Clone BS08977 Report

Search the DGRC for BS08977

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG1910-RA
Protein status:BS08977.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08977.3prime Sequence

942 bp (830 high quality bases) assembled on 2006-01-18

> BS08977.3prime
ATGGTCTAGAAAGCTTTTAGTTACACACTTTGGGCGCAGCATTCTCGCCC
ACCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTC
GGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGG
CAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTG
GATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATC
CGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAG
GCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTG
CTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTCGGCTTCCTT
GGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCA
CTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTT
TCTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTACTTGAGCGGT
GTCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTTCTGGTGTGG
GCTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACTGCTGCTGCA
TGTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAATGCCTTTTC
TTTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTTCGTCCACAT
CCATAACAGAAGCAGGTTCTTTAGGTGCAGCGGCAGTCTCTGTAGCGGCT
CCATTCTCCGACGTTTCTCCGCTCGACTTGAGGGGCTCTTCAGCTTTTGG
CACCTCTTCGCTTTGATTCCCAGGTTCTTCTGATATTGGTTTGACTTCAT
CGACATGATTCTGCTTCGCTTCCGCCACTGAAGGAGGATTCT

BS08977.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PB 1320 CG1910-RB 395..1320 942..17 4555 99.6 Minus
CG1910-PA 1470 CG1910-RA 545..1470 942..17 4555 99.6 Minus
CG1910-PD 1320 CG1910-RD 395..1320 942..17 4555 99.6 Minus
CG1910-PC 1401 CG1910-RC 476..1401 942..17 4555 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 521..1447 942..16 4590 99.7 Minus
CG1910-RD 2698 CG1910-RD 591..1517 942..16 4590 99.7 Minus
CG1910-RA 3015 CG1910-RA 908..1834 942..16 4590 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749729..31750592 942..79 4260 99.5 Minus
3R 32079331 3R 31750644..31750713 85..16 350 100 Minus
Blast to na_te.dros performed 2015-02-12 03:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 604..575 114 86.7 Minus

BS08977.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:38 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PD 395..1320 17..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:35 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 476..1401 17..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:30 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 908..1840 9..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:30 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 908..1840 9..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:30 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749729..31750586 85..942 99 -> Minus
3R 31750645..31750719 9..84 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:30 Download gff for BS08977.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27575451..27576308 85..942 99 -> Minus
arm_3R 27576367..27576441 9..84 94   Minus

BS08977.5prime Sequence

843 bp (818 high quality bases) assembled on 2006-01-18

> BS08977.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAANAAGAACCAGAACAGAAGTC

BS08977.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PA 1470 CG1910-RA 1..827 17..843 4116 99.8 Plus
CG1910-PC 1401 CG1910-RC 13..758 98..843 3711 99.8 Plus
CG1910-PB 1320 CG1910-RB 1..677 167..843 3366 99.8 Plus
CG1910-PD 1320 CG1910-RD 1..677 167..843 3366 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 3015 CG1910-RA 364..1190 17..843 4124 99.9 Plus
CG1910-RD 2698 CG1910-RD 127..873 97..843 3724 99.9 Plus
CG1910-RC 2628 CG1910-RC 58..803 98..843 3719 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750011 410..843 2159 99.8 Plus
3R 32079331 3R 31749207..31749522 98..413 1580 100 Plus
3R 32079331 3R 31748006..31748086 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:16:37 has no hits.

BS08977.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:40 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:36 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:47 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1190 17..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:19 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1190 17..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:19 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31748006..31748086 17..97 100 -> Plus
3R 31749207..31749521 98..412 100 -> Plus
3R 31749581..31750011 413..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:47 Download gff for BS08977.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27573728..27573808 17..97 100 -> Plus
arm_3R 27574929..27575243 98..412 100 -> Plus
arm_3R 27575303..27575733 413..843 99   Plus

BS08977.complete Sequence

1502 bp (1502 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636332

> BS08977.complete
GAAGTTATCAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGG
CGGTGGAAGATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAA
CGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGA
GGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACTAAAAGCTTTCTAGACC
AT

BS08977.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 1470 CG1910-PA 1..1470 17..1486 7350 100 Plus
CG1910-RC 1401 CG1910-PC 13..1401 98..1486 6945 100 Plus
CG1910-RD 1320 CG1910-PD 1..1320 167..1486 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 3015 CG1910-RA 364..1834 17..1487 7355 100 Plus
CG1910-RD 2698 CG1910-RD 127..1517 97..1487 6955 100 Plus
CG1910-RC 2628 CG1910-RC 58..1447 98..1487 6950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750592 410..1424 5060 99.9 Plus
3R 32079331 3R 31749207..31749522 98..413 1580 100 Plus
3R 32079331 3R 31748006..31748086 17..97 405 100 Plus
3R 32079331 3R 31750644..31750713 1418..1487 350 100 Plus
Blast to na_te.dros performed 2014-11-26 15:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 899..928 114 86.7 Plus

BS08977.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:10 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1..1470 17..1486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:04 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 362..1838 17..1494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:53 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1831 17..1484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:10 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 362..1838 17..1494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:03 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1831 17..1484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:03 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31748006..31748086 17..97 100 -> Plus
3R 31749207..31749521 98..412 100 -> Plus
3R 31749581..31750586 413..1418 100 -> Plus
3R 31750645..31750710 1419..1484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:53 Download gff for BS08977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27573728..27573808 17..97 100 -> Plus
arm_3R 27574929..27575243 98..412 100 -> Plus
arm_3R 27575303..27576308 413..1418 100 -> Plus
arm_3R 27576367..27576432 1419..1484 100   Plus

BS08977.pep Sequence

Translation from 16 to 1485

> BS08977.pep
MSEATVAQKPEAVEDVNASTGDEKQTPKRTPKRRSFIERAQKESEELVRT
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCN*

BS08977.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PA 489 CG1910-PA 1..489 1..489 2432 100 Plus
CG1910-PC 466 CG1910-PC 5..466 28..489 2298 100 Plus
CG1910-PD 439 CG1910-PD 1..439 51..489 2186 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4750..5217 7..458 215 23 Plus
Strn-Mlck-PV 7944 CG44162-PV 4789..5256 7..458 215 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3905..4325 7..463 199 22.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4274..4715 1..463 186 21.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4664..5143 1..463 186 20.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4100..4585 7..463 183 22.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 3775..4268 7..464 179 23.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 4490..4975 7..463 178 23.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3453..3935 14..463 177 22 Plus
Strn-Mlck-PT 7905 CG44162-PT 4880..5262 7..397 174 24.1 Plus