Clone Sequence Records
BS08980.3prime Sequence
952 bp (747 high quality bases) assembled on 2006-01-18
> BS08980.3prime
ATGGTCTAGAAAGCTTTTAGGCTAGCTTATTCAGTGGTATCTCCTCAGTG
GGATGAACCTGATCCTTTGGCTCTGGTTTGCTAGTGCGGCAGCATTTGGT
TTTGATGCCGCCAATATCCTGGCGGCAAATGAGTCCGATGACGATGCCAA
TCACGGCCAGAACCATGATGCAGATGAGCAGCGTGTTGATGGCCTCCTGG
GAGATCTGCACCTGATTGGTCTGGCTCTCGGCAGGCGGCTCCACGCTGAC
TCCGCTTGTGCTGGTCTCGGAGCTCAGGATTCCGGCTTTGACCAGCTCCG
TGCTGTTGTCCATTTTGCCCCGATTGCGATTGGCACTTCTGGGCGGTGCG
GGTGTGGCGGTCACTGGCTTTGCAGTGCTGGTGATGCTGGCGACGATGGG
CGGATTTGTAATCCCCTTGAGCGGCGGCTCCGTGGGATAGATGAGACTGC
CGTTGAAGGGGGTGCCCAGTACGAATTCGTAGCAGCTGATGTCGTAGTTG
AGGAAGCTAATCGTGTCGATGGAGGTCAGCAGGCTGCACAGCTCCTCGAT
GTTCTGTTGTTCCAGTTCCGGCAGCTTCAGTTTAATTATTTTTGTTAGCG
GCGAGAAAGCTTTCGTATTGATTTGCTGTTTAAAATCGTTCTTGTTCAAG
CGCAACACCTCCAGGCCACTCATGTTCTGGAACGTCTGTTCCGGCAGTTC
CGTCCAGCTGCAGTTGACGCAGCTGAACTCCACCAAGTCGGGCTGGTTCA
AGAAGGATCCGTCCAGGCGCTGGGTTATGGTGTTGTTGCTCAAATCGAGT
AGCGTTAGTTCCTTGGCCGCCGCAAAGGTGTCGGGATCGATTTTGGTTAG
ACGGTTGTTGGCCAGCCGCAGGCGCTTCAAACGCTCCGATCCCTGAAAGA
CATCCTTGTCTATGCTGCTGATCAGATTGTGATTCAAATTGATTTCCCCG
CC
BS08980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17667-PA | 1377 | CG17667-RA | 447..1377 | 947..17 | 4655 | 100 | Minus |
| CG17667-PB | 1377 | CG17667-RB | 447..1377 | 947..17 | 4655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 645..1581 | 952..17 | 4660 | 99.9 | Minus |
| CG42709-RA | 2186 | CG42709-RA | 778..1714 | 952..17 | 4660 | 99.9 | Minus |
| CG42709-RB | 2212 | CG42709-RB | 804..1740 | 952..17 | 4660 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794793..12795088 | 629..334 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 12794381..12794656 | 901..626 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 12795162..12795325 | 334..171 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 12795458..12795612 | 171..17 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 12794270..12794317 | 947..900 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:24:07 has no hits.
BS08980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:45 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-PB | 441..1377 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:44 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-PB | 441..1377 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:19 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 804..1750 | 9..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:30 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 804..1750 | 9..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:30 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12795458..12795618 | 13..171 | 98 | -> | Minus |
| 3L | 12794264..12794315 | 902..952 | 98 | -> | Minus |
| 3L | 12794381..12794656 | 626..901 | 100 | -> | Minus |
| 3L | 12794797..12795088 | 334..625 | 100 | -> | Minus |
| 3L | 12795163..12795324 | 172..333 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:19 Download gff for
BS08980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12787364..12787415 | 902..952 | 98 | -> | Minus |
| arm_3L | 12787481..12787756 | 626..901 | 100 | -> | Minus |
| arm_3L | 12787897..12788188 | 334..625 | 100 | -> | Minus |
| arm_3L | 12788263..12788424 | 172..333 | 100 | -> | Minus |
| arm_3L | 12788558..12788718 | 13..171 | 98 | -> | Minus |
BS08980.5prime Sequence
978 bp (766 high quality bases) assembled on 2006-01-18
> BS08980.5prime
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAATAATTAAACTGAAGCTGCCGGAACTGGAAC
AACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGATT
AGCTTCCTCAACTACGACATCAGCTGCTACGAATTCGTACTGGGCACCCC
CTTTCAACGCAGTCTCATCTATCCCACG
BS08980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17667-PA | 1377 | CG17667-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
| CG17667-PB | 1377 | CG17667-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
| CG17667-PA | 1377 | CG17667-RA | 802..938 | 817..953 | 685 | 100 | Plus |
| CG17667-PB | 1377 | CG17667-RB | 802..938 | 817..953 | 685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1167 | 17..978 | 4745 | 99.7 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1300 | 17..978 | 4745 | 99.7 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1326 | 17..978 | 4745 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794381..12794656 | 509..784 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 255..510 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 68..254 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 12794793..12794991 | 781..978 | 885 | 97.5 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:29:41 has no hits.
