Clone Sequence Records
BS08976.3prime Sequence
943 bp (823 high quality bases) assembled on 2006-01-18
> BS08976.3prime
ATGGTCTAGAAAGCTTTTAGGCCGGATTAAGCACGGCCACCTTGCGTAGG
CTCTCTAGCTCGCTTCTCTTCAAACGCAGACTGAACATGGCCTCAACAAA
GCCATGACAGTCCGTCACAATGTTGTCCTGGATCATGGTATCCCGGAATA
GATTGGCCAGGGCAGCAATATCATCACAGCCCAGAATGGCGTTCTTGTGA
GTGACGAACATGGTTAGGGCGGCACGAAAAACGATCTTGTAGCCCTCGGC
AAAGACACAGTCCCATATACGTAGCACAGTCTCCACGGGCAGCACCTCGG
CAAAGATGCAGATGAACCATTTGCTGGCGATCACCGGATAGGGCAGGCCC
AAGTTATCCACATGCCGATTTACAGCGGGAATTCGCCGGATGACCAATTC
GCGGAACACGGCCAGATCCCTCAGCAGATTGGCCATATTATGGGAATGGT
ATTGCGGCACGATGTTTTCAACGATATGCTTGAGCAGCCAAAAGGACTTC
TCCTCATCGTCGGTGACGATCAACAGGAGGCCGGCTATGTAGTTAAGACC
TTGGCAGTAACCCACGTCCCGATTGTGATGGGCGTAGGCGATGAGAATGT
TGTACAACCGCTGCTTCTTCATATCGAAGTGAATATTGTCGGGGAAGGTA
CGAGGTAGATCGATTGATATGGAATCGCTGATTTCTTTGTCGAAGGGCTC
GGTGCGCAGAAGGTTGCGAAAGAGATCCGGCGAGCGACGCTGGGCGGCGG
CAGCTCCAGATATCTTCATCCAGACGTCGGGACGGTATGGACCAGGAATG
CCCTTCCGAATGTACCGCTTCAGCTTGGCGTCCACCTGGGTGAGATCGGT
ATTTTGCTGCAGAATGGGCTCCCATTTCATGCGGCGCCGCGTTAACGTTT
TCAGGTAACCATCCATGAACTTTGAGTAGTTGTTATAGTCGAA
BS08976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PA | 993 | CG5916-RA | 67..993 | 943..17 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 600..1526 | 943..17 | 4620 | 99.9 | Minus |
CG5916-RA | 2146 | CG5916-RA | 597..1523 | 943..17 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147780..16148375 | 943..348 | 2965 | 99.8 | Minus |
3R | 32079331 | 3R | 16148434..16148766 | 349..17 | 1665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:49:16 has no hits.
BS08976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:36 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 69..993 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:33 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 69..993 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:53 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 610..1541 | 13..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:28 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 597..1528 | 13..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:28 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147780..16148374 | 349..943 | 99 | -> | Minus |
3R | 16148435..16148771 | 13..348 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:53 Download gff for
BS08976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973502..11974096 | 349..943 | 99 | -> | Minus |
arm_3R | 11974157..11974493 | 13..348 | 99 | | Minus |
BS08976.5prime Sequence
980 bp (861 high quality bases) assembled on 2006-01-18
> BS08976.5prime
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAAAGAACGAGCTAAAGAGCCTACG
BS08976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PA | 993 | CG5916-RA | 1..941 | 17..957 | 4705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 534..1498 | 17..980 | 4770 | 99.7 | Plus |
CG5916-RA | 2146 | CG5916-RA | 531..1495 | 17..980 | 4770 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147741..16148375 | 44..678 | 3175 | 100 | Plus |
3R | 32079331 | 3R | 16148434..16148738 | 677..980 | 1445 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:18:30 has no hits.
BS08976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:37 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 1..965 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:34 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-PA | 1..965 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:43 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1508 | 7..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:15 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 522..1495 | 7..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:15 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147743..16148374 | 46..677 | 100 | -> | Plus |
3R | 16148435..16148738 | 678..980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:43 Download gff for
BS08976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973465..11974096 | 46..677 | 100 | -> | Plus |
arm_3R | 11974157..11974460 | 678..980 | 99 | | Plus |
BS08976.complete Sequence
1025 bp (1025 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636331
> BS08976.complete
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAGAGAAGCGAGCTAGAGAGCCTACGCAAGGTGGCCGTGCTTAAT
CCGGCCTAAAAGCTTTCTAGACCAT
BS08976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 993 | CG5916-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
CG5916-RA | 993 | CG5916-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-RB | 2396 | CG5916-RB | 534..1526 | 17..1009 | 4965 | 100 | Plus |
CG5916-RA | 2146 | CG5916-RA | 531..1523 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16147741..16148375 | 44..678 | 3175 | 100 | Plus |
3R | 32079331 | 3R | 16148434..16148766 | 677..1009 | 1665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:19 has no hits.
BS08976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:12 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:03 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1541 | 7..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:45 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 544..1534 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:12 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 535..1541 | 7..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:21 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5916-RA | 531..1521 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:21 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16147642..16147670 | 17..45 | 100 | -> | Plus |
3R | 16147743..16148374 | 46..677 | 100 | -> | Plus |
3R | 16148435..16148764 | 678..1007 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:45 Download gff for
BS08976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11973364..11973392 | 17..45 | 100 | -> | Plus |
arm_3R | 11973465..11974096 | 46..677 | 100 | -> | Plus |
arm_3R | 11974157..11974486 | 678..1007 | 100 | | Plus |
BS08976.pep Sequence
Translation from 16 to 1008
> BS08976.pep
MDATASSKFSDVDEYGFKRGDHFDYNNYSKFMDGYLKTLTRRRMKWEAIL
QQNTDLTQVDAKLKRYIRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNL
LRTEPFDKEISDSISIDLPRTFPDNIHFDMKKQRLYNILIAYAHHNRDVG
YCQGLNYIAGLLLIVTDDEEKSFWLLKHIVENIVPQYHSHNMANLLRDLA
VFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWD
CVFAEGYKIVFRAALTMFVTHKNAILGCDDIAALANLFRDTMIQDNIVTD
CHGFVEAMFSLRLKRSELESLRKVAVLNPA*
BS08976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5916-PB | 330 | CG5916-PB | 1..330 | 1..330 | 1734 | 100 | Plus |
CG5916-PA | 330 | CG5916-PA | 1..330 | 1..330 | 1734 | 100 | Plus |
CG7324-PB | 1256 | CG7324-PB | 459..674 | 67..280 | 329 | 33.9 | Plus |
CG7324-PA | 1291 | CG7324-PA | 459..674 | 67..280 | 329 | 33.9 | Plus |
Evi5-PC | 773 | CG11727-PC | 98..365 | 46..323 | 304 | 26.6 | Plus |