170..686 | 100 | <- | Minus |
3R | 21073066..21073218 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:12 Download gff for
BS08974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16896735..16897546 | 687..1498 | 100 | <- | Minus |
arm_3R | 16898788..16898940 | 17..169 | 100 | | Minus |
arm_3R | 16898211..16898727 | 170..686 | 100 | <- | Minus |
BS08974.pep Sequence
Translation from 16 to 1497
> BS08974.pep
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*
BS08974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
r-l-PA | 493 | CG3593-PA | 1..493 | 1..493 | 2486 | 100 | Plus |