Clone BS08974 Report

Search the DGRC for BS08974

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptr-l-RA
Protein status:BS08974.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08974.3prime Sequence

904 bp (854 high quality bases) assembled on 2006-01-18

> BS08974.3prime
ATGGTCTAGAAAGCTTCTACTTGGCAACTCGATCCTGGTAGGCTGCCCAC
AGGCGGTCGCGGTACGTCTGAGCCGCCTGCTTCGGGCTGCTGGCCTTCAG
AATGCCCCTGCCCACCACTCCGATGTCGGCACCCCGCTCCTTGACCACAT
GCTCCGGACTCTGGTACTGCTGGCCCAATTGGTCCACGCCCTCGTCTATC
TTCACACCGGGCGTCAGTTGCAGAAGTCCGGGGAAGGCAAAGGCATCGGA
GGATTGGCATACCACACCGGCAACGAAATCTACATCGGCTCCCTCGGTTG
CGATCTTGTTGCTGTTCTCCTTGTACTTGGCGTCGATCAGGTTGCCGCTG
GCAGACATCTCCGCCAGCAGGAAGACGCCGCGTTCCTTGCCGGCTCCTCC
TTCGCCAAGGCCCGCCTTCAGACCCTGCAGAATACTACGTCCAGGTAAGG
TGTGGGCCGTGACCAGATCTGCCCAACTGGAAATCTTATAGATGCCCTTG
CCGTACTGCAGGGACACCGTGTTGCCGATGTCTGCAAACTTGCGATCCTC
CATCAGCAGGAAATTGTGCCGCTGGGCCAGAGCTTGCAGGTCAGCGATGA
ATTTATCACTGAAATCCTCCACAATGTCTACGTGCGTCTTCAGCAGGCAA
ATGTACGGACCGCACTTGTCGGCCACGTCCAGGATCTCATCGGCGTGTGT
CAGGTCGGCGGCCAAGCAGAGGTTCGTCTGTTTGCTGGCTATCAGGTTGA
AGAGGCGCTTGGCCACCGCGCTCTTAGCCAGATTGGCGCGATTCTCGTAG
GTCAGTTTAGTGCGCTGCAAGTCGTTGGCTCTGACAACGTCGCCCTTATC
GCCGCCGACGAANGTACCATCGCTGTTGATTTGCACGGCGGCGATGTACT
TGGC

BS08974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3593-PA 1482 r-l-RA 595..1482 904..17 4421 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 696..1585 904..15 4439 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21071011..21071826 15..830 4080 100 Plus
3R 32079331 3R 21072489..21072564 829..904 369 98.7 Plus
Blast to na_te.dros performed on 2015-01-31 14:49:02 has no hits.

BS08974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:31 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-PA 595..1482 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:27 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3593-PA 595..1482 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:45 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 696..1585 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:51 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 696..1585 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:51 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21071011..21071824 15..828 100 <- Plus
3R 21072489..21072564 829..904 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:45 Download gff for BS08974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16896733..16897546 15..828 100 <- Plus
arm_3R 16898211..16898286 829..904 98   Plus

BS08974.5prime Sequence

894 bp (823 high quality bases) assembled on 2006-01-18

> BS08974.5prime
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGT

BS08974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3593-PA 1482 r-l-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 101..979 16..894 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21072489..21073006 686..169 2590 100 Minus
3R 32079331 3R 21071617..21071826 894..685 1050 100 Minus
3R 32079331 3R 21073066..21073219 169..16 770 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:20 has no hits.

BS08974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:33 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:28 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3593-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:11 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 101..979 16..894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:05 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 101..979 16..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:05 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21071617..21071824 687..894 100 <- Minus
3R 21072489..21073005 170..686 100 <- Minus
3R 21073066..21073219 16..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:11 Download gff for BS08974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16897339..16897546 687..894 100 <- Minus
arm_3R 16898211..16898727 170..686 100 <- Minus
arm_3R 16898788..16898941 16..169 100   Minus

BS08974.complete Sequence

1514 bp (1514 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636330

> BS08974.complete
GAAGTTATCAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCC
TGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAG
ATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGT
CAGTTATCCGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACA
TCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACG
GCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCT
GGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGG
GCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACC
TCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCAT
TGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGG
CCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCC
TTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGT
GGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTA
CCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAG
CGCACTAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGT
GGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCT
TGGCCGCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAG
TGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAGACATTGTGGAGGA
TTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTGGCCCAGCGGCACA
ATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACATCGGCAACACGGTG
TCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCAGTTGGGCAGATCT
GGTCACGGCCCACACCTTACCTGGACGTAGTATTCTGCAGGGTCTGAAGG
CGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGGCGTCTTCCTGCTG
GCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCAAGTACAAGGAGAA
CAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGATTTCGTTGCCGGTG
TGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGGACTTCTGCAACTG
ACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAATTGGGCCAGCAGTA
CCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCCGACATCGGAGTGG
TGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCAGGCGGCTCAGACG
TACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAGTTGCCAAGTAGAA
GCTTTCTAGACCAT

BS08974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 1482 CG3593-PA 1..1482 17..1498 7410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-RA 2039 CG3593-RA 101..1585 16..1500 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21071011..21071826 1500..685 4080 100 Minus
3R 32079331 3R 21072489..21073006 686..169 2590 100 Minus
3R 32079331 3R 21073066..21073219 169..16 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:31:46 has no hits.

BS08974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:11 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:05 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 99..1583 16..1500 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:12 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 102..1583 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:11 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 99..1583 16..1500 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:15 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 102..1583 17..1498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:15 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21071013..21071824 687..1498 100 <- Minus
3R 21072489..21073005 170..686 100 <- Minus
3R 21073066..21073218 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:12 Download gff for BS08974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16896735..16897546 687..1498 100 <- Minus
arm_3R 16898788..16898940 17..169 100   Minus
arm_3R 16898211..16898727 170..686 100 <- Minus

BS08974.pep Sequence

Translation from 16 to 1497

> BS08974.pep
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*

BS08974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-PA 493 CG3593-PA 1..493 1..493 2486 100 Plus