Clone Sequence Records
BS08977.3prime Sequence
942 bp (830 high quality bases) assembled on 2006-01-18
> BS08977.3prime
ATGGTCTAGAAAGCTTTTAGTTACACACTTTGGGCGCAGCATTCTCGCCC
ACCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTC
GGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGG
CAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTG
GATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATC
CGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAG
GCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTG
CTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTCGGCTTCCTT
GGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCA
CTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTT
TCTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTACTTGAGCGGT
GTCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTTCTGGTGTGG
GCTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACTGCTGCTGCA
TGTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAATGCCTTTTC
TTTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTTCGTCCACAT
CCATAACAGAAGCAGGTTCTTTAGGTGCAGCGGCAGTCTCTGTAGCGGCT
CCATTCTCCGACGTTTCTCCGCTCGACTTGAGGGGCTCTTCAGCTTTTGG
CACCTCTTCGCTTTGATTCCCAGGTTCTTCTGATATTGGTTTGACTTCAT
CGACATGATTCTGCTTCGCTTCCGCCACTGAAGGAGGATTCT
BS08977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PB | 1320 | CG1910-RB | 395..1320 | 942..17 | 4555 | 99.6 | Minus |
CG1910-PA | 1470 | CG1910-RA | 545..1470 | 942..17 | 4555 | 99.6 | Minus |
CG1910-PD | 1320 | CG1910-RD | 395..1320 | 942..17 | 4555 | 99.6 | Minus |
CG1910-PC | 1401 | CG1910-RC | 476..1401 | 942..17 | 4555 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 521..1447 | 942..16 | 4590 | 99.7 | Minus |
CG1910-RD | 2698 | CG1910-RD | 591..1517 | 942..16 | 4590 | 99.7 | Minus |
CG1910-RA | 3015 | CG1910-RA | 908..1834 | 942..16 | 4590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749729..31750592 | 942..79 | 4260 | 99.5 | Minus |
3R | 32079331 | 3R | 31750644..31750713 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 604..575 | 114 | 86.7 | Minus |
BS08977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:38 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PD | 395..1320 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:35 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PC | 476..1401 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:30 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 908..1840 | 9..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:30 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 908..1840 | 9..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:30 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749729..31750586 | 85..942 | 99 | -> | Minus |
3R | 31750645..31750719 | 9..84 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:30 Download gff for
BS08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27575451..27576308 | 85..942 | 99 | -> | Minus |
arm_3R | 27576367..27576441 | 9..84 | 94 | | Minus |
BS08977.5prime Sequence
843 bp (818 high quality bases) assembled on 2006-01-18
> BS08977.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAANAAGAACCAGAACAGAAGTC
BS08977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PA | 1470 | CG1910-RA | 1..827 | 17..843 | 4116 | 99.8 | Plus |
CG1910-PC | 1401 | CG1910-RC | 13..758 | 98..843 | 3711 | 99.8 | Plus |
CG1910-PB | 1320 | CG1910-RB | 1..677 | 167..843 | 3366 | 99.8 | Plus |
CG1910-PD | 1320 | CG1910-RD | 1..677 | 167..843 | 3366 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 3015 | CG1910-RA | 364..1190 | 17..843 | 4124 | 99.9 | Plus |
CG1910-RD | 2698 | CG1910-RD | 127..873 | 97..843 | 3724 | 99.9 | Plus |
CG1910-RC | 2628 | CG1910-RC | 58..803 | 98..843 | 3719 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750011 | 410..843 | 2159 | 99.8 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 98..413 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 31748006..31748086 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:37 has no hits.
BS08977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:40 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:36 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:47 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1190 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:19 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1190 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:19 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31748006..31748086 | 17..97 | 100 | -> | Plus |
3R | 31749207..31749521 | 98..412 | 100 | -> | Plus |
3R | 31749581..31750011 | 413..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:47 Download gff for
BS08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27573728..27573808 | 17..97 | 100 | -> | Plus |
arm_3R | 27574929..27575243 | 98..412 | 100 | -> | Plus |
arm_3R | 27575303..27575733 | 413..843 | 99 | | Plus |
BS08977.complete Sequence
1502 bp (1502 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636332
> BS08977.complete
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACTAAAAGCTTTCTAGACC
AT
BS08977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 1470 | CG1910-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
CG1910-RC | 1401 | CG1910-PC | 13..1401 | 98..1486 | 6945 | 100 | Plus |
CG1910-RD | 1320 | CG1910-PD | 1..1320 | 167..1486 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 3015 | CG1910-RA | 364..1834 | 17..1487 | 7355 | 100 | Plus |
CG1910-RD | 2698 | CG1910-RD | 127..1517 | 97..1487 | 6955 | 100 | Plus |
CG1910-RC | 2628 | CG1910-RC | 58..1447 | 98..1487 | 6950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750592 | 410..1424 | 5060 | 99.9 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 98..413 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 31748006..31748086 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 31750644..31750713 | 1418..1487 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 899..928 | 114 | 86.7 | Plus |
BS08977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:10 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1..1470 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:04 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 362..1838 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:53 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1831 | 17..1484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:10 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 362..1838 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:03 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1831 | 17..1484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:03 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31748006..31748086 | 17..97 | 100 | -> | Plus |
3R | 31749207..31749521 | 98..412 | 100 | -> | Plus |
3R | 31749581..31750586 | 413..1418 | 100 | -> | Plus |
3R | 31750645..31750710 | 1419..1484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:53 Download gff for
BS08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27573728..27573808 | 17..97 | 100 | -> | Plus |
arm_3R | 27574929..27575243 | 98..412 | 100 | -> | Plus |
arm_3R | 27575303..27576308 | 413..1418 | 100 | -> | Plus |
arm_3R | 27576367..27576432 | 1419..1484 | 100 | | Plus |
BS08977.pep Sequence
Translation from 16 to 1485
> BS08977.pep
MSEATVAQKPEAVEDVNASTGDEKQTPKRTPKRRSFIERAQKESEELVRT
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCN*
BS08977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PA | 489 | CG1910-PA | 1..489 | 1..489 | 2432 | 100 | Plus |
CG1910-PC | 466 | CG1910-PC | 5..466 | 28..489 | 2298 | 100 | Plus |
CG1910-PD | 439 | CG1910-PD | 1..439 | 51..489 | 2186 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4750..5217 | 7..458 | 215 | 23 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4789..5256 | 7..458 | 215 | 23 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3905..4325 | 7..463 | 199 | 22.9 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4274..4715 | 1..463 | 186 | 21.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4664..5143 | 1..463 | 186 | 20.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4100..4585 | 7..463 | 183 | 22.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3775..4268 | 7..464 | 179 | 23.2 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4490..4975 | 7..463 | 178 | 23.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3453..3935 | 14..463 | 177 | 22 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4880..5262 | 7..397 | 174 | 24.1 | Plus |