Clone BS08976 Report

Search the DGRC for BS08976

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG5916-RA
Protein status:BS08976.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08976.3prime Sequence

943 bp (823 high quality bases) assembled on 2006-01-18

> BS08976.3prime
ATGGTCTAGAAAGCTTTTAGGCCGGATTAAGCACGGCCACCTTGCGTAGG
CTCTCTAGCTCGCTTCTCTTCAAACGCAGACTGAACATGGCCTCAACAAA
GCCATGACAGTCCGTCACAATGTTGTCCTGGATCATGGTATCCCGGAATA
GATTGGCCAGGGCAGCAATATCATCACAGCCCAGAATGGCGTTCTTGTGA
GTGACGAACATGGTTAGGGCGGCACGAAAAACGATCTTGTAGCCCTCGGC
AAAGACACAGTCCCATATACGTAGCACAGTCTCCACGGGCAGCACCTCGG
CAAAGATGCAGATGAACCATTTGCTGGCGATCACCGGATAGGGCAGGCCC
AAGTTATCCACATGCCGATTTACAGCGGGAATTCGCCGGATGACCAATTC
GCGGAACACGGCCAGATCCCTCAGCAGATTGGCCATATTATGGGAATGGT
ATTGCGGCACGATGTTTTCAACGATATGCTTGAGCAGCCAAAAGGACTTC
TCCTCATCGTCGGTGACGATCAACAGGAGGCCGGCTATGTAGTTAAGACC
TTGGCAGTAACCCACGTCCCGATTGTGATGGGCGTAGGCGATGAGAATGT
TGTACAACCGCTGCTTCTTCATATCGAAGTGAATATTGTCGGGGAAGGTA
CGAGGTAGATCGATTGATATGGAATCGCTGATTTCTTTGTCGAAGGGCTC
GGTGCGCAGAAGGTTGCGAAAGAGATCCGGCGAGCGACGCTGGGCGGCGG
CAGCTCCAGATATCTTCATCCAGACGTCGGGACGGTATGGACCAGGAATG
CCCTTCCGAATGTACCGCTTCAGCTTGGCGTCCACCTGGGTGAGATCGGT
ATTTTGCTGCAGAATGGGCTCCCATTTCATGCGGCGCCGCGTTAACGTTT
TCAGGTAACCATCCATGAACTTTGAGTAGTTGTTATAGTCGAA

BS08976.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PA 993 CG5916-RA 67..993 943..17 4610 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 600..1526 943..17 4620 99.9 Minus
CG5916-RA 2146 CG5916-RA 597..1523 943..17 4620 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147780..16148375 943..348 2965 99.8 Minus
3R 32079331 3R 16148434..16148766 349..17 1665 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:49:16 has no hits.

BS08976.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:36 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 69..993 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:33 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 69..993 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:53 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 610..1541 13..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:28 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 597..1528 13..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:28 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16147780..16148374 349..943 99 -> Minus
3R 16148435..16148771 13..348 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:53 Download gff for BS08976.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973502..11974096 349..943 99 -> Minus
arm_3R 11974157..11974493 13..348 99   Minus

BS08976.5prime Sequence

980 bp (861 high quality bases) assembled on 2006-01-18

> BS08976.5prime
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAAAGAACGAGCTAAAGAGCCTACG

BS08976.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PA 993 CG5916-RA 1..941 17..957 4705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 534..1498 17..980 4770 99.7 Plus
CG5916-RA 2146 CG5916-RA 531..1495 17..980 4770 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147741..16148375 44..678 3175 100 Plus
3R 32079331 3R 16148434..16148738 677..980 1445 99 Plus
Blast to na_te.dros performed on 2015-02-11 10:18:30 has no hits.

BS08976.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:37 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 1..965 17..980 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:34 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-PA 1..965 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:43 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1508 7..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:15 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 522..1495 7..980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:15 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16147743..16148374 46..677 100 -> Plus
3R 16148435..16148738 678..980 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:43 Download gff for BS08976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973465..11974096 46..677 100 -> Plus
arm_3R 11974157..11974460 678..980 99   Plus

BS08976.complete Sequence

1025 bp (1025 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636331

> BS08976.complete
GAAGTTATCAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATG
TGGACGAATATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTAC
TCAAAGTTCATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAA
ATGGGAGGCCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCA
AGCTGAAGCGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGAC
GTCTGGATGAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGA
TCTCTTTCGCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCG
ATTCCATATCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTC
GATATGAAGAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCA
CAATCGGGACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCC
TGTTGATCGTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCAT
ATCGTTGAAAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCT
GCTGAGGGATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCG
CTGTAAATCGGCATGTGGATAACTTGGGCCTGCCCTATCCGGTGATCGCC
AGCAAATGGTTCATCTGCATCTTTGCCGAGGTGCTGCCCGTGGAGACTGT
GCTACGTATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTC
GTGCCGCCCTAACCATGTTCGTCACTCACAAGAACGCCATTCTGGGCTGT
GATGATATTGCTGCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGA
CAACATTGTGACGGACTGTCATGGCTTTGTTGAGGCCATGTTCAGTCTGC
GTTTGAAGAGAAGCGAGCTAGAGAGCCTACGCAAGGTGGCCGTGCTTAAT
CCGGCCTAAAAGCTTTCTAGACCAT

BS08976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 993 CG5916-PB 1..993 17..1009 4965 100 Plus
CG5916-RA 993 CG5916-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-RB 2396 CG5916-RB 534..1526 17..1009 4965 100 Plus
CG5916-RA 2146 CG5916-RA 531..1523 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16147741..16148375 44..678 3175 100 Plus
3R 32079331 3R 16148434..16148766 677..1009 1665 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:19 has no hits.

BS08976.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:12 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:03 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1541 7..1013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:45 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 544..1534 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:12 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 535..1541 7..1013 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:21 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
CG5916-RA 531..1521 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:21 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16147642..16147670 17..45 100 -> Plus
3R 16147743..16148374 46..677 100 -> Plus
3R 16148435..16148764 678..1007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:45 Download gff for BS08976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11973364..11973392 17..45 100 -> Plus
arm_3R 11973465..11974096 46..677 100 -> Plus
arm_3R 11974157..11974486 678..1007 100   Plus

BS08976.pep Sequence

Translation from 16 to 1008

> BS08976.pep
MDATASSKFSDVDEYGFKRGDHFDYNNYSKFMDGYLKTLTRRRMKWEAIL
QQNTDLTQVDAKLKRYIRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNL
LRTEPFDKEISDSISIDLPRTFPDNIHFDMKKQRLYNILIAYAHHNRDVG
YCQGLNYIAGLLLIVTDDEEKSFWLLKHIVENIVPQYHSHNMANLLRDLA
VFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWD
CVFAEGYKIVFRAALTMFVTHKNAILGCDDIAALANLFRDTMIQDNIVTD
CHGFVEAMFSLRLKRSELESLRKVAVLNPA*

BS08976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5916-PB 330 CG5916-PB 1..330 1..330 1734 100 Plus
CG5916-PA 330 CG5916-PA 1..330 1..330 1734 100 Plus
CG7324-PB 1256 CG7324-PB 459..674 67..280 329 33.9 Plus
CG7324-PA 1291 CG7324-PA 459..674 67..280 329 33.9 Plus
Evi5-PC 773 CG11727-PC 98..365 46..323 304 26.6 Plus