BS08980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:55:46 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-PB | 1..963 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:00:45 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-PB | 1..963 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:42 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1326 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:51:38 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1326 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:51:38 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12791581..12791633 | 17..69 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 70..254 | 100 | -> | Plus |
| 3L | 12794062..12794315 | 255..508 | 100 | -> | Plus |
| 3L | 12794381..12794656 | 509..784 | 100 | -> | Plus |
| 3L | 12794797..12794991 | 785..978 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:42 Download gff for
BS08980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12787481..12787756 | 509..784 | 100 | -> | Plus |
| arm_3L | 12784681..12784733 | 17..69 | 100 | -> | Plus |
| arm_3L | 12787162..12787415 | 255..508 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 70..254 | 100 | -> | Plus |
| arm_3L | 12787897..12788091 | 785..978 | 98 | | Plus |
BS08980.complete Sequence
1409 bp (1409 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638819
> BS08980.complete
GAAGTTATCAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGA
TATTTTTGCTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGC
AGTGAGGAGGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTA
CAGTGAAACAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGAC
TGATGCCACAATCATCCTCCACATCGACCACCACCACATTTCGACCAATA
TTTAATATACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCG
CAACTGCCTCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCC
ATTTGACCCATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGAT
CTGAGCCATAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCT
GTCCAGGGCGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAG
ACAAGGATGTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCC
AACAACCGTCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGA
ACTAACGCTACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACG
GATCCTTCTTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGC
AGCTGGACGGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGA
GGTGTTGCGCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAG
CTTTCTCGCCGCTAACAAAAATAATTAAACTGAAGCTGCCGGAACTGGAA
CAACAGAACATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGAT
TAGCTTCCTCAACTACGACATCAGCTGCTACGAATTCGTACTGGGCACCC
CCTTCAACGGCAGTCTCATCTATCCCACGGAGCCGCCGCTCAAGGGGATT
ACAAATCCGCCCATCGTCGCCAGCATCACCAGCACTGCAAAGCCAGTGAC
CGCCACACCCGCACCGCCCAGAAGTGCCAATCGCAATCGGGGCAAAATGG
ACAACAGCACGGAGCTGGTCAAAGCCGGAATCCTGAGCTCCGAGACCAGC
ACAAGCGGAGTCAGCGTGGAGCCGCCTGCCGAGAGCCAGACCAATCAGGT
GCAGATCTCCCAGGAGGCCATCAACACGCTGCTCATCTGCATCATGGTTC
TGGCCGTGATTGGCATCGTCATCGGACTCATTTGCCGCCAGGATATTGGC
GGCATCAAAACCAAATGCTGCCGCACTAGCAAACCAGAGCCAAAGGATCA
GGTTCATCCCACTGAGGAGATACCACTGAATAAGCTAGCCTAAAAGCTTT
CTAGACCAT
BS08980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 1377 | CG42709-PC | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| CG42709-RA | 1377 | CG42709-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| CG42709-RB | 1377 | CG42709-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1581 | 17..1393 | 6885 | 100 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1714 | 17..1393 | 6885 | 100 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1740 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794793..12795088 | 781..1076 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 12794381..12794656 | 509..784 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 255..510 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 68..254 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 12795162..12795325 | 1076..1239 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 12795458..12795612 | 1239..1393 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:14 has no hits.
BS08980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:15 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 1..1377 | 17..1393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:09 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 716..2102 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:10 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1738 | 17..1391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:15 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 716..2102 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:31 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1738 | 17..1391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:31 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12794381..12794656 | 509..784 | 100 | -> | Plus |
| 3L | 12795163..12795324 | 1077..1238 | 100 | -> | Plus |
| 3L | 12795458..12795610 | 1239..1391 | 100 | | Plus |
| 3L | 12794062..12794315 | 255..508 | 100 | -> | Plus |
| 3L | 12794797..12795088 | 785..1076 | 100 | -> | Plus |
| 3L | 12791581..12791633 | 17..69 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 70..254 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:10 Download gff for
BS08980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12788558..12788710 | 1239..1391 | 100 | | Plus |
| arm_3L | 12787897..12788188 | 785..1076 | 100 | -> | Plus |
| arm_3L | 12788263..12788424 | 1077..1238 | 100 | -> | Plus |
| arm_3L | 12784681..12784733 | 17..69 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 70..254 | 100 | -> | Plus |
| arm_3L | 12787162..12787415 | 255..508 | 100 | -> | Plus |
| arm_3L | 12787481..12787756 | 509..784 | 100 | -> | Plus |
BS08980.pep Sequence
Translation from 16 to 1392
> BS08980.pep
MHVYYKFGLLLIFLLSVSISHTNAAPAGSEEANPLEDFNYGDDDYSETAT
GEESPETAENRLMPQSSSTSTTTTFRPIFNIPRRSNHVLEPSCPRNCLCL
EDFKFVQCANAHLTHVPLDMPKTAAIIDLSHNVIAELRPEDFANLSRAVE
INLNHNLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLLD
LSNNTITQRLDGSFLNQPDLVEFSCVNCSWTELPEQTFQNMSGLEVLRLN
KNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEELCSLLTSIDTISFLNY
DISCYEFVLGTPFNGSLIYPTEPPLKGITNPPIVASITSTAKPVTATPAP
PRSANRNRGKMDNSTELVKAGILSSETSTSGVSVEPPAESQTNQVQISQE
AINTLLICIMVLAVIGIVIGLICRQDIGGIKTKCCRTSKPEPKDQVHPTE
EIPLNKLA*
BS08980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-PC | 458 | CG17667-PC | 1..458 | 1..458 | 2359 | 100 | Plus |
| CG42709-PA | 458 | CG17667-PA | 1..458 | 1..458 | 2359 | 100 | Plus |
| CG42709-PB | 458 | CG17667-PB | 1..458 | 1..458 | 2359 | 100 | Plus |
| CG42709-PD | 457 | CG42709-PD | 1..457 | 1..458 | 2340 | 99.6 | Plus |
| CG7509-PA | 615 | CG7509-PA | 154..370 | 97..314 | 206 | 29 | Plus |